Experiment: L-ascorbate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3562 and Atu3563 are separated by 54 nucleotides Atu3563 and Atu3564 are separated by 271 nucleotides Atu3564 and Atu3565 are separated by 77 nucleotides
Atu3562: Atu3562 - hypothetical protein, at 615,816 to 616,241
Atu3562
Atu3563: Atu3563 - transcription elongation factor regulatory protein, at 616,296 to 616,778
Atu3563
Atu3564: Atu3564 - endo-1,3-1,4-beta-glycanase, at 617,050 to 618,447
Atu3564
Atu3565: Atu3565 - hypothetical protein, at 618,525 to 619,505
Atu3565
Position (kb) 617
618
619 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 616.159 kb on - strand, within Atu3562 at 616.159 kb on - strand, within Atu3562 at 616.260 kb on - strand at 616.267 kb on - strand at 616.387 kb on + strand, within Atu3563 at 616.387 kb on + strand, within Atu3563 at 616.424 kb on - strand, within Atu3563 at 616.424 kb on - strand, within Atu3563 at 616.425 kb on - strand, within Atu3563 at 616.527 kb on - strand, within Atu3563 at 616.527 kb on - strand, within Atu3563 at 616.542 kb on - strand, within Atu3563 at 616.542 kb on - strand, within Atu3563 at 616.615 kb on + strand, within Atu3563 at 616.736 kb on - strand at 616.758 kb on - strand at 616.769 kb on - strand at 616.787 kb on + strand at 616.850 kb on + strand at 616.850 kb on + strand at 616.948 kb on + strand at 617.004 kb on + strand at 617.012 kb on - strand at 617.079 kb on + strand at 617.086 kb on + strand at 617.086 kb on + strand at 617.094 kb on - strand at 617.257 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.309 kb on - strand, within Atu3564 at 617.310 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.481 kb on + strand, within Atu3564 at 617.502 kb on - strand, within Atu3564 at 617.517 kb on + strand, within Atu3564 at 617.592 kb on - strand, within Atu3564 at 617.638 kb on + strand, within Atu3564 at 617.712 kb on - strand, within Atu3564 at 617.819 kb on - strand, within Atu3564 at 617.949 kb on - strand, within Atu3564 at 617.955 kb on - strand, within Atu3564 at 617.999 kb on + strand, within Atu3564 at 618.146 kb on - strand, within Atu3564 at 618.146 kb on - strand, within Atu3564 at 618.153 kb on + strand, within Atu3564 at 618.201 kb on + strand, within Atu3564 at 618.222 kb on + strand, within Atu3564 at 618.234 kb on + strand, within Atu3564 at 618.307 kb on + strand, within Atu3564 at 618.315 kb on - strand at 618.419 kb on - strand at 618.487 kb on + strand at 618.489 kb on + strand at 618.495 kb on - strand at 618.510 kb on - strand at 618.540 kb on - strand at 618.615 kb on - strand at 618.648 kb on - strand, within Atu3565 at 618.723 kb on + strand, within Atu3565 at 618.731 kb on - strand, within Atu3565 at 618.902 kb on - strand, within Atu3565 at 618.909 kb on - strand, within Atu3565 at 618.992 kb on + strand, within Atu3565 at 618.992 kb on + strand, within Atu3565 at 619.006 kb on + strand, within Atu3565 at 619.014 kb on - strand, within Atu3565 at 619.063 kb on + strand, within Atu3565 at 619.102 kb on + strand, within Atu3565 at 619.110 kb on - strand, within Atu3565 at 619.175 kb on + strand, within Atu3565 at 619.211 kb on + strand, within Atu3565 at 619.211 kb on + strand, within Atu3565 at 619.219 kb on - strand, within Atu3565 at 619.228 kb on + strand, within Atu3565 at 619.229 kb on - strand, within Atu3565 at 619.236 kb on - strand, within Atu3565 at 619.238 kb on + strand, within Atu3565
Per-strain Table
Position Strand Gene LocusTag Fraction L-ascorbate (C) remove 616,159 - Atu3562 0.81 -0.8 616,159 - Atu3562 0.81 -0.2 616,260 - +0.3 616,267 - +0.4 616,387 + Atu3563 0.19 +1.3 616,387 + Atu3563 0.19 +0.1 616,424 - Atu3563 0.27 +1.7 616,424 - Atu3563 0.27 +0.1 616,425 - Atu3563 0.27 +0.3 616,527 - Atu3563 0.48 +0.2 616,527 - Atu3563 0.48 -0.7 616,542 - Atu3563 0.51 +0.4 616,542 - Atu3563 0.51 +0.2 616,615 + Atu3563 0.66 +0.4 616,736 - -0.4 616,758 - +0.1 616,769 - -0.1 616,787 + +0.2 616,850 + +0.5 616,850 + -0.3 616,948 + -0.3 617,004 + +0.1 617,012 - -0.1 617,079 + +0.3 617,086 + +0.6 617,086 + -0.3 617,094 - -0.3 617,257 + Atu3564 0.15 +0.1 617,303 + Atu3564 0.18 -0.5 617,303 + Atu3564 0.18 -0.0 617,303 + Atu3564 0.18 -0.0 617,303 + Atu3564 0.18 -0.2 617,303 + Atu3564 0.18 -0.3 617,303 + Atu3564 0.18 +0.6 617,303 + Atu3564 0.18 +0.7 617,303 + Atu3564 0.18 -0.0 617,303 + Atu3564 0.18 -0.0 617,309 - Atu3564 0.19 +0.6 617,310 - Atu3564 0.19 -0.5 617,311 - Atu3564 0.19 +0.0 617,311 - Atu3564 0.19 +1.2 617,311 - Atu3564 0.19 +1.2 617,311 - Atu3564 0.19 +0.7 617,311 - Atu3564 0.19 -0.0 617,311 - Atu3564 0.19 +0.3 617,311 - Atu3564 0.19 +0.3 617,311 - Atu3564 0.19 +0.0 617,311 - Atu3564 0.19 +0.0 617,311 - Atu3564 0.19 -0.1 617,481 + Atu3564 0.31 +0.7 617,502 - Atu3564 0.32 +0.5 617,517 + Atu3564 0.33 +0.2 617,592 - Atu3564 0.39 -2.2 617,638 + Atu3564 0.42 +0.3 617,712 - Atu3564 0.47 +0.0 617,819 - Atu3564 0.55 +0.4 617,949 - Atu3564 0.64 +0.3 617,955 - Atu3564 0.65 +0.7 617,999 + Atu3564 0.68 +0.3 618,146 - Atu3564 0.78 +0.3 618,146 - Atu3564 0.78 +0.1 618,153 + Atu3564 0.79 +0.0 618,201 + Atu3564 0.82 +0.3 618,222 + Atu3564 0.84 +1.0 618,234 + Atu3564 0.85 +0.5 618,307 + Atu3564 0.90 +0.8 618,315 - +0.5 618,419 - +0.2 618,487 + +0.0 618,489 + +0.6 618,495 - +0.7 618,510 - +0.2 618,540 - +0.5 618,615 - -0.3 618,648 - Atu3565 0.13 +1.1 618,723 + Atu3565 0.20 +1.1 618,731 - Atu3565 0.21 -0.2 618,902 - Atu3565 0.38 +0.9 618,909 - Atu3565 0.39 +0.1 618,992 + Atu3565 0.48 +0.3 618,992 + Atu3565 0.48 +0.3 619,006 + Atu3565 0.49 +0.5 619,014 - Atu3565 0.50 +1.0 619,063 + Atu3565 0.55 +0.0 619,102 + Atu3565 0.59 -0.6 619,110 - Atu3565 0.60 +3.1 619,175 + Atu3565 0.66 -0.2 619,211 + Atu3565 0.70 -0.0 619,211 + Atu3565 0.70 -0.2 619,219 - Atu3565 0.71 -0.4 619,228 + Atu3565 0.72 -0.4 619,229 - Atu3565 0.72 +0.6 619,236 - Atu3565 0.72 +0.4 619,238 + Atu3565 0.73 -0.5
Or see this region's nucleotide sequence