Experiment: L-ascorbate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0647 and Atu0648 are separated by 201 nucleotides Atu0648 and Atu0649 are separated by 168 nucleotides
Atu0647: Atu0647 - phosphoribosylamine--glycine ligase, at 637,485 to 638,756
Atu0647
Atu0648: Atu0648 - hypothetical protein, at 638,958 to 641,282
Atu0648
Atu0649: Atu0649 - cyclopropane-fatty-acyl-phospholipid synthase, at 641,451 to 642,707
Atu0649
Position (kb) 638
639
640
641
642 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 638.216 kb on + strand, within Atu0647 at 638.216 kb on + strand, within Atu0647 at 638.221 kb on + strand, within Atu0647 at 638.366 kb on - strand, within Atu0647 at 638.384 kb on + strand, within Atu0647 at 638.415 kb on + strand, within Atu0647 at 638.483 kb on + strand, within Atu0647 at 638.527 kb on + strand, within Atu0647 at 638.615 kb on - strand, within Atu0647 at 638.627 kb on + strand, within Atu0647 at 638.633 kb on + strand at 638.758 kb on + strand at 638.758 kb on + strand at 638.870 kb on - strand at 638.901 kb on - strand at 638.941 kb on + strand at 638.946 kb on + strand at 638.954 kb on - strand at 638.962 kb on - strand at 638.988 kb on + strand at 638.988 kb on + strand at 638.995 kb on - strand at 639.023 kb on + strand at 639.023 kb on + strand at 639.031 kb on - strand at 639.031 kb on - strand at 639.041 kb on - strand at 639.060 kb on + strand at 639.060 kb on + strand at 639.068 kb on - strand at 639.109 kb on + strand at 639.111 kb on - strand at 639.248 kb on + strand, within Atu0648 at 639.254 kb on + strand, within Atu0648 at 639.403 kb on + strand, within Atu0648 at 639.431 kb on + strand, within Atu0648 at 639.456 kb on + strand, within Atu0648 at 639.589 kb on + strand, within Atu0648 at 639.790 kb on + strand, within Atu0648 at 639.807 kb on - strand, within Atu0648 at 639.835 kb on + strand, within Atu0648 at 639.869 kb on - strand, within Atu0648 at 639.948 kb on - strand, within Atu0648 at 639.963 kb on + strand, within Atu0648 at 639.971 kb on - strand, within Atu0648 at 640.017 kb on + strand, within Atu0648 at 640.017 kb on + strand, within Atu0648 at 640.018 kb on - strand, within Atu0648 at 640.021 kb on + strand, within Atu0648 at 640.058 kb on + strand, within Atu0648 at 640.237 kb on - strand, within Atu0648 at 640.298 kb on + strand, within Atu0648 at 640.314 kb on + strand, within Atu0648 at 640.337 kb on + strand, within Atu0648 at 640.363 kb on + strand, within Atu0648 at 640.463 kb on - strand, within Atu0648 at 640.588 kb on + strand, within Atu0648 at 640.680 kb on + strand, within Atu0648 at 640.725 kb on - strand, within Atu0648 at 640.797 kb on + strand, within Atu0648 at 640.851 kb on - strand, within Atu0648 at 640.893 kb on + strand, within Atu0648 at 641.054 kb on - strand at 641.145 kb on - strand at 641.189 kb on + strand at 641.276 kb on + strand at 641.283 kb on + strand at 641.434 kb on - strand at 641.633 kb on + strand, within Atu0649 at 641.690 kb on + strand, within Atu0649 at 641.696 kb on + strand, within Atu0649 at 641.696 kb on + strand, within Atu0649 at 641.748 kb on + strand, within Atu0649 at 641.849 kb on + strand, within Atu0649 at 641.975 kb on - strand, within Atu0649 at 641.975 kb on - strand, within Atu0649 at 642.042 kb on - strand, within Atu0649 at 642.047 kb on - strand, within Atu0649 at 642.077 kb on - strand, within Atu0649 at 642.238 kb on + strand, within Atu0649 at 642.249 kb on + strand, within Atu0649
Per-strain Table
Position Strand Gene LocusTag Fraction L-ascorbate (C) remove 638,216 + Atu0647 0.57 -0.4 638,216 + Atu0647 0.57 -3.0 638,221 + Atu0647 0.58 -2.7 638,366 - Atu0647 0.69 +0.0 638,384 + Atu0647 0.71 -2.9 638,415 + Atu0647 0.73 -2.7 638,483 + Atu0647 0.78 -0.7 638,527 + Atu0647 0.82 -2.3 638,615 - Atu0647 0.89 -5.3 638,627 + Atu0647 0.90 -1.7 638,633 + -3.5 638,758 + -0.6 638,758 + -0.8 638,870 - -0.3 638,901 - +0.4 638,941 + -0.7 638,946 + -0.6 638,954 - +1.2 638,962 - -0.2 638,988 + +0.0 638,988 + +0.1 638,995 - +0.7 639,023 + +0.7 639,023 + +1.2 639,031 - +0.2 639,031 - +0.3 639,041 - -0.6 639,060 + +0.2 639,060 + +1.0 639,068 - +1.1 639,109 + +0.3 639,111 - +0.1 639,248 + Atu0648 0.12 +0.1 639,254 + Atu0648 0.13 +1.2 639,403 + Atu0648 0.19 +0.4 639,431 + Atu0648 0.20 +0.4 639,456 + Atu0648 0.21 -0.1 639,589 + Atu0648 0.27 +0.3 639,790 + Atu0648 0.36 -1.4 639,807 - Atu0648 0.37 +0.5 639,835 + Atu0648 0.38 +0.5 639,869 - Atu0648 0.39 +0.1 639,948 - Atu0648 0.43 -0.3 639,963 + Atu0648 0.43 +1.2 639,971 - Atu0648 0.44 +0.6 640,017 + Atu0648 0.46 +0.4 640,017 + Atu0648 0.46 +1.6 640,018 - Atu0648 0.46 +0.8 640,021 + Atu0648 0.46 +0.4 640,058 + Atu0648 0.47 +0.4 640,237 - Atu0648 0.55 +2.9 640,298 + Atu0648 0.58 +0.8 640,314 + Atu0648 0.58 +0.1 640,337 + Atu0648 0.59 +1.2 640,363 + Atu0648 0.60 +0.1 640,463 - Atu0648 0.65 +0.8 640,588 + Atu0648 0.70 -1.2 640,680 + Atu0648 0.74 +0.5 640,725 - Atu0648 0.76 +0.5 640,797 + Atu0648 0.79 -0.3 640,851 - Atu0648 0.81 -0.9 640,893 + Atu0648 0.83 +0.1 641,054 - +0.1 641,145 - +1.0 641,189 + +0.4 641,276 + -0.0 641,283 + -0.5 641,434 - -0.0 641,633 + Atu0649 0.14 +1.0 641,690 + Atu0649 0.19 +0.3 641,696 + Atu0649 0.19 +1.4 641,696 + Atu0649 0.19 +0.5 641,748 + Atu0649 0.24 -0.1 641,849 + Atu0649 0.32 +0.9 641,975 - Atu0649 0.42 -0.4 641,975 - Atu0649 0.42 -0.3 642,042 - Atu0649 0.47 +0.7 642,047 - Atu0649 0.47 +0.6 642,077 - Atu0649 0.50 +1.0 642,238 + Atu0649 0.63 +1.4 642,249 + Atu0649 0.63 +0.1
Or see this region's nucleotide sequence