Experiment: L-Lactate (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00382 and PFR28_00383 are separated by 239 nucleotides PFR28_00383 and PFR28_00384 are separated by 147 nucleotides PFR28_00384 and PFR28_00385 are separated by 80 nucleotides
PFR28_00382: PFR28_00382 - Glycerol-3-phosphate acyltransferase, at 417,353 to 419,854
_00382
PFR28_00383: PFR28_00383 - Major cold shock protein CspA, at 420,094 to 420,303
_00383
PFR28_00384: PFR28_00384 - hypothetical protein, at 420,451 to 420,828
_00384
PFR28_00385: PFR28_00385 - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 420,909 to 421,718
_00385
Position (kb) 420
421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 419.123 kb on + strand, within PFR28_00382 at 419.123 kb on + strand, within PFR28_00382 at 419.124 kb on - strand, within PFR28_00382 at 419.279 kb on + strand, within PFR28_00382 at 419.279 kb on + strand, within PFR28_00382 at 419.279 kb on + strand, within PFR28_00382 at 419.280 kb on - strand, within PFR28_00382 at 419.280 kb on - strand, within PFR28_00382 at 419.280 kb on - strand, within PFR28_00382 at 419.645 kb on + strand at 419.646 kb on - strand at 419.724 kb on + strand at 419.724 kb on + strand at 419.724 kb on + strand at 419.724 kb on + strand at 419.724 kb on + strand at 419.725 kb on - strand at 419.725 kb on - strand at 419.725 kb on - strand at 419.725 kb on - strand at 419.725 kb on - strand at 419.725 kb on - strand at 419.725 kb on - strand at 419.725 kb on - strand at 419.725 kb on - strand at 419.725 kb on - strand at 419.799 kb on + strand at 419.799 kb on + strand at 419.799 kb on + strand at 419.800 kb on - strand at 419.800 kb on - strand at 419.825 kb on + strand at 419.826 kb on - strand at 419.826 kb on - strand at 419.826 kb on - strand at 419.826 kb on - strand at 419.826 kb on - strand at 419.826 kb on - strand at 419.826 kb on - strand at 419.854 kb on + strand at 419.854 kb on + strand at 419.855 kb on - strand at 419.855 kb on - strand at 419.892 kb on + strand at 419.893 kb on - strand at 419.893 kb on - strand at 419.966 kb on + strand at 419.966 kb on + strand at 419.966 kb on + strand at 419.966 kb on + strand at 419.966 kb on + strand at 419.966 kb on + strand at 419.967 kb on - strand at 419.967 kb on - strand at 419.967 kb on - strand at 419.967 kb on - strand at 419.967 kb on - strand at 419.968 kb on + strand at 419.968 kb on + strand at 419.968 kb on + strand at 419.969 kb on - strand at 420.028 kb on - strand at 420.035 kb on + strand at 420.035 kb on + strand at 420.036 kb on - strand at 420.036 kb on - strand at 420.073 kb on - strand at 420.073 kb on - strand at 420.145 kb on + strand, within PFR28_00383 at 420.153 kb on + strand, within PFR28_00383 at 420.154 kb on - strand, within PFR28_00383 at 420.179 kb on + strand, within PFR28_00383 at 420.179 kb on + strand, within PFR28_00383 at 420.179 kb on + strand, within PFR28_00383 at 420.179 kb on + strand, within PFR28_00383 at 420.180 kb on - strand, within PFR28_00383 at 420.180 kb on - strand, within PFR28_00383 at 420.180 kb on - strand, within PFR28_00383 at 420.180 kb on - strand, within PFR28_00383 at 420.190 kb on + strand, within PFR28_00383 at 420.247 kb on + strand, within PFR28_00383 at 420.301 kb on + strand at 420.301 kb on + strand at 420.302 kb on - strand at 420.377 kb on + strand at 420.377 kb on + strand at 420.378 kb on - strand at 420.378 kb on - strand at 420.392 kb on - strand at 420.392 kb on - strand at 420.392 kb on - strand at 420.559 kb on + strand, within PFR28_00384 at 420.559 kb on + strand, within PFR28_00384 at 420.559 kb on + strand, within PFR28_00384 at 420.559 kb on + strand, within PFR28_00384 at 420.560 kb on - strand, within PFR28_00384 at 420.560 kb on - strand, within PFR28_00384 at 420.560 kb on - strand, within PFR28_00384 at 420.560 kb on - strand, within PFR28_00384 at 420.639 kb on - strand, within PFR28_00384 at 420.707 kb on + strand, within PFR28_00384 at 420.708 kb on - strand, within PFR28_00384 at 420.708 kb on - strand, within PFR28_00384 at 420.871 kb on - strand at 420.871 kb on - strand at 420.925 kb on + strand at 420.925 kb on + strand at 421.156 kb on + strand, within PFR28_00385 at 421.156 kb on + strand, within PFR28_00385 at 421.157 kb on - strand, within PFR28_00385 at 421.157 kb on - strand, within PFR28_00385 at 421.206 kb on + strand, within PFR28_00385 at 421.207 kb on - strand, within PFR28_00385
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) 10 mM remove 419,123 + PFR28_00382 0.71 -0.3 419,123 + PFR28_00382 0.71 +1.7 419,124 - PFR28_00382 0.71 +1.6 419,279 + PFR28_00382 0.77 -2.0 419,279 + PFR28_00382 0.77 -2.5 419,279 + PFR28_00382 0.77 -0.4 419,280 - PFR28_00382 0.77 -0.3 419,280 - PFR28_00382 0.77 -0.7 419,280 - PFR28_00382 0.77 -0.5 419,645 + +0.1 419,646 - +2.1 419,724 + +1.6 419,724 + +0.4 419,724 + +0.4 419,724 + +1.0 419,724 + -3.3 419,725 - +0.3 419,725 - -0.9 419,725 - +0.1 419,725 - +0.0 419,725 - -1.2 419,725 - -0.0 419,725 - +0.9 419,725 - -0.2 419,725 - -0.8 419,725 - -0.3 419,799 + +0.7 419,799 + +0.8 419,799 + +0.6 419,800 - +1.5 419,800 - +0.5 419,825 + +0.6 419,826 - -1.2 419,826 - -2.7 419,826 - +0.4 419,826 - -1.6 419,826 - +1.3 419,826 - -3.0 419,826 - +3.7 419,854 + -0.4 419,854 + -0.9 419,855 - -1.3 419,855 - -1.3 419,892 + +2.1 419,893 - -2.1 419,893 - +1.1 419,966 + -0.1 419,966 + -1.4 419,966 + -1.6 419,966 + -0.3 419,966 + +1.2 419,966 + +0.3 419,967 - +0.7 419,967 - +0.8 419,967 - -0.7 419,967 - +1.7 419,967 - -1.0 419,968 + +0.5 419,968 + -3.4 419,968 + -0.1 419,969 - +1.7 420,028 - +2.1 420,035 + +0.7 420,035 + -0.1 420,036 - +0.6 420,036 - +1.8 420,073 - +2.1 420,073 - -1.1 420,145 + PFR28_00383 0.24 -0.6 420,153 + PFR28_00383 0.28 -0.0 420,154 - PFR28_00383 0.29 +1.9 420,179 + PFR28_00383 0.40 +0.3 420,179 + PFR28_00383 0.40 -1.3 420,179 + PFR28_00383 0.40 -0.1 420,179 + PFR28_00383 0.40 -0.4 420,180 - PFR28_00383 0.41 +0.8 420,180 - PFR28_00383 0.41 -1.5 420,180 - PFR28_00383 0.41 -2.3 420,180 - PFR28_00383 0.41 +0.6 420,190 + PFR28_00383 0.46 -1.1 420,247 + PFR28_00383 0.73 +0.3 420,301 + -0.0 420,301 + -0.8 420,302 - +0.3 420,377 + -0.6 420,377 + -0.2 420,378 - -0.4 420,378 - +1.1 420,392 - +1.1 420,392 - -3.0 420,392 - +0.8 420,559 + PFR28_00384 0.29 -1.5 420,559 + PFR28_00384 0.29 -0.2 420,559 + PFR28_00384 0.29 -3.3 420,559 + PFR28_00384 0.29 +0.1 420,560 - PFR28_00384 0.29 +0.2 420,560 - PFR28_00384 0.29 +1.5 420,560 - PFR28_00384 0.29 -0.2 420,560 - PFR28_00384 0.29 +1.6 420,639 - PFR28_00384 0.50 +2.0 420,707 + PFR28_00384 0.68 +0.3 420,708 - PFR28_00384 0.68 -1.1 420,708 - PFR28_00384 0.68 -0.4 420,871 - +1.1 420,871 - -1.8 420,925 + -1.1 420,925 + -0.0 421,156 + PFR28_00385 0.30 +1.0 421,156 + PFR28_00385 0.30 -0.9 421,157 - PFR28_00385 0.31 +0.6 421,157 - PFR28_00385 0.31 +3.4 421,206 + PFR28_00385 0.37 -1.5 421,207 - PFR28_00385 0.37 -0.4
Or see this region's nucleotide sequence