Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0192

Experiment: m.b. Spectinomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0191 and Echvi_0192 are separated by 322 nucleotidesEchvi_0192 and Echvi_0193 are separated by 374 nucleotides Echvi_0191: Echvi_0191 - acetyl-CoA carboxylase, biotin carboxylase subunit, at 207,503 to 208,852 _0191 Echvi_0192: Echvi_0192 - hypothetical protein, at 209,175 to 209,792 _0192 Echvi_0193: Echvi_0193 - NAD dependent epimerase/dehydratase family., at 210,167 to 211,129 _0193 Position (kb) 209 210Strain fitness (log2 ratio) -2 -1 0 1 2at 208.818 kb on + strandat 208.872 kb on + strandat 208.873 kb on - strandat 208.878 kb on - strandat 208.903 kb on - strandat 208.903 kb on - strandat 208.991 kb on - strandat 208.991 kb on - strandat 209.002 kb on - strandat 209.048 kb on + strandat 209.109 kb on - strandat 209.109 kb on - strandat 209.165 kb on + strandat 209.176 kb on + strandat 209.224 kb on + strandat 209.251 kb on + strand, within Echvi_0192at 209.252 kb on - strand, within Echvi_0192at 209.274 kb on - strand, within Echvi_0192at 209.274 kb on - strand, within Echvi_0192at 209.287 kb on - strand, within Echvi_0192at 209.294 kb on + strand, within Echvi_0192at 209.344 kb on + strand, within Echvi_0192at 209.383 kb on + strand, within Echvi_0192at 209.390 kb on + strand, within Echvi_0192at 209.400 kb on + strand, within Echvi_0192at 209.400 kb on + strand, within Echvi_0192at 209.401 kb on - strand, within Echvi_0192at 209.412 kb on + strand, within Echvi_0192at 209.418 kb on - strand, within Echvi_0192at 209.448 kb on + strand, within Echvi_0192at 209.528 kb on - strand, within Echvi_0192at 209.594 kb on + strand, within Echvi_0192at 209.637 kb on - strand, within Echvi_0192at 209.640 kb on + strand, within Echvi_0192at 209.640 kb on + strand, within Echvi_0192at 209.640 kb on + strand, within Echvi_0192at 209.731 kb on - strandat 209.772 kb on - strandat 209.778 kb on - strandat 209.778 kb on - strandat 209.932 kb on + strandat 209.956 kb on + strandat 210.025 kb on + strandat 210.026 kb on - strandat 210.026 kb on - strandat 210.026 kb on - strandat 210.031 kb on + strandat 210.108 kb on + strandat 210.118 kb on - strandat 210.119 kb on + strandat 210.127 kb on + strandat 210.133 kb on - strandat 210.152 kb on - strandat 210.230 kb on + strandat 210.230 kb on + strandat 210.231 kb on - strandat 210.245 kb on - strandat 210.349 kb on + strand, within Echvi_0193at 210.349 kb on + strand, within Echvi_0193at 210.350 kb on - strand, within Echvi_0193at 210.366 kb on + strand, within Echvi_0193at 210.377 kb on + strand, within Echvi_0193at 210.377 kb on + strand, within Echvi_0193at 210.377 kb on + strand, within Echvi_0193at 210.377 kb on + strand, within Echvi_0193at 210.378 kb on - strand, within Echvi_0193at 210.476 kb on - strand, within Echvi_0193at 210.476 kb on - strand, within Echvi_0193at 210.476 kb on - strand, within Echvi_0193at 210.476 kb on - strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.477 kb on + strand, within Echvi_0193at 210.478 kb on - strand, within Echvi_0193at 210.478 kb on - strand, within Echvi_0193at 210.478 kb on - strand, within Echvi_0193at 210.478 kb on - strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.479 kb on + strand, within Echvi_0193at 210.480 kb on - strand, within Echvi_0193at 210.480 kb on - strand, within Echvi_0193at 210.480 kb on - strand, within Echvi_0193at 210.480 kb on - strandat 210.480 kb on - strand, within Echvi_0193at 210.485 kb on + strand, within Echvi_0193at 210.485 kb on + strand, within Echvi_0193at 210.485 kb on + strand, within Echvi_0193at 210.485 kb on + strand, within Echvi_0193at 210.486 kb on - strand, within Echvi_0193at 210.486 kb on - strand, within Echvi_0193at 210.486 kb on - strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.497 kb on + strand, within Echvi_0193at 210.498 kb on - strand, within Echvi_0193at 210.498 kb on - strand, within Echvi_0193at 210.498 kb on - strand, within Echvi_0193at 210.508 kb on + strand, within Echvi_0193at 210.508 kb on + strand, within Echvi_0193at 210.508 kb on + strand, within Echvi_0193at 210.509 kb on - strand, within Echvi_0193at 210.509 kb on - strand, within Echvi_0193at 210.520 kb on + strand, within Echvi_0193at 210.592 kb on + strandat 210.593 kb on - strand, within Echvi_0193at 210.593 kb on - strand, within Echvi_0193at 210.639 kb on - strand, within Echvi_0193at 210.649 kb on + strand, within Echvi_0193at 210.649 kb on + strand, within Echvi_0193at 210.650 kb on - strand, within Echvi_0193at 210.650 kb on - strand, within Echvi_0193at 210.650 kb on - strand, within Echvi_0193at 210.669 kb on + strand, within Echvi_0193at 210.669 kb on + strand, within Echvi_0193at 210.670 kb on - strand, within Echvi_0193at 210.754 kb on + strand, within Echvi_0193

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.06 mg/ml
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208,818 + +1.0
208,872 + -1.6
208,873 - -0.1
208,878 - -0.1
208,903 - +0.5
208,903 - +0.1
208,991 - +0.9
208,991 - -1.6
209,002 - -0.8
209,048 + +0.1
209,109 - -0.8
209,109 - -0.6
209,165 + -0.6
209,176 + +0.4
209,224 + +1.0
209,251 + Echvi_0192 0.12 +0.4
209,252 - Echvi_0192 0.12 -0.2
209,274 - Echvi_0192 0.16 -0.2
209,274 - Echvi_0192 0.16 -0.6
209,287 - Echvi_0192 0.18 -1.3
209,294 + Echvi_0192 0.19 +0.1
209,344 + Echvi_0192 0.27 -0.7
209,383 + Echvi_0192 0.34 -0.6
209,390 + Echvi_0192 0.35 +0.9
209,400 + Echvi_0192 0.36 +0.2
209,400 + Echvi_0192 0.36 -0.5
209,401 - Echvi_0192 0.37 -1.6
209,412 + Echvi_0192 0.38 -0.2
209,418 - Echvi_0192 0.39 -1.6
209,448 + Echvi_0192 0.44 +0.0
209,528 - Echvi_0192 0.57 -1.3
209,594 + Echvi_0192 0.68 -0.4
209,637 - Echvi_0192 0.75 +1.9
209,640 + Echvi_0192 0.75 -1.0
209,640 + Echvi_0192 0.75 -0.3
209,640 + Echvi_0192 0.75 +0.2
209,731 - -2.5
209,772 - -0.3
209,778 - -0.5
209,778 - -0.7
209,932 + -0.7
209,956 + +0.3
210,025 + +0.3
210,026 - -1.0
210,026 - -0.7
210,026 - -0.5
210,031 + -0.2
210,108 + -0.8
210,118 - +1.6
210,119 + +0.3
210,127 + -2.7
210,133 - +0.8
210,152 - -0.4
210,230 + +0.7
210,230 + +1.9
210,231 - +0.5
210,245 - +0.1
210,349 + Echvi_0193 0.19 +0.3
210,349 + Echvi_0193 0.19 -0.6
210,350 - Echvi_0193 0.19 +0.2
210,366 + Echvi_0193 0.21 -0.9
210,377 + Echvi_0193 0.22 -0.9
210,377 + Echvi_0193 0.22 +0.6
210,377 + Echvi_0193 0.22 +0.7
210,377 + Echvi_0193 0.22 +0.0
210,378 - Echvi_0193 0.22 +0.1
210,476 - Echvi_0193 0.32 -0.1
210,476 - Echvi_0193 0.32 -1.4
210,476 - Echvi_0193 0.32 +1.2
210,476 - Echvi_0193 0.32 +0.0
210,477 + Echvi_0193 0.32 -0.9
210,477 + Echvi_0193 0.32 +0.1
210,477 + Echvi_0193 0.32 +0.7
210,477 + Echvi_0193 0.32 -1.1
210,477 + Echvi_0193 0.32 -0.0
210,477 + Echvi_0193 0.32 -0.8
210,478 - Echvi_0193 0.32 +0.3
210,478 - Echvi_0193 0.32 -0.1
210,478 - Echvi_0193 0.32 +0.9
210,478 - Echvi_0193 0.32 -1.8
210,479 + Echvi_0193 0.32 +0.5
210,479 + Echvi_0193 0.32 -1.1
210,479 + Echvi_0193 0.32 -2.0
210,479 + Echvi_0193 0.32 +0.3
210,479 + Echvi_0193 0.32 -1.1
210,479 + Echvi_0193 0.32 +0.4
210,480 - Echvi_0193 0.33 +0.3
210,480 - Echvi_0193 0.33 -0.4
210,480 - Echvi_0193 0.33 -1.2
210,480 - +1.9
210,480 - Echvi_0193 0.33 +0.6
210,485 + Echvi_0193 0.33 -0.9
210,485 + Echvi_0193 0.33 +1.0
210,485 + Echvi_0193 0.33 -2.3
210,485 + Echvi_0193 0.33 -0.9
210,486 - Echvi_0193 0.33 +0.4
210,486 - Echvi_0193 0.33 +0.5
210,486 - Echvi_0193 0.33 -1.0
210,497 + Echvi_0193 0.34 -0.5
210,497 + Echvi_0193 0.34 -0.4
210,497 + Echvi_0193 0.34 +0.3
210,497 + Echvi_0193 0.34 +0.4
210,497 + Echvi_0193 0.34 +0.1
210,497 + Echvi_0193 0.34 -2.0
210,498 - Echvi_0193 0.34 -0.6
210,498 - Echvi_0193 0.34 -1.4
210,498 - Echvi_0193 0.34 -0.0
210,508 + Echvi_0193 0.35 -0.9
210,508 + Echvi_0193 0.35 -0.7
210,508 + Echvi_0193 0.35 -0.0
210,509 - Echvi_0193 0.36 -0.0
210,509 - Echvi_0193 0.36 +0.7
210,520 + Echvi_0193 0.37 +0.5
210,592 + +1.9
210,593 - Echvi_0193 0.44 +0.8
210,593 - Echvi_0193 0.44 -0.8
210,639 - Echvi_0193 0.49 +0.0
210,649 + Echvi_0193 0.50 +0.1
210,649 + Echvi_0193 0.50 -1.1
210,650 - Echvi_0193 0.50 -1.5
210,650 - Echvi_0193 0.50 +0.7
210,650 - Echvi_0193 0.50 -1.5
210,669 + Echvi_0193 0.52 -0.0
210,669 + Echvi_0193 0.52 +1.0
210,670 - Echvi_0193 0.52 -0.0
210,754 + Echvi_0193 0.61 +0.2

Or see this region's nucleotide sequence