Strain Fitness in Escherichia coli BW25113 around b2318

Experiment: Adenosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntaccD and dedA are separated by 155 nucleotidesdedA and truA are separated by 82 nucleotidestruA and usg overlap by 1 nucleotides b2316: accD - acetyl-CoA carboxylase subunit beta (NCBI), at 2,431,034 to 2,431,948 accD b2317: dedA - conserved inner membrane protein (NCBI), at 2,432,104 to 2,432,763 dedA b2318: truA - tRNA pseudouridine synthase A (NCBI), at 2,432,846 to 2,433,658 truA b2319: usg - hypothetical protein (NCBI), at 2,433,658 to 2,434,671 usg Position (kb) 2432 2433 2434Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2432.025 kb on - strandat 2432.025 kb on - strandat 2432.196 kb on + strand, within dedAat 2432.269 kb on - strand, within dedAat 2432.269 kb on - strand, within dedAat 2432.290 kb on - strand, within dedAat 2432.290 kb on - strand, within dedAat 2432.494 kb on + strand, within dedAat 2432.650 kb on + strand, within dedAat 2432.650 kb on + strand, within dedAat 2432.800 kb on + strandat 2432.808 kb on - strandat 2432.808 kb on - strandat 2433.004 kb on + strand, within truAat 2433.141 kb on + strand, within truAat 2433.141 kb on + strand, within truAat 2433.157 kb on + strand, within truAat 2433.160 kb on - strand, within truAat 2433.160 kb on - strand, within truAat 2433.170 kb on - strand, within truAat 2433.363 kb on - strandat 2433.465 kb on - strand, within truAat 2433.465 kb on - strand, within truAat 2433.465 kb on - strand, within truAat 2433.465 kb on - strand, within truAat 2433.600 kb on + strandat 2433.600 kb on + strandat 2433.656 kb on + strandat 2433.664 kb on - strandat 2433.670 kb on + strandat 2433.670 kb on + strandat 2433.678 kb on - strandat 2433.753 kb on - strandat 2433.846 kb on + strand, within usgat 2433.853 kb on - strand, within usgat 2433.853 kb on - strand, within usgat 2433.910 kb on + strand, within usgat 2433.943 kb on + strand, within usgat 2433.952 kb on - strand, within usgat 2433.952 kb on - strand, within usgat 2434.057 kb on + strand, within usgat 2434.167 kb on - strand, within usgat 2434.287 kb on - strand, within usgat 2434.287 kb on - strand, within usgat 2434.339 kb on + strand, within usgat 2434.360 kb on + strand, within usgat 2434.626 kb on - strandat 2434.647 kb on + strandat 2434.647 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
remove
2,432,025 - -0.6
2,432,025 - -0.6
2,432,196 + dedA b2317 0.14 +1.7
2,432,269 - dedA b2317 0.25 +1.1
2,432,269 - dedA b2317 0.25 +0.6
2,432,290 - dedA b2317 0.28 +0.8
2,432,290 - dedA b2317 0.28 +0.4
2,432,494 + dedA b2317 0.59 -0.4
2,432,650 + dedA b2317 0.83 +0.6
2,432,650 + dedA b2317 0.83 +2.1
2,432,800 + +0.4
2,432,808 - -0.4
2,432,808 - -0.2
2,433,004 + truA b2318 0.19 -2.3
2,433,141 + truA b2318 0.36 -1.4
2,433,141 + truA b2318 0.36 -3.8
2,433,157 + truA b2318 0.38 -1.4
2,433,160 - truA b2318 0.39 -1.8
2,433,160 - truA b2318 0.39 -2.3
2,433,170 - truA b2318 0.40 -1.4
2,433,363 - -1.0
2,433,465 - truA b2318 0.76 -2.4
2,433,465 - truA b2318 0.76 -2.9
2,433,465 - truA b2318 0.76 -2.4
2,433,465 - truA b2318 0.76 -1.8
2,433,600 + -1.8
2,433,600 + -2.9
2,433,656 + -0.4
2,433,664 - -0.2
2,433,670 + -1.8
2,433,670 + -0.4
2,433,678 - -2.6
2,433,753 - +1.2
2,433,846 + usg b2319 0.19 -1.4
2,433,853 - usg b2319 0.19 -0.4
2,433,853 - usg b2319 0.19 -0.4
2,433,910 + usg b2319 0.25 -2.3
2,433,943 + usg b2319 0.28 -1.8
2,433,952 - usg b2319 0.29 +2.1
2,433,952 - usg b2319 0.29 +0.4
2,434,057 + usg b2319 0.39 -2.9
2,434,167 - usg b2319 0.50 +0.1
2,434,287 - usg b2319 0.62 +0.1
2,434,287 - usg b2319 0.62 -2.6
2,434,339 + usg b2319 0.67 -3.1
2,434,360 + usg b2319 0.69 -1.1
2,434,626 - +2.1
2,434,647 + -2.8
2,434,647 + -1.8

Or see this region's nucleotide sequence