Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0283

Experiment: m.b. Spectinomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0282 and Echvi_0283 are separated by 21 nucleotidesEchvi_0283 and Echvi_0284 are separated by 216 nucleotidesEchvi_0284 and Echvi_0285 are separated by 6 nucleotides Echvi_0282: Echvi_0282 - ASPIC and UnbV., at 291,230 to 294,565 _0282 Echvi_0283: Echvi_0283 - PAP2 superfamily., at 294,587 to 295,933 _0283 Echvi_0284: Echvi_0284 - nicotinate (nicotinamide) nucleotide adenylyltransferase, at 296,150 to 296,716 _0284 Echvi_0285: Echvi_0285 - guanylate kinase, at 296,723 to 297,295 _0285 Position (kb) 294 295 296Strain fitness (log2 ratio) -2 -1 0 1 2 3at 293.615 kb on + strand, within Echvi_0282at 293.636 kb on + strand, within Echvi_0282at 293.719 kb on + strand, within Echvi_0282at 293.843 kb on + strand, within Echvi_0282at 293.844 kb on - strand, within Echvi_0282at 293.851 kb on + strand, within Echvi_0282at 293.859 kb on - strand, within Echvi_0282at 293.876 kb on - strand, within Echvi_0282at 293.987 kb on + strand, within Echvi_0282at 294.027 kb on + strand, within Echvi_0282at 294.027 kb on + strand, within Echvi_0282at 294.035 kb on + strand, within Echvi_0282at 294.035 kb on + strand, within Echvi_0282at 294.036 kb on - strand, within Echvi_0282at 294.059 kb on + strand, within Echvi_0282at 294.059 kb on + strand, within Echvi_0282at 294.059 kb on + strand, within Echvi_0282at 294.059 kb on + strand, within Echvi_0282at 294.060 kb on - strand, within Echvi_0282at 294.060 kb on - strand, within Echvi_0282at 294.060 kb on - strand, within Echvi_0282at 294.120 kb on - strand, within Echvi_0282at 294.121 kb on + strand, within Echvi_0282at 294.121 kb on + strand, within Echvi_0282at 294.121 kb on + strand, within Echvi_0282at 294.122 kb on - strand, within Echvi_0282at 294.122 kb on - strand, within Echvi_0282at 294.128 kb on + strand, within Echvi_0282at 294.129 kb on - strand, within Echvi_0282at 294.129 kb on - strand, within Echvi_0282at 294.254 kb on - strandat 294.380 kb on + strandat 294.380 kb on + strandat 294.381 kb on - strandat 294.381 kb on - strandat 294.543 kb on - strandat 294.569 kb on - strandat 294.609 kb on + strandat 294.609 kb on + strandat 294.612 kb on + strandat 294.612 kb on + strandat 294.612 kb on + strandat 294.612 kb on + strandat 294.612 kb on + strandat 294.615 kb on - strandat 294.615 kb on - strandat 294.700 kb on - strandat 294.739 kb on + strand, within Echvi_0283at 294.739 kb on + strand, within Echvi_0283at 294.770 kb on + strand, within Echvi_0283at 294.770 kb on + strand, within Echvi_0283at 294.771 kb on - strand, within Echvi_0283at 294.841 kb on + strand, within Echvi_0283at 295.088 kb on + strand, within Echvi_0283at 295.090 kb on + strand, within Echvi_0283at 295.091 kb on - strand, within Echvi_0283at 295.102 kb on + strand, within Echvi_0283at 295.106 kb on + strand, within Echvi_0283at 295.184 kb on + strand, within Echvi_0283at 295.185 kb on - strand, within Echvi_0283at 295.302 kb on - strand, within Echvi_0283at 295.302 kb on - strand, within Echvi_0283at 295.308 kb on + strand, within Echvi_0283at 295.309 kb on - strand, within Echvi_0283at 295.309 kb on - strand, within Echvi_0283at 295.309 kb on - strand, within Echvi_0283at 295.309 kb on - strand, within Echvi_0283at 295.508 kb on - strand, within Echvi_0283at 295.589 kb on + strand, within Echvi_0283at 295.641 kb on - strand, within Echvi_0283at 295.748 kb on - strand, within Echvi_0283at 295.761 kb on - strand, within Echvi_0283at 295.761 kb on - strand, within Echvi_0283at 295.772 kb on - strand, within Echvi_0283at 295.816 kb on + strandat 295.826 kb on - strandat 295.924 kb on + strandat 296.084 kb on + strandat 296.084 kb on + strandat 296.085 kb on - strandat 296.085 kb on - strandat 296.115 kb on + strandat 296.115 kb on + strandat 296.115 kb on + strandat 296.115 kb on + strandat 296.116 kb on - strandat 296.116 kb on - strandat 296.116 kb on - strandat 296.148 kb on + strandat 296.725 kb on - strandat 296.725 kb on - strandat 296.725 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.06 mg/ml
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293,615 + Echvi_0282 0.71 -2.1
293,636 + Echvi_0282 0.72 +0.9
293,719 + Echvi_0282 0.75 -0.0
293,843 + Echvi_0282 0.78 -0.8
293,844 - Echvi_0282 0.78 +1.1
293,851 + Echvi_0282 0.79 +0.2
293,859 - Echvi_0282 0.79 +2.9
293,876 - Echvi_0282 0.79 -0.9
293,987 + Echvi_0282 0.83 +0.3
294,027 + Echvi_0282 0.84 +2.9
294,027 + Echvi_0282 0.84 +0.4
294,035 + Echvi_0282 0.84 -1.5
294,035 + Echvi_0282 0.84 +0.4
294,036 - Echvi_0282 0.84 -1.2
294,059 + Echvi_0282 0.85 +1.2
294,059 + Echvi_0282 0.85 +1.4
294,059 + Echvi_0282 0.85 -0.0
294,059 + Echvi_0282 0.85 -0.1
294,060 - Echvi_0282 0.85 +0.2
294,060 - Echvi_0282 0.85 +2.2
294,060 - Echvi_0282 0.85 -0.6
294,120 - Echvi_0282 0.87 +0.3
294,121 + Echvi_0282 0.87 -2.5
294,121 + Echvi_0282 0.87 -0.5
294,121 + Echvi_0282 0.87 +1.2
294,122 - Echvi_0282 0.87 -0.6
294,122 - Echvi_0282 0.87 -0.4
294,128 + Echvi_0282 0.87 +1.1
294,129 - Echvi_0282 0.87 -0.7
294,129 - Echvi_0282 0.87 +0.7
294,254 - +0.4
294,380 + -0.2
294,380 + -0.7
294,381 - -0.2
294,381 - +1.4
294,543 - -0.7
294,569 - -0.8
294,609 + -0.5
294,609 + -0.1
294,612 + +0.5
294,612 + +0.6
294,612 + +0.1
294,612 + -0.5
294,612 + -0.5
294,615 - -0.1
294,615 - +0.2
294,700 - -0.5
294,739 + Echvi_0283 0.11 -0.9
294,739 + Echvi_0283 0.11 -0.6
294,770 + Echvi_0283 0.14 +0.8
294,770 + Echvi_0283 0.14 +0.6
294,771 - Echvi_0283 0.14 +0.3
294,841 + Echvi_0283 0.19 +0.5
295,088 + Echvi_0283 0.37 -0.1
295,090 + Echvi_0283 0.37 -1.4
295,091 - Echvi_0283 0.37 -1.1
295,102 + Echvi_0283 0.38 +0.3
295,106 + Echvi_0283 0.39 +0.5
295,184 + Echvi_0283 0.44 +0.5
295,185 - Echvi_0283 0.44 +0.2
295,302 - Echvi_0283 0.53 -1.7
295,302 - Echvi_0283 0.53 -1.6
295,308 + Echvi_0283 0.54 +0.5
295,309 - Echvi_0283 0.54 -0.8
295,309 - Echvi_0283 0.54 -1.0
295,309 - Echvi_0283 0.54 -0.1
295,309 - Echvi_0283 0.54 -0.6
295,508 - Echvi_0283 0.68 -1.4
295,589 + Echvi_0283 0.74 -1.1
295,641 - Echvi_0283 0.78 -1.1
295,748 - Echvi_0283 0.86 -1.7
295,761 - Echvi_0283 0.87 +1.9
295,761 - Echvi_0283 0.87 -0.0
295,772 - Echvi_0283 0.88 +0.5
295,816 + -0.5
295,826 - -0.7
295,924 + -0.3
296,084 + +0.5
296,084 + -1.0
296,085 - -0.3
296,085 - +1.4
296,115 + +0.9
296,115 + -1.5
296,115 + -0.0
296,115 + +0.8
296,116 - +0.7
296,116 - -1.0
296,116 - +0.5
296,148 + +0.6
296,725 - +1.6
296,725 - -0.7
296,725 - +1.0

Or see this region's nucleotide sequence