Experiment: L-Lactate (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00429 and PFR28_00430 are separated by 467 nucleotides PFR28_00430 and PFR28_00431 are separated by 480 nucleotides
PFR28_00429: PFR28_00429 - DNA mismatch repair protein MutS, at 470,110 to 472,689
_00429
PFR28_00430: PFR28_00430 - IS110 family transposase ISPfl1, at 473,157 to 474,179
_00430
PFR28_00431: PFR28_00431 - HTH-type transcriptional regulator PrtR, at 474,660 to 475,394
_00431
Position (kb) 473
474
475 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 472.469 kb on + strand at 472.470 kb on - strand at 472.470 kb on - strand at 472.577 kb on + strand at 472.577 kb on + strand at 472.577 kb on + strand at 472.577 kb on + strand at 472.578 kb on - strand at 472.578 kb on - strand at 472.596 kb on - strand at 472.637 kb on + strand at 472.770 kb on - strand at 472.821 kb on + strand at 472.846 kb on + strand at 472.847 kb on - strand at 472.847 kb on - strand at 472.900 kb on - strand at 472.903 kb on - strand at 472.903 kb on - strand at 472.903 kb on - strand at 472.910 kb on - strand at 472.910 kb on - strand at 472.910 kb on - strand at 472.910 kb on - strand at 473.945 kb on - strand, within PFR28_00430 at 474.301 kb on + strand at 474.301 kb on + strand at 474.302 kb on - strand at 474.302 kb on - strand at 474.302 kb on - strand at 474.302 kb on - strand at 474.302 kb on - strand at 474.302 kb on - strand at 474.351 kb on - strand at 474.373 kb on + strand at 474.374 kb on - strand at 474.374 kb on - strand at 474.439 kb on + strand at 474.449 kb on + strand at 474.449 kb on + strand at 474.449 kb on + strand at 474.449 kb on + strand at 474.449 kb on + strand at 474.449 kb on + strand at 474.449 kb on + strand at 474.450 kb on - strand at 474.450 kb on - strand at 474.450 kb on - strand at 474.450 kb on - strand at 474.450 kb on - strand at 474.466 kb on + strand at 474.466 kb on + strand at 474.467 kb on - strand at 474.467 kb on - strand at 474.467 kb on - strand at 474.467 kb on - strand at 474.467 kb on - strand at 474.467 kb on - strand at 474.467 kb on - strand at 474.467 kb on - strand at 474.503 kb on - strand at 474.516 kb on + strand at 474.521 kb on + strand at 474.546 kb on + strand at 474.548 kb on + strand at 474.548 kb on + strand at 474.548 kb on + strand at 474.548 kb on + strand at 474.548 kb on + strand at 474.548 kb on + strand at 474.549 kb on - strand at 474.549 kb on - strand at 474.549 kb on - strand at 474.549 kb on - strand at 474.571 kb on - strand at 474.571 kb on - strand at 474.607 kb on + strand at 474.608 kb on - strand at 474.610 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) 10 mM remove 472,469 + +1.4 472,470 - +0.1 472,470 - -0.8 472,577 + +0.2 472,577 + -0.4 472,577 + +0.4 472,577 + +1.2 472,578 - +0.1 472,578 - -0.0 472,596 - -0.0 472,637 + +0.4 472,770 - -1.0 472,821 + +0.8 472,846 + +1.1 472,847 - +1.1 472,847 - -0.5 472,900 - -1.3 472,903 - +0.6 472,903 - +1.3 472,903 - -0.3 472,910 - +1.0 472,910 - -0.6 472,910 - -2.7 472,910 - -1.9 473,945 - PFR28_00430 0.77 +0.6 474,301 + +0.3 474,301 + +0.3 474,302 - -0.1 474,302 - +1.3 474,302 - -0.1 474,302 - +0.3 474,302 - -1.5 474,302 - +0.6 474,351 - -0.2 474,373 + -0.1 474,374 - +1.5 474,374 - +0.1 474,439 + -0.9 474,449 + +0.3 474,449 + +4.1 474,449 + +1.8 474,449 + +0.8 474,449 + -2.2 474,449 + -0.1 474,449 + -1.7 474,450 - -1.4 474,450 - +0.7 474,450 - +0.6 474,450 - +0.7 474,450 - -1.9 474,466 + -2.6 474,466 + +0.5 474,467 - -0.0 474,467 - -1.4 474,467 - +3.1 474,467 - -1.7 474,467 - -1.0 474,467 - +0.3 474,467 - -2.8 474,467 - -1.6 474,503 - -1.0 474,516 + -0.3 474,521 + -1.9 474,546 + -1.2 474,548 + +1.0 474,548 + +0.4 474,548 + -1.5 474,548 + +0.7 474,548 + +0.8 474,548 + -1.5 474,549 - +0.5 474,549 - -0.2 474,549 - +0.7 474,549 - -0.8 474,571 - +0.5 474,571 - +1.1 474,607 + +1.2 474,608 - +0.2 474,610 - -1.3
Or see this region's nucleotide sequence