Experiment: m.b. Spectinomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0353 and Echvi_0354 are separated by 411 nucleotides Echvi_0354 and Echvi_0355 are separated by 4 nucleotides
Echvi_0353: Echvi_0353 - hypothetical protein, at 379,783 to 380,916
_0353
Echvi_0354: Echvi_0354 - Predicted transcriptional regulators, at 381,328 to 381,657
_0354
Echvi_0355: Echvi_0355 - Putative stress-responsive transcriptional regulator, at 381,662 to 383,569
_0355
Position (kb) 381
382 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 380.335 kb on - strand, within Echvi_0353 at 380.356 kb on + strand, within Echvi_0353 at 380.356 kb on + strand, within Echvi_0353 at 380.357 kb on - strand, within Echvi_0353 at 380.418 kb on + strand, within Echvi_0353 at 380.459 kb on + strand, within Echvi_0353 at 380.460 kb on - strand, within Echvi_0353 at 380.460 kb on - strand, within Echvi_0353 at 380.490 kb on + strand, within Echvi_0353 at 380.505 kb on + strand, within Echvi_0353 at 380.506 kb on - strand, within Echvi_0353 at 380.506 kb on - strand, within Echvi_0353 at 380.506 kb on - strand, within Echvi_0353 at 380.536 kb on + strand, within Echvi_0353 at 380.537 kb on - strand, within Echvi_0353 at 380.556 kb on + strand, within Echvi_0353 at 380.556 kb on + strand, within Echvi_0353 at 380.557 kb on - strand, within Echvi_0353 at 380.608 kb on + strand, within Echvi_0353 at 380.608 kb on + strand, within Echvi_0353 at 380.608 kb on + strand, within Echvi_0353 at 380.608 kb on + strand, within Echvi_0353 at 380.609 kb on - strand, within Echvi_0353 at 380.609 kb on - strand, within Echvi_0353 at 380.609 kb on - strand, within Echvi_0353 at 380.617 kb on - strand, within Echvi_0353 at 380.636 kb on + strand, within Echvi_0353 at 380.684 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.689 kb on - strand, within Echvi_0353 at 380.689 kb on - strand, within Echvi_0353 at 380.689 kb on - strand, within Echvi_0353 at 380.752 kb on + strand, within Echvi_0353 at 380.802 kb on + strand, within Echvi_0353 at 380.803 kb on - strand at 380.816 kb on + strand at 380.842 kb on + strand at 380.842 kb on + strand at 380.843 kb on - strand at 380.843 kb on - strand at 380.848 kb on + strand at 380.849 kb on - strand at 380.849 kb on - strand at 380.879 kb on - strand at 380.889 kb on + strand at 380.969 kb on + strand at 381.047 kb on - strand at 381.048 kb on + strand at 381.048 kb on + strand at 381.048 kb on + strand at 381.048 kb on + strand at 381.048 kb on + strand at 381.049 kb on - strand at 381.049 kb on - strand at 381.049 kb on - strand at 381.049 kb on - strand at 381.049 kb on - strand at 381.136 kb on - strand at 381.136 kb on - strand at 381.190 kb on - strand at 381.236 kb on + strand at 381.237 kb on - strand at 381.237 kb on - strand at 381.237 kb on - strand at 381.284 kb on - strand at 381.284 kb on - strand at 381.284 kb on - strand at 381.284 kb on - strand at 381.307 kb on + strand at 381.308 kb on - strand at 381.312 kb on + strand at 381.312 kb on + strand at 381.350 kb on + strand at 381.350 kb on + strand at 381.351 kb on - strand at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.412 kb on + strand at 381.413 kb on - strand, within Echvi_0354 at 381.413 kb on - strand, within Echvi_0354 at 381.453 kb on - strand, within Echvi_0354 at 381.462 kb on - strand, within Echvi_0354 at 381.462 kb on - strand, within Echvi_0354 at 381.475 kb on + strand, within Echvi_0354 at 381.476 kb on - strand, within Echvi_0354 at 381.517 kb on + strand, within Echvi_0354 at 381.517 kb on + strand, within Echvi_0354 at 381.518 kb on - strand, within Echvi_0354 at 381.518 kb on - strand, within Echvi_0354 at 381.559 kb on + strand, within Echvi_0354 at 381.631 kb on - strand at 381.631 kb on - strand at 381.631 kb on - strand at 381.675 kb on + strand at 381.675 kb on + strand at 381.675 kb on + strand at 381.676 kb on - strand at 381.676 kb on - strand at 381.681 kb on + strand at 381.681 kb on + strand at 381.681 kb on + strand at 381.682 kb on - strand at 381.682 kb on - strand at 381.682 kb on - strand at 381.682 kb on - strand at 381.686 kb on - strand at 381.706 kb on + strand at 381.751 kb on + strand at 381.794 kb on - strand at 381.990 kb on - strand, within Echvi_0355 at 381.991 kb on + strand, within Echvi_0355 at 381.992 kb on - strand, within Echvi_0355 at 381.992 kb on - strand, within Echvi_0355 at 381.995 kb on + strand, within Echvi_0355 at 381.995 kb on + strand, within Echvi_0355 at 382.077 kb on + strand, within Echvi_0355 at 382.077 kb on + strand, within Echvi_0355 at 382.078 kb on - strand, within Echvi_0355 at 382.098 kb on - strand, within Echvi_0355 at 382.238 kb on + strand, within Echvi_0355 at 382.239 kb on - strand, within Echvi_0355 at 382.239 kb on - strand, within Echvi_0355 at 382.239 kb on - strand, within Echvi_0355 at 382.240 kb on + strand, within Echvi_0355 at 382.240 kb on + strand, within Echvi_0355 at 382.241 kb on - strand, within Echvi_0355 at 382.241 kb on - strand, within Echvi_0355 at 382.241 kb on - strand, within Echvi_0355 at 382.402 kb on - strand, within Echvi_0355 at 382.519 kb on - strand, within Echvi_0355 at 382.540 kb on + strand, within Echvi_0355
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.06 mg/ml remove 380,335 - Echvi_0353 0.49 +1.9 380,356 + Echvi_0353 0.51 -2.6 380,356 + Echvi_0353 0.51 +0.1 380,357 - Echvi_0353 0.51 -1.3 380,418 + Echvi_0353 0.56 -0.6 380,459 + Echvi_0353 0.60 +1.6 380,460 - Echvi_0353 0.60 -1.0 380,460 - Echvi_0353 0.60 +1.9 380,490 + Echvi_0353 0.62 +0.6 380,505 + Echvi_0353 0.64 +0.3 380,506 - Echvi_0353 0.64 -1.9 380,506 - Echvi_0353 0.64 +0.8 380,506 - Echvi_0353 0.64 -1.8 380,536 + Echvi_0353 0.66 +0.7 380,537 - Echvi_0353 0.66 -1.3 380,556 + Echvi_0353 0.68 -0.5 380,556 + Echvi_0353 0.68 +1.3 380,557 - Echvi_0353 0.68 +1.2 380,608 + Echvi_0353 0.73 -0.2 380,608 + Echvi_0353 0.73 -1.9 380,608 + Echvi_0353 0.73 -0.4 380,608 + Echvi_0353 0.73 -0.1 380,609 - Echvi_0353 0.73 -1.6 380,609 - Echvi_0353 0.73 +0.8 380,609 - Echvi_0353 0.73 -0.4 380,617 - Echvi_0353 0.74 -0.8 380,636 + Echvi_0353 0.75 -1.9 380,684 + Echvi_0353 0.79 -0.4 380,688 + Echvi_0353 0.80 +1.0 380,688 + Echvi_0353 0.80 -0.0 380,688 + Echvi_0353 0.80 -0.3 380,688 + Echvi_0353 0.80 +0.2 380,688 + Echvi_0353 0.80 +0.2 380,688 + Echvi_0353 0.80 -0.8 380,689 - Echvi_0353 0.80 -0.1 380,689 - Echvi_0353 0.80 -1.1 380,689 - Echvi_0353 0.80 +0.0 380,752 + Echvi_0353 0.85 +0.2 380,802 + Echvi_0353 0.90 +0.1 380,803 - -0.8 380,816 + -0.3 380,842 + +4.2 380,842 + -1.3 380,843 - +0.6 380,843 - +0.4 380,848 + +0.1 380,849 - +0.2 380,849 - -1.5 380,879 - +1.9 380,889 + +0.7 380,969 + +0.7 381,047 - -0.8 381,048 + -0.2 381,048 + -1.9 381,048 + -0.8 381,048 + +1.9 381,048 + -0.2 381,049 - +1.3 381,049 - +0.3 381,049 - -0.1 381,049 - +0.5 381,049 - +0.7 381,136 - +0.3 381,136 - +1.2 381,190 - +0.2 381,236 + -0.8 381,237 - +0.5 381,237 - -1.3 381,237 - -1.3 381,284 - -0.8 381,284 - +1.5 381,284 - +0.6 381,284 - -1.6 381,307 + -2.1 381,308 - -1.1 381,312 + -2.1 381,312 + -1.0 381,350 + +1.1 381,350 + -0.7 381,351 - +0.6 381,410 + Echvi_0354 0.25 -1.3 381,410 + Echvi_0354 0.25 -1.5 381,410 + Echvi_0354 0.25 -1.2 381,410 + Echvi_0354 0.25 -0.1 381,410 + Echvi_0354 0.25 +1.1 381,410 + Echvi_0354 0.25 +0.3 381,411 - Echvi_0354 0.25 +0.3 381,411 - Echvi_0354 0.25 -1.1 381,411 - Echvi_0354 0.25 +3.5 381,411 - Echvi_0354 0.25 -2.8 381,411 - Echvi_0354 0.25 -0.4 381,411 - Echvi_0354 0.25 +0.3 381,412 + +1.9 381,413 - Echvi_0354 0.26 -0.3 381,413 - Echvi_0354 0.26 -1.8 381,453 - Echvi_0354 0.38 +0.2 381,462 - Echvi_0354 0.41 -0.9 381,462 - Echvi_0354 0.41 +1.1 381,475 + Echvi_0354 0.45 -1.1 381,476 - Echvi_0354 0.45 -0.7 381,517 + Echvi_0354 0.57 +0.1 381,517 + Echvi_0354 0.57 +0.4 381,518 - Echvi_0354 0.58 +0.4 381,518 - Echvi_0354 0.58 -0.2 381,559 + Echvi_0354 0.70 -2.0 381,631 - -0.7 381,631 - -0.2 381,631 - +1.5 381,675 + +1.2 381,675 + -0.4 381,675 + -1.2 381,676 - -0.5 381,676 - +0.7 381,681 + +0.2 381,681 + -1.4 381,681 + +0.7 381,682 - +0.1 381,682 - +0.3 381,682 - +2.9 381,682 - +0.9 381,686 - -0.1 381,706 + -0.6 381,751 + +0.3 381,794 - -0.8 381,990 - Echvi_0355 0.17 +0.6 381,991 + Echvi_0355 0.17 +1.3 381,992 - Echvi_0355 0.17 +0.1 381,992 - Echvi_0355 0.17 -0.2 381,995 + Echvi_0355 0.17 -1.9 381,995 + Echvi_0355 0.17 -2.4 382,077 + Echvi_0355 0.22 -0.4 382,077 + Echvi_0355 0.22 +1.3 382,078 - Echvi_0355 0.22 +3.2 382,098 - Echvi_0355 0.23 +0.1 382,238 + Echvi_0355 0.30 -0.2 382,239 - Echvi_0355 0.30 +0.8 382,239 - Echvi_0355 0.30 -1.2 382,239 - Echvi_0355 0.30 -0.1 382,240 + Echvi_0355 0.30 -1.8 382,240 + Echvi_0355 0.30 -0.7 382,241 - Echvi_0355 0.30 -0.2 382,241 - Echvi_0355 0.30 -1.2 382,241 - Echvi_0355 0.30 -1.2 382,402 - Echvi_0355 0.39 +0.5 382,519 - Echvi_0355 0.45 -0.1 382,540 + Echvi_0355 0.46 -1.7
Or see this region's nucleotide sequence