Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0596

Experiment: m.b. Tetracycline 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0595 and Echvi_0596 are separated by 172 nucleotidesEchvi_0596 and Echvi_0597 are separated by 69 nucleotidesEchvi_0597 and Echvi_0598 are separated by 6 nucleotides Echvi_0595: Echvi_0595 - Cellulase M and related proteins, at 672,226 to 673,143 _0595 Echvi_0596: Echvi_0596 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 673,316 to 674,587 _0596 Echvi_0597: Echvi_0597 - Uracil phosphoribosyltransferase, at 674,657 to 675,304 _0597 Echvi_0598: Echvi_0598 - K+-dependent Na+/Ca+ exchanger related-protein, at 675,311 to 676,240 _0598 Position (kb) 673 674 675Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 672.331 kb on - strand, within Echvi_0595at 672.350 kb on + strand, within Echvi_0595at 672.350 kb on + strand, within Echvi_0595at 672.351 kb on - strand, within Echvi_0595at 672.397 kb on + strand, within Echvi_0595at 672.398 kb on - strand, within Echvi_0595at 672.471 kb on + strand, within Echvi_0595at 672.534 kb on + strand, within Echvi_0595at 672.534 kb on + strand, within Echvi_0595at 672.535 kb on - strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.581 kb on + strand, within Echvi_0595at 672.582 kb on - strand, within Echvi_0595at 672.582 kb on - strand, within Echvi_0595at 672.582 kb on - strand, within Echvi_0595at 672.582 kb on - strand, within Echvi_0595at 672.582 kb on - strand, within Echvi_0595at 672.582 kb on - strand, within Echvi_0595at 672.582 kb on - strand, within Echvi_0595at 672.582 kb on - strand, within Echvi_0595at 672.627 kb on + strand, within Echvi_0595at 672.627 kb on + strand, within Echvi_0595at 672.678 kb on + strand, within Echvi_0595at 672.678 kb on + strand, within Echvi_0595at 672.679 kb on - strand, within Echvi_0595at 672.680 kb on + strand, within Echvi_0595at 672.680 kb on + strand, within Echvi_0595at 672.680 kb on + strand, within Echvi_0595at 672.681 kb on - strand, within Echvi_0595at 672.681 kb on - strand, within Echvi_0595at 672.700 kb on + strand, within Echvi_0595at 672.701 kb on - strand, within Echvi_0595at 672.701 kb on - strand, within Echvi_0595at 672.701 kb on - strand, within Echvi_0595at 672.750 kb on - strand, within Echvi_0595at 672.750 kb on - strand, within Echvi_0595at 672.818 kb on - strand, within Echvi_0595at 672.818 kb on - strand, within Echvi_0595at 672.822 kb on + strand, within Echvi_0595at 672.822 kb on + strand, within Echvi_0595at 672.823 kb on - strand, within Echvi_0595at 672.830 kb on - strand, within Echvi_0595at 672.981 kb on + strand, within Echvi_0595at 672.982 kb on - strand, within Echvi_0595at 672.987 kb on + strand, within Echvi_0595at 672.988 kb on - strand, within Echvi_0595at 673.055 kb on + strandat 673.158 kb on + strandat 673.424 kb on - strandat 673.455 kb on - strand, within Echvi_0596at 673.455 kb on - strand, within Echvi_0596at 673.589 kb on + strand, within Echvi_0596at 673.623 kb on + strand, within Echvi_0596at 673.669 kb on - strand, within Echvi_0596at 673.669 kb on - strand, within Echvi_0596at 673.702 kb on - strand, within Echvi_0596at 673.733 kb on - strand, within Echvi_0596at 673.745 kb on + strand, within Echvi_0596at 673.778 kb on - strand, within Echvi_0596at 673.890 kb on - strand, within Echvi_0596at 673.971 kb on - strand, within Echvi_0596at 673.974 kb on + strand, within Echvi_0596at 674.279 kb on + strand, within Echvi_0596at 674.307 kb on + strand, within Echvi_0596at 674.334 kb on - strand, within Echvi_0596at 674.338 kb on - strand, within Echvi_0596at 674.338 kb on - strand, within Echvi_0596at 674.414 kb on + strand, within Echvi_0596at 674.414 kb on + strand, within Echvi_0596at 674.415 kb on - strand, within Echvi_0596at 674.415 kb on - strand, within Echvi_0596at 674.467 kb on - strandat 674.596 kb on + strandat 674.604 kb on + strandat 674.643 kb on + strandat 674.656 kb on + strandat 674.656 kb on + strandat 674.656 kb on + strandat 674.656 kb on + strandat 674.657 kb on - strandat 674.665 kb on - strandat 674.665 kb on - strandat 674.696 kb on + strandat 674.755 kb on + strand, within Echvi_0597at 674.766 kb on + strand, within Echvi_0597at 674.784 kb on - strand, within Echvi_0597at 674.807 kb on + strand, within Echvi_0597at 674.807 kb on + strand, within Echvi_0597at 674.807 kb on + strand, within Echvi_0597at 674.808 kb on - strand, within Echvi_0597at 674.839 kb on + strand, within Echvi_0597at 674.839 kb on + strand, within Echvi_0597at 674.840 kb on - strand, within Echvi_0597at 674.860 kb on + strand, within Echvi_0597at 674.860 kb on + strand, within Echvi_0597at 674.861 kb on - strand, within Echvi_0597at 674.922 kb on + strand, within Echvi_0597at 674.923 kb on - strand, within Echvi_0597at 674.928 kb on - strand, within Echvi_0597at 674.954 kb on - strand, within Echvi_0597at 674.956 kb on - strand, within Echvi_0597at 675.012 kb on - strand, within Echvi_0597at 675.054 kb on + strand, within Echvi_0597at 675.054 kb on + strand, within Echvi_0597at 675.055 kb on - strand, within Echvi_0597at 675.173 kb on + strand, within Echvi_0597at 675.178 kb on + strand, within Echvi_0597at 675.178 kb on + strand, within Echvi_0597at 675.179 kb on - strand, within Echvi_0597at 675.179 kb on - strand, within Echvi_0597at 675.179 kb on - strand, within Echvi_0597at 675.207 kb on + strand, within Echvi_0597at 675.207 kb on + strand, within Echvi_0597at 675.208 kb on - strand, within Echvi_0597at 675.208 kb on - strand, within Echvi_0597at 675.248 kb on + strandat 675.248 kb on + strandat 675.317 kb on + strandat 675.318 kb on - strandat 675.318 kb on - strandat 675.325 kb on - strandat 675.325 kb on - strandat 675.343 kb on + strandat 675.435 kb on + strand, within Echvi_0598at 675.438 kb on + strand, within Echvi_0598at 675.438 kb on + strand, within Echvi_0598at 675.438 kb on + strand, within Echvi_0598at 675.439 kb on - strand, within Echvi_0598at 675.506 kb on - strand, within Echvi_0598at 675.525 kb on + strand, within Echvi_0598at 675.526 kb on - strand, within Echvi_0598at 675.533 kb on - strand, within Echvi_0598at 675.544 kb on + strand, within Echvi_0598at 675.544 kb on + strand, within Echvi_0598at 675.544 kb on + strand, within Echvi_0598at 675.547 kb on - strand, within Echvi_0598at 675.547 kb on - strand, within Echvi_0598at 675.547 kb on - strand, within Echvi_0598at 675.547 kb on - strand, within Echvi_0598at 675.579 kb on - strand, within Echvi_0598

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.12 mg/ml
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672,331 - Echvi_0595 0.11 -1.1
672,350 + Echvi_0595 0.14 +0.0
672,350 + Echvi_0595 0.14 -1.3
672,351 - Echvi_0595 0.14 +0.1
672,397 + Echvi_0595 0.19 +0.1
672,398 - Echvi_0595 0.19 +0.9
672,471 + Echvi_0595 0.27 +0.7
672,534 + Echvi_0595 0.34 +0.0
672,534 + Echvi_0595 0.34 -0.5
672,535 - Echvi_0595 0.34 -0.4
672,581 + Echvi_0595 0.39 -0.4
672,581 + Echvi_0595 0.39 +0.2
672,581 + Echvi_0595 0.39 -0.7
672,581 + Echvi_0595 0.39 +0.0
672,581 + Echvi_0595 0.39 -0.9
672,581 + Echvi_0595 0.39 -0.3
672,581 + Echvi_0595 0.39 -0.3
672,581 + Echvi_0595 0.39 -0.3
672,581 + Echvi_0595 0.39 +0.4
672,581 + Echvi_0595 0.39 +1.4
672,581 + Echvi_0595 0.39 -0.3
672,582 - Echvi_0595 0.39 -0.2
672,582 - Echvi_0595 0.39 -0.6
672,582 - Echvi_0595 0.39 -0.3
672,582 - Echvi_0595 0.39 -0.6
672,582 - Echvi_0595 0.39 -0.5
672,582 - Echvi_0595 0.39 -2.0
672,582 - Echvi_0595 0.39 -1.6
672,582 - Echvi_0595 0.39 +0.2
672,627 + Echvi_0595 0.44 -0.5
672,627 + Echvi_0595 0.44 -0.1
672,678 + Echvi_0595 0.49 -1.2
672,678 + Echvi_0595 0.49 -1.1
672,679 - Echvi_0595 0.49 -1.6
672,680 + Echvi_0595 0.49 +0.3
672,680 + Echvi_0595 0.49 +1.1
672,680 + Echvi_0595 0.49 -0.7
672,681 - Echvi_0595 0.50 -1.4
672,681 - Echvi_0595 0.50 -0.2
672,700 + Echvi_0595 0.52 -0.5
672,701 - Echvi_0595 0.52 +0.3
672,701 - Echvi_0595 0.52 -0.6
672,701 - Echvi_0595 0.52 +0.1
672,750 - Echvi_0595 0.57 -2.3
672,750 - Echvi_0595 0.57 -0.7
672,818 - Echvi_0595 0.64 -0.9
672,818 - Echvi_0595 0.64 -0.6
672,822 + Echvi_0595 0.65 +1.2
672,822 + Echvi_0595 0.65 -0.1
672,823 - Echvi_0595 0.65 +1.0
672,830 - Echvi_0595 0.66 -0.9
672,981 + Echvi_0595 0.82 -1.1
672,982 - Echvi_0595 0.82 +0.8
672,987 + Echvi_0595 0.83 -1.3
672,988 - Echvi_0595 0.83 +0.6
673,055 + -0.3
673,158 + +0.1
673,424 - -1.1
673,455 - Echvi_0596 0.11 -0.7
673,455 - Echvi_0596 0.11 -2.7
673,589 + Echvi_0596 0.21 -3.5
673,623 + Echvi_0596 0.24 -2.6
673,669 - Echvi_0596 0.28 +0.1
673,669 - Echvi_0596 0.28 -3.5
673,702 - Echvi_0596 0.30 -1.8
673,733 - Echvi_0596 0.33 +0.9
673,745 + Echvi_0596 0.34 -2.2
673,778 - Echvi_0596 0.36 -1.7
673,890 - Echvi_0596 0.45 -2.1
673,971 - Echvi_0596 0.51 -0.3
673,974 + Echvi_0596 0.52 -2.1
674,279 + Echvi_0596 0.76 -2.0
674,307 + Echvi_0596 0.78 -1.1
674,334 - Echvi_0596 0.80 -1.3
674,338 - Echvi_0596 0.80 -2.7
674,338 - Echvi_0596 0.80 -2.9
674,414 + Echvi_0596 0.86 -0.7
674,414 + Echvi_0596 0.86 -0.9
674,415 - Echvi_0596 0.86 +0.7
674,415 - Echvi_0596 0.86 -2.4
674,467 - -2.7
674,596 + -2.0
674,604 + -2.0
674,643 + +1.0
674,656 + +1.7
674,656 + -0.0
674,656 + -0.6
674,656 + +0.3
674,657 - -1.2
674,665 - -0.7
674,665 - -1.9
674,696 + +0.2
674,755 + Echvi_0597 0.15 -0.4
674,766 + Echvi_0597 0.17 +0.2
674,784 - Echvi_0597 0.20 -0.7
674,807 + Echvi_0597 0.23 -0.0
674,807 + Echvi_0597 0.23 +2.7
674,807 + Echvi_0597 0.23 +0.4
674,808 - Echvi_0597 0.23 -1.7
674,839 + Echvi_0597 0.28 +0.3
674,839 + Echvi_0597 0.28 +0.0
674,840 - Echvi_0597 0.28 +0.5
674,860 + Echvi_0597 0.31 -1.7
674,860 + Echvi_0597 0.31 -0.2
674,861 - Echvi_0597 0.31 -1.5
674,922 + Echvi_0597 0.41 -0.1
674,923 - Echvi_0597 0.41 -1.5
674,928 - Echvi_0597 0.42 -0.3
674,954 - Echvi_0597 0.46 -0.6
674,956 - Echvi_0597 0.46 +0.3
675,012 - Echvi_0597 0.55 -0.1
675,054 + Echvi_0597 0.61 -0.2
675,054 + Echvi_0597 0.61 -0.2
675,055 - Echvi_0597 0.61 -1.3
675,173 + Echvi_0597 0.80 -0.8
675,178 + Echvi_0597 0.80 +0.1
675,178 + Echvi_0597 0.80 -0.9
675,179 - Echvi_0597 0.81 -1.6
675,179 - Echvi_0597 0.81 +0.3
675,179 - Echvi_0597 0.81 +0.3
675,207 + Echvi_0597 0.85 -0.3
675,207 + Echvi_0597 0.85 +0.0
675,208 - Echvi_0597 0.85 -0.5
675,208 - Echvi_0597 0.85 +0.4
675,248 + +1.2
675,248 + +0.2
675,317 + +0.7
675,318 - -0.5
675,318 - -0.6
675,325 - -0.7
675,325 - -0.2
675,343 + -1.1
675,435 + Echvi_0598 0.13 -0.1
675,438 + Echvi_0598 0.14 +2.5
675,438 + Echvi_0598 0.14 +0.2
675,438 + Echvi_0598 0.14 -0.7
675,439 - Echvi_0598 0.14 -0.0
675,506 - Echvi_0598 0.21 -0.1
675,525 + Echvi_0598 0.23 +0.4
675,526 - Echvi_0598 0.23 +1.0
675,533 - Echvi_0598 0.24 -0.9
675,544 + Echvi_0598 0.25 -0.4
675,544 + Echvi_0598 0.25 -0.1
675,544 + Echvi_0598 0.25 +0.0
675,547 - Echvi_0598 0.25 +0.3
675,547 - Echvi_0598 0.25 -0.1
675,547 - Echvi_0598 0.25 -0.3
675,547 - Echvi_0598 0.25 -0.7
675,579 - Echvi_0598 0.29 +0.6

Or see this region's nucleotide sequence