Experiment: m.b. Tetracycline 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0178 and Echvi_0179 are separated by 465 nucleotides Echvi_0179 and Echvi_0180 are separated by 50 nucleotides Echvi_0180 and Echvi_0181 are separated by 154 nucleotides
Echvi_0178: Echvi_0178 - Bacteroidetes-specific putative membrane protein, at 195,851 to 196,819
_0178
Echvi_0179: Echvi_0179 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 197,285 to 197,680
_0179
Echvi_0180: Echvi_0180 - transcription elongation factor GreA, at 197,731 to 198,204
_0180
Echvi_0181: Echvi_0181 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 198,359 to 199,294
_0181
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 196.766 kb on + strand at 196.853 kb on + strand at 197.003 kb on + strand at 197.003 kb on + strand at 197.011 kb on + strand at 197.011 kb on + strand at 197.274 kb on - strand at 197.296 kb on + strand at 197.296 kb on + strand at 197.297 kb on - strand at 197.315 kb on + strand at 197.315 kb on + strand at 197.316 kb on - strand at 197.344 kb on + strand, within Echvi_0179 at 197.350 kb on + strand, within Echvi_0179 at 197.351 kb on - strand, within Echvi_0179 at 197.426 kb on + strand, within Echvi_0179 at 197.449 kb on + strand, within Echvi_0179 at 197.450 kb on - strand, within Echvi_0179 at 197.539 kb on - strand, within Echvi_0179 at 197.539 kb on - strand, within Echvi_0179 at 197.543 kb on + strand, within Echvi_0179 at 197.544 kb on - strand, within Echvi_0179 at 197.554 kb on + strand, within Echvi_0179 at 197.554 kb on + strand, within Echvi_0179 at 197.555 kb on - strand, within Echvi_0179 at 197.558 kb on + strand, within Echvi_0179 at 197.633 kb on - strand, within Echvi_0179 at 197.633 kb on - strand, within Echvi_0179 at 197.711 kb on - strand at 197.732 kb on + strand at 197.739 kb on + strand at 197.739 kb on + strand at 197.739 kb on + strand at 197.782 kb on + strand, within Echvi_0180 at 197.890 kb on - strand, within Echvi_0180 at 197.914 kb on - strand at 198.060 kb on - strand, within Echvi_0180 at 198.183 kb on + strand at 198.185 kb on + strand at 198.188 kb on + strand at 198.188 kb on + strand at 198.189 kb on - strand at 198.280 kb on + strand at 198.280 kb on + strand at 198.280 kb on + strand at 198.280 kb on + strand at 198.290 kb on - strand at 198.308 kb on + strand at 198.308 kb on + strand at 198.308 kb on + strand at 198.308 kb on + strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.310 kb on + strand at 198.310 kb on + strand at 198.310 kb on + strand at 198.311 kb on - strand at 198.330 kb on + strand at 199.065 kb on - strand, within Echvi_0181
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.12 mg/ml remove 196,766 + +0.0 196,853 + +0.6 197,003 + -0.2 197,003 + -0.9 197,011 + -0.4 197,011 + +0.2 197,274 - +1.3 197,296 + -0.8 197,296 + -0.2 197,297 - +0.2 197,315 + +1.0 197,315 + +0.0 197,316 - +0.2 197,344 + Echvi_0179 0.15 -2.8 197,350 + Echvi_0179 0.16 +0.2 197,351 - Echvi_0179 0.17 -0.2 197,426 + Echvi_0179 0.36 +1.0 197,449 + Echvi_0179 0.41 +0.6 197,450 - Echvi_0179 0.42 +0.6 197,539 - Echvi_0179 0.64 -0.8 197,539 - Echvi_0179 0.64 -0.1 197,543 + Echvi_0179 0.65 -1.2 197,544 - Echvi_0179 0.65 +1.3 197,554 + Echvi_0179 0.68 +0.5 197,554 + Echvi_0179 0.68 +0.3 197,555 - Echvi_0179 0.68 +0.2 197,558 + Echvi_0179 0.69 -0.4 197,633 - Echvi_0179 0.88 +0.3 197,633 - Echvi_0179 0.88 -0.4 197,711 - +1.4 197,732 + -0.6 197,739 + -2.0 197,739 + -2.4 197,739 + +0.4 197,782 + Echvi_0180 0.11 -0.5 197,890 - Echvi_0180 0.34 -0.4 197,914 - +0.6 198,060 - Echvi_0180 0.69 +1.6 198,183 + +1.2 198,185 + +1.4 198,188 + -2.2 198,188 + +0.7 198,189 - -0.4 198,280 + -0.1 198,280 + -1.0 198,280 + -0.7 198,280 + -0.6 198,290 - +0.0 198,308 + -0.1 198,308 + -0.1 198,308 + -1.8 198,308 + +0.4 198,309 - -1.0 198,309 - -0.8 198,309 - -1.4 198,309 - +1.9 198,309 - +0.0 198,310 + +0.3 198,310 + -1.4 198,310 + -0.5 198,311 - +1.2 198,330 + -1.5 199,065 - Echvi_0181 0.75 -2.2
Or see this region's nucleotide sequence