Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0216

Experiment: m.b. Spectinomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0214 and Echvi_0215 overlap by 17 nucleotidesEchvi_0215 and Echvi_0216 overlap by 4 nucleotidesEchvi_0216 and Echvi_0217 overlap by 8 nucleotides Echvi_0214: Echvi_0214 - Putative transcription activator, at 233,915 to 234,568 _0214 Echvi_0215: Echvi_0215 - phosphomethylpyrimidine kinase, at 234,552 to 235,391 _0215 Echvi_0216: Echvi_0216 - thiamine-phosphate pyrophosphorylase, at 235,388 to 236,026 _0216 Echvi_0217: Echvi_0217 - hydroxyethylthiazole kinase, at 236,019 to 236,819 _0217 Position (kb) 235 236 237Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 234.457 kb on + strand, within Echvi_0214at 234.593 kb on - strandat 234.593 kb on - strandat 234.883 kb on - strand, within Echvi_0215at 234.883 kb on - strand, within Echvi_0215at 235.143 kb on + strand, within Echvi_0215at 235.224 kb on - strand, within Echvi_0215at 235.224 kb on - strand, within Echvi_0215at 235.230 kb on + strand, within Echvi_0215at 235.241 kb on + strand, within Echvi_0215at 235.253 kb on + strand, within Echvi_0215at 235.253 kb on + strand, within Echvi_0215at 235.254 kb on - strand, within Echvi_0215at 235.369 kb on + strandat 235.369 kb on + strandat 235.369 kb on + strandat 235.382 kb on + strandat 235.522 kb on + strand, within Echvi_0216at 235.523 kb on - strand, within Echvi_0216at 235.580 kb on + strand, within Echvi_0216at 235.581 kb on - strand, within Echvi_0216at 235.644 kb on + strand, within Echvi_0216at 235.644 kb on + strand, within Echvi_0216at 235.644 kb on + strand, within Echvi_0216at 235.645 kb on - strand, within Echvi_0216at 235.645 kb on - strand, within Echvi_0216at 235.672 kb on + strand, within Echvi_0216at 235.721 kb on + strand, within Echvi_0216at 235.744 kb on + strand, within Echvi_0216at 235.745 kb on - strand, within Echvi_0216at 235.745 kb on - strand, within Echvi_0216at 235.751 kb on - strand, within Echvi_0216at 235.763 kb on + strand, within Echvi_0216at 235.763 kb on + strand, within Echvi_0216at 235.763 kb on + strand, within Echvi_0216at 235.763 kb on + strand, within Echvi_0216at 235.763 kb on + strand, within Echvi_0216at 235.764 kb on - strand, within Echvi_0216at 235.764 kb on - strand, within Echvi_0216at 235.776 kb on + strand, within Echvi_0216at 235.807 kb on + strand, within Echvi_0216at 235.807 kb on + strand, within Echvi_0216at 235.807 kb on + strand, within Echvi_0216at 235.808 kb on - strand, within Echvi_0216at 235.808 kb on - strand, within Echvi_0216at 235.870 kb on + strand, within Echvi_0216at 235.996 kb on - strandat 235.996 kb on - strandat 236.020 kb on + strandat 236.020 kb on + strandat 236.020 kb on + strandat 236.077 kb on + strandat 236.090 kb on - strandat 236.091 kb on + strandat 236.092 kb on - strandat 236.092 kb on - strandat 236.092 kb on - strandat 236.092 kb on - strandat 236.092 kb on - strandat 236.095 kb on + strandat 236.095 kb on + strandat 236.095 kb on + strandat 236.096 kb on - strandat 236.096 kb on - strandat 236.096 kb on - strandat 236.096 kb on - strandat 236.096 kb on - strandat 236.136 kb on + strand, within Echvi_0217at 236.185 kb on + strand, within Echvi_0217at 236.309 kb on + strand, within Echvi_0217at 236.310 kb on - strand, within Echvi_0217at 236.310 kb on - strand, within Echvi_0217at 236.310 kb on - strand, within Echvi_0217at 236.311 kb on + strand, within Echvi_0217at 236.311 kb on + strand, within Echvi_0217at 236.312 kb on - strand, within Echvi_0217at 236.328 kb on + strand, within Echvi_0217at 236.328 kb on + strand, within Echvi_0217at 236.328 kb on + strand, within Echvi_0217at 236.329 kb on - strand, within Echvi_0217at 236.329 kb on - strand, within Echvi_0217at 236.329 kb on - strand, within Echvi_0217at 236.372 kb on - strand, within Echvi_0217at 236.468 kb on + strand, within Echvi_0217at 236.597 kb on + strand, within Echvi_0217at 236.622 kb on - strand, within Echvi_0217at 236.746 kb on + strandat 236.747 kb on - strandat 236.747 kb on - strandat 236.833 kb on - strandat 236.833 kb on - strandat 236.860 kb on - strandat 236.928 kb on - strandat 236.957 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.06 mg/ml
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234,457 + Echvi_0214 0.83 +1.3
234,593 - -0.9
234,593 - -0.9
234,883 - Echvi_0215 0.39 +0.1
234,883 - Echvi_0215 0.39 -1.5
235,143 + Echvi_0215 0.70 +0.1
235,224 - Echvi_0215 0.80 -1.3
235,224 - Echvi_0215 0.80 -0.5
235,230 + Echvi_0215 0.81 +1.3
235,241 + Echvi_0215 0.82 +0.9
235,253 + Echvi_0215 0.83 +0.5
235,253 + Echvi_0215 0.83 -1.7
235,254 - Echvi_0215 0.84 +1.3
235,369 + +0.1
235,369 + +0.1
235,369 + -0.8
235,382 + +0.5
235,522 + Echvi_0216 0.21 -1.6
235,523 - Echvi_0216 0.21 -0.5
235,580 + Echvi_0216 0.30 +2.4
235,581 - Echvi_0216 0.30 -0.8
235,644 + Echvi_0216 0.40 +0.6
235,644 + Echvi_0216 0.40 -1.2
235,644 + Echvi_0216 0.40 -0.6
235,645 - Echvi_0216 0.40 -2.4
235,645 - Echvi_0216 0.40 -1.3
235,672 + Echvi_0216 0.44 +0.5
235,721 + Echvi_0216 0.52 -1.2
235,744 + Echvi_0216 0.56 -0.9
235,745 - Echvi_0216 0.56 -1.4
235,745 - Echvi_0216 0.56 -0.3
235,751 - Echvi_0216 0.57 +0.7
235,763 + Echvi_0216 0.59 +1.4
235,763 + Echvi_0216 0.59 -1.1
235,763 + Echvi_0216 0.59 -1.3
235,763 + Echvi_0216 0.59 -0.4
235,763 + Echvi_0216 0.59 -0.3
235,764 - Echvi_0216 0.59 +0.6
235,764 - Echvi_0216 0.59 -0.5
235,776 + Echvi_0216 0.61 +0.8
235,807 + Echvi_0216 0.66 -0.5
235,807 + Echvi_0216 0.66 +1.0
235,807 + Echvi_0216 0.66 +0.4
235,808 - Echvi_0216 0.66 -0.3
235,808 - Echvi_0216 0.66 -0.1
235,870 + Echvi_0216 0.75 -1.3
235,996 - +0.4
235,996 - +1.5
236,020 + +0.2
236,020 + -1.5
236,020 + -0.6
236,077 + +1.3
236,090 - -0.5
236,091 + -0.5
236,092 - +0.9
236,092 - -0.7
236,092 - -0.1
236,092 - +0.3
236,092 - -2.0
236,095 + +0.3
236,095 + +2.4
236,095 + +0.3
236,096 - -1.1
236,096 - -3.0
236,096 - +1.0
236,096 - -0.6
236,096 - -1.1
236,136 + Echvi_0217 0.15 +0.1
236,185 + Echvi_0217 0.21 -0.2
236,309 + Echvi_0217 0.36 -0.4
236,310 - Echvi_0217 0.36 +0.3
236,310 - Echvi_0217 0.36 -0.7
236,310 - Echvi_0217 0.36 -0.9
236,311 + Echvi_0217 0.36 -0.6
236,311 + Echvi_0217 0.36 -0.5
236,312 - Echvi_0217 0.37 -3.1
236,328 + Echvi_0217 0.39 +0.3
236,328 + Echvi_0217 0.39 -0.2
236,328 + Echvi_0217 0.39 +0.2
236,329 - Echvi_0217 0.39 +0.5
236,329 - Echvi_0217 0.39 -0.8
236,329 - Echvi_0217 0.39 -0.9
236,372 - Echvi_0217 0.44 -0.5
236,468 + Echvi_0217 0.56 +0.1
236,597 + Echvi_0217 0.72 +0.5
236,622 - Echvi_0217 0.75 +0.4
236,746 + +1.0
236,747 - -1.3
236,747 - -0.6
236,833 - -0.7
236,833 - +1.6
236,860 - +0.3
236,928 - +0.9
236,957 - -0.8

Or see this region's nucleotide sequence