Experiment: m.b. Tetracycline 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0839 and Echvi_0840 are separated by 72 nucleotides Echvi_0840 and Echvi_0841 are separated by 513 nucleotides Echvi_0841 and Echvi_0842 are separated by 281 nucleotides
Echvi_0839: Echvi_0839 - Predicted membrane protein, at 959,113 to 959,811
_0839
Echvi_0840: Echvi_0840 - hypothetical protein, at 959,884 to 960,039
_0840
Echvi_0841: Echvi_0841 - aspartyl-tRNA synthetase, bacterial type, at 960,553 to 962,307
_0841
Echvi_0842: Echvi_0842 - Membrane proteins related to metalloendopeptidases, at 962,589 to 963,887
_0842
Position (kb) 960
961
962
963 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 959.560 kb on + strand, within Echvi_0839 at 959.620 kb on - strand, within Echvi_0839 at 959.620 kb on - strand, within Echvi_0839 at 959.631 kb on + strand, within Echvi_0839 at 959.631 kb on + strand, within Echvi_0839 at 959.632 kb on - strand, within Echvi_0839 at 959.632 kb on - strand, within Echvi_0839 at 959.633 kb on + strand, within Echvi_0839 at 959.639 kb on + strand, within Echvi_0839 at 959.639 kb on + strand, within Echvi_0839 at 959.639 kb on + strand, within Echvi_0839 at 959.639 kb on + strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.643 kb on + strand, within Echvi_0839 at 959.646 kb on - strand, within Echvi_0839 at 959.646 kb on - strand, within Echvi_0839 at 959.676 kb on + strand, within Echvi_0839 at 959.676 kb on + strand, within Echvi_0839 at 959.677 kb on - strand, within Echvi_0839 at 959.708 kb on + strand, within Echvi_0839 at 959.708 kb on + strand, within Echvi_0839 at 959.823 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.849 kb on - strand at 959.849 kb on - strand at 959.861 kb on + strand at 959.861 kb on + strand at 959.927 kb on + strand, within Echvi_0840 at 959.928 kb on - strand, within Echvi_0840 at 959.928 kb on - strand, within Echvi_0840 at 959.938 kb on - strand, within Echvi_0840 at 959.938 kb on - strand, within Echvi_0840 at 959.962 kb on - strand, within Echvi_0840 at 960.011 kb on + strand, within Echvi_0840 at 960.011 kb on + strand, within Echvi_0840 at 960.011 kb on + strand, within Echvi_0840 at 960.011 kb on + strand, within Echvi_0840 at 960.013 kb on + strand, within Echvi_0840 at 960.100 kb on - strand at 960.111 kb on + strand at 960.180 kb on - strand at 960.195 kb on + strand at 960.195 kb on + strand at 960.232 kb on + strand at 960.232 kb on + strand at 960.233 kb on - strand at 960.242 kb on - strand at 960.276 kb on + strand at 960.277 kb on - strand at 960.277 kb on - strand at 960.303 kb on + strand at 960.304 kb on - strand at 960.309 kb on + strand at 960.318 kb on - strand at 960.378 kb on + strand at 960.379 kb on - strand at 960.423 kb on + strand at 960.424 kb on - strand at 962.345 kb on - strand at 962.365 kb on - strand at 962.367 kb on + strand at 962.368 kb on - strand at 962.368 kb on - strand at 962.371 kb on - strand at 962.371 kb on - strand at 962.371 kb on - strand at 962.402 kb on + strand at 962.403 kb on - strand at 962.403 kb on - strand at 962.424 kb on + strand at 962.510 kb on + strand at 962.515 kb on + strand at 962.516 kb on - strand at 962.519 kb on + strand at 962.519 kb on + strand at 962.519 kb on + strand at 962.520 kb on - strand at 962.520 kb on - strand at 962.520 kb on - strand at 962.520 kb on - strand at 962.527 kb on - strand at 962.550 kb on + strand at 962.550 kb on + strand at 962.618 kb on + strand at 962.618 kb on + strand at 962.619 kb on - strand at 962.653 kb on - strand at 962.665 kb on + strand at 962.665 kb on + strand at 962.687 kb on - strand at 962.698 kb on + strand at 962.746 kb on + strand, within Echvi_0842 at 962.764 kb on + strand, within Echvi_0842 at 962.765 kb on - strand, within Echvi_0842 at 962.782 kb on + strand, within Echvi_0842 at 962.783 kb on - strand, within Echvi_0842 at 962.783 kb on - strand, within Echvi_0842 at 962.795 kb on - strand, within Echvi_0842 at 962.839 kb on + strand, within Echvi_0842 at 962.839 kb on + strand, within Echvi_0842 at 962.840 kb on - strand, within Echvi_0842 at 962.840 kb on - strand, within Echvi_0842 at 962.897 kb on + strand, within Echvi_0842 at 962.897 kb on + strand, within Echvi_0842 at 962.898 kb on - strand, within Echvi_0842 at 962.926 kb on + strand, within Echvi_0842 at 962.927 kb on - strand, within Echvi_0842 at 963.000 kb on + strand, within Echvi_0842 at 963.001 kb on - strand, within Echvi_0842 at 963.024 kb on + strand, within Echvi_0842 at 963.024 kb on + strand, within Echvi_0842 at 963.025 kb on - strand, within Echvi_0842 at 963.027 kb on - strand, within Echvi_0842 at 963.088 kb on + strand, within Echvi_0842 at 963.088 kb on + strand, within Echvi_0842 at 963.090 kb on + strand, within Echvi_0842 at 963.091 kb on - strand, within Echvi_0842 at 963.091 kb on - strand, within Echvi_0842 at 963.091 kb on - strand, within Echvi_0842 at 963.091 kb on - strand, within Echvi_0842 at 963.151 kb on - strand, within Echvi_0842 at 963.259 kb on + strand, within Echvi_0842 at 963.259 kb on + strand, within Echvi_0842 at 963.264 kb on + strand, within Echvi_0842 at 963.289 kb on - strand, within Echvi_0842 at 963.291 kb on + strand, within Echvi_0842
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.12 mg/ml remove 959,560 + Echvi_0839 0.64 -2.3 959,620 - Echvi_0839 0.73 -0.0 959,620 - Echvi_0839 0.73 -2.7 959,631 + Echvi_0839 0.74 -0.6 959,631 + Echvi_0839 0.74 -0.4 959,632 - Echvi_0839 0.74 -0.0 959,632 - Echvi_0839 0.74 +0.5 959,633 + Echvi_0839 0.74 -0.3 959,639 + Echvi_0839 0.75 -3.0 959,639 + Echvi_0839 0.75 +0.5 959,639 + Echvi_0839 0.75 +1.7 959,639 + Echvi_0839 0.75 -0.2 959,640 - Echvi_0839 0.75 -0.1 959,640 - Echvi_0839 0.75 +1.7 959,640 - Echvi_0839 0.75 -0.3 959,640 - Echvi_0839 0.75 -0.9 959,640 - Echvi_0839 0.75 -0.3 959,640 - Echvi_0839 0.75 +0.6 959,643 + Echvi_0839 0.76 -0.5 959,646 - Echvi_0839 0.76 -0.4 959,646 - Echvi_0839 0.76 -1.0 959,676 + Echvi_0839 0.81 +0.1 959,676 + Echvi_0839 0.81 +0.3 959,677 - Echvi_0839 0.81 +0.5 959,708 + Echvi_0839 0.85 -0.3 959,708 + Echvi_0839 0.85 -0.1 959,823 + -0.7 959,848 + -0.3 959,848 + +0.4 959,848 + +1.3 959,848 + -0.2 959,848 + -1.2 959,848 + +0.3 959,849 - +0.0 959,849 - -0.4 959,861 + -1.2 959,861 + +0.6 959,927 + Echvi_0840 0.28 +0.2 959,928 - Echvi_0840 0.28 -0.5 959,928 - Echvi_0840 0.28 +1.2 959,938 - Echvi_0840 0.35 -1.0 959,938 - Echvi_0840 0.35 -0.6 959,962 - Echvi_0840 0.50 -0.5 960,011 + Echvi_0840 0.81 -0.3 960,011 + Echvi_0840 0.81 -0.1 960,011 + Echvi_0840 0.81 +0.0 960,011 + Echvi_0840 0.81 -0.3 960,013 + Echvi_0840 0.83 -0.2 960,100 - +0.8 960,111 + +0.3 960,180 - -1.1 960,195 + -0.2 960,195 + +1.2 960,232 + -0.5 960,232 + +0.6 960,233 - -1.4 960,242 - -0.1 960,276 + +1.3 960,277 - -0.5 960,277 - -2.1 960,303 + +1.3 960,304 - -1.6 960,309 + -0.5 960,318 - -0.1 960,378 + -0.0 960,379 - -0.9 960,423 + -0.0 960,424 - +0.9 962,345 - -0.0 962,365 - -0.2 962,367 + -0.7 962,368 - -0.7 962,368 - +0.0 962,371 - +0.9 962,371 - -1.8 962,371 - -0.5 962,402 + -0.4 962,403 - +0.0 962,403 - +1.3 962,424 + -0.5 962,510 + +0.1 962,515 + +1.1 962,516 - +1.1 962,519 + -1.2 962,519 + -1.0 962,519 + +0.4 962,520 - +0.4 962,520 - +2.5 962,520 - +0.3 962,520 - +0.2 962,527 - -0.1 962,550 + -0.7 962,550 + -0.5 962,618 + +0.6 962,618 + +0.3 962,619 - -0.9 962,653 - +0.9 962,665 + +0.5 962,665 + +0.6 962,687 - +0.2 962,698 + +0.7 962,746 + Echvi_0842 0.12 +0.4 962,764 + Echvi_0842 0.13 -0.7 962,765 - Echvi_0842 0.14 +1.1 962,782 + Echvi_0842 0.15 +1.2 962,783 - Echvi_0842 0.15 -0.3 962,783 - Echvi_0842 0.15 +0.4 962,795 - Echvi_0842 0.16 +0.7 962,839 + Echvi_0842 0.19 -1.6 962,839 + Echvi_0842 0.19 +0.1 962,840 - Echvi_0842 0.19 -1.0 962,840 - Echvi_0842 0.19 +0.7 962,897 + Echvi_0842 0.24 +0.5 962,897 + Echvi_0842 0.24 +1.0 962,898 - Echvi_0842 0.24 +1.4 962,926 + Echvi_0842 0.26 +0.0 962,927 - Echvi_0842 0.26 +0.5 963,000 + Echvi_0842 0.32 +0.7 963,001 - Echvi_0842 0.32 +0.6 963,024 + Echvi_0842 0.33 +0.5 963,024 + Echvi_0842 0.33 +0.1 963,025 - Echvi_0842 0.34 +0.9 963,027 - Echvi_0842 0.34 +0.3 963,088 + Echvi_0842 0.38 -0.5 963,088 + Echvi_0842 0.38 +1.1 963,090 + Echvi_0842 0.39 +0.4 963,091 - Echvi_0842 0.39 +0.5 963,091 - Echvi_0842 0.39 +1.1 963,091 - Echvi_0842 0.39 +0.9 963,091 - Echvi_0842 0.39 +0.5 963,151 - Echvi_0842 0.43 +0.2 963,259 + Echvi_0842 0.52 +0.4 963,259 + Echvi_0842 0.52 -1.7 963,264 + Echvi_0842 0.52 +0.8 963,289 - Echvi_0842 0.54 +0.5 963,291 + Echvi_0842 0.54 -0.6
Or see this region's nucleotide sequence