Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pinQ and tfaQ are separated by 97 nucleotides tfaQ and stfQ overlap by 1 nucleotides stfQ and nohA overlap by 8 nucleotides nohA and ynfO are separated by 388 nucleotides
b1545: pinQ - Qin prophage; predicted site-specific recombinase (NCBI), at 1,631,646 to 1,632,236
pinQ
b1546: tfaQ - Qin prophage; predicted tail fibre assembly protein (NCBI), at 1,632,334 to 1,632,909
tfaQ
b1547: stfQ - Qin prophage; predicted side tail fibre assembly protein (NCBI), at 1,632,909 to 1,633,871
stfQ
b1548: nohA - Qin prophage; predicted packaging protein (RefSeq), at 1,633,864 to 1,634,391
nohA
b4533: ynfO - Qin prophage; predicted protein (NCBI), at 1,634,780 to 1,635,013
ynfO
Position (kb)
1632
1633
1634 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1632.142 kb on - strand, within pinQ at 1632.995 kb on + strand at 1633.092 kb on - strand, within stfQ at 1633.234 kb on + strand, within stfQ at 1633.234 kb on + strand, within stfQ at 1633.282 kb on - strand, within stfQ at 1633.282 kb on - strand, within stfQ at 1633.282 kb on - strand, within stfQ at 1633.716 kb on + strand, within stfQ at 1633.724 kb on - strand, within stfQ at 1633.724 kb on - strand, within stfQ at 1633.829 kb on - strand at 1634.153 kb on + strand, within nohA at 1634.153 kb on + strand, within nohA
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 1,632,142 - pinQ b1545 0.84 -1.8 1,632,995 + +0.8 1,633,092 - stfQ b1547 0.19 -0.0 1,633,234 + stfQ b1547 0.34 +0.5 1,633,234 + stfQ b1547 0.34 +1.7 1,633,282 - stfQ b1547 0.39 -0.1 1,633,282 - stfQ b1547 0.39 +1.0 1,633,282 - stfQ b1547 0.39 +1.6 1,633,716 + stfQ b1547 0.84 -0.1 1,633,724 - stfQ b1547 0.85 +1.2 1,633,724 - stfQ b1547 0.85 +2.5 1,633,829 - -0.6 1,634,153 + nohA b1548 0.55 -0.5 1,634,153 + nohA b1548 0.55 -0.3
Or see this region's nucleotide sequence