Strain Fitness in Agrobacterium fabrum C58 around Atu6018

Experiment: L-ascorbate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu6017 and Atu6018 are separated by 76 nucleotidesAtu6018 and Atu6019 are separated by 47 nucleotides Atu6017: Atu6017 - NAD/NADP octopine/nopaline dehydrogenase, at 26,092 to 27,174 Atu6017 Atu6018: Atu6018 - arginase, at 27,251 to 28,225 Atu6018 Atu6019: Atu6019 - D-nopaline dehydrogenase, at 28,273 to 29,691 Atu6019 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1 2 3at 26.254 kb on - strand, within Atu6017at 26.254 kb on - strand, within Atu6017at 26.254 kb on - strand, within Atu6017at 26.272 kb on - strand, within Atu6017at 26.280 kb on + strand, within Atu6017at 26.282 kb on + strand, within Atu6017at 26.282 kb on + strand, within Atu6017at 26.309 kb on - strand, within Atu6017at 26.314 kb on - strand, within Atu6017at 26.335 kb on + strand, within Atu6017at 26.455 kb on - strand, within Atu6017at 26.493 kb on + strand, within Atu6017at 26.495 kb on + strand, within Atu6017at 26.501 kb on - strand, within Atu6017at 26.530 kb on + strand, within Atu6017at 26.538 kb on - strand, within Atu6017at 26.575 kb on - strand, within Atu6017at 26.582 kb on + strand, within Atu6017at 26.585 kb on - strand, within Atu6017at 26.593 kb on + strand, within Atu6017at 26.619 kb on - strand, within Atu6017at 26.654 kb on + strand, within Atu6017at 26.709 kb on - strand, within Atu6017at 26.709 kb on - strand, within Atu6017at 26.717 kb on + strand, within Atu6017at 26.771 kb on + strand, within Atu6017at 26.779 kb on - strand, within Atu6017at 26.786 kb on + strand, within Atu6017at 26.786 kb on + strand, within Atu6017at 26.786 kb on + strand, within Atu6017at 26.786 kb on + strand, within Atu6017at 26.794 kb on - strand, within Atu6017at 26.794 kb on - strand, within Atu6017at 26.794 kb on - strand, within Atu6017at 26.794 kb on - strand, within Atu6017at 26.843 kb on + strand, within Atu6017at 26.868 kb on - strand, within Atu6017at 26.875 kb on + strand, within Atu6017at 26.917 kb on + strand, within Atu6017at 26.942 kb on - strand, within Atu6017at 26.942 kb on - strand, within Atu6017at 27.012 kb on + strand, within Atu6017at 27.012 kb on + strand, within Atu6017at 27.018 kb on - strand, within Atu6017at 27.020 kb on - strand, within Atu6017at 27.020 kb on - strand, within Atu6017at 27.025 kb on - strand, within Atu6017at 27.029 kb on + strand, within Atu6017at 27.030 kb on - strand, within Atu6017at 27.037 kb on - strand, within Atu6017at 27.099 kb on - strandat 27.107 kb on - strandat 27.132 kb on + strandat 27.142 kb on + strandat 27.167 kb on + strandat 27.205 kb on - strandat 27.215 kb on + strandat 27.243 kb on - strandat 27.243 kb on - strandat 27.261 kb on + strandat 27.269 kb on - strandat 27.301 kb on + strandat 27.312 kb on + strandat 27.387 kb on - strand, within Atu6018at 27.400 kb on - strand, within Atu6018at 27.450 kb on + strand, within Atu6018at 27.450 kb on + strand, within Atu6018at 27.460 kb on + strand, within Atu6018at 27.460 kb on + strand, within Atu6018at 27.468 kb on - strand, within Atu6018at 27.511 kb on + strand, within Atu6018at 27.521 kb on + strand, within Atu6018at 27.544 kb on - strand, within Atu6018at 27.551 kb on + strand, within Atu6018at 27.598 kb on + strand, within Atu6018at 27.608 kb on + strand, within Atu6018at 27.698 kb on + strand, within Atu6018at 27.703 kb on + strand, within Atu6018at 27.735 kb on + strand, within Atu6018at 27.754 kb on - strand, within Atu6018at 27.782 kb on + strand, within Atu6018at 27.785 kb on - strand, within Atu6018at 27.788 kb on - strand, within Atu6018at 27.788 kb on - strand, within Atu6018at 27.819 kb on - strand, within Atu6018at 27.825 kb on + strand, within Atu6018at 27.853 kb on + strand, within Atu6018at 27.856 kb on - strand, within Atu6018at 27.904 kb on + strand, within Atu6018at 27.907 kb on - strand, within Atu6018at 27.926 kb on + strand, within Atu6018at 27.936 kb on + strand, within Atu6018at 27.936 kb on + strand, within Atu6018at 27.936 kb on + strand, within Atu6018at 27.956 kb on - strand, within Atu6018at 27.965 kb on - strand, within Atu6018at 27.998 kb on - strand, within Atu6018at 27.998 kb on - strand, within Atu6018at 28.050 kb on + strand, within Atu6018at 28.055 kb on + strand, within Atu6018at 28.055 kb on + strand, within Atu6018at 28.058 kb on - strand, within Atu6018at 28.063 kb on - strand, within Atu6018at 28.063 kb on - strand, within Atu6018at 28.064 kb on + strand, within Atu6018at 28.121 kb on + strand, within Atu6018at 28.136 kb on + strandat 28.145 kb on - strandat 28.205 kb on + strandat 28.210 kb on + strandat 28.261 kb on - strandat 28.276 kb on + strandat 28.332 kb on - strandat 28.366 kb on - strandat 28.387 kb on + strandat 28.400 kb on + strandat 28.408 kb on - strandat 28.408 kb on - strandat 28.413 kb on + strandat 28.427 kb on + strand, within Atu6019at 28.443 kb on + strand, within Atu6019at 28.450 kb on + strand, within Atu6019at 28.480 kb on - strand, within Atu6019at 28.482 kb on + strand, within Atu6019at 28.515 kb on - strand, within Atu6019at 28.539 kb on + strand, within Atu6019at 28.592 kb on - strand, within Atu6019at 28.598 kb on + strand, within Atu6019at 28.657 kb on - strand, within Atu6019at 28.670 kb on + strand, within Atu6019at 28.675 kb on + strand, within Atu6019at 28.678 kb on - strand, within Atu6019at 28.765 kb on - strand, within Atu6019at 28.774 kb on + strand, within Atu6019at 28.781 kb on + strand, within Atu6019at 28.781 kb on + strand, within Atu6019at 28.781 kb on + strand, within Atu6019at 28.784 kb on + strand, within Atu6019at 28.789 kb on - strand, within Atu6019at 28.789 kb on - strand, within Atu6019at 28.795 kb on + strand, within Atu6019at 28.795 kb on + strand, within Atu6019at 28.803 kb on - strand, within Atu6019at 28.805 kb on + strand, within Atu6019at 28.805 kb on + strand, within Atu6019at 28.813 kb on - strand, within Atu6019at 28.863 kb on + strand, within Atu6019at 28.869 kb on - strand, within Atu6019at 29.003 kb on - strand, within Atu6019at 29.005 kb on + strand, within Atu6019at 29.025 kb on - strand, within Atu6019at 29.044 kb on - strand, within Atu6019at 29.049 kb on - strand, within Atu6019at 29.091 kb on - strand, within Atu6019at 29.091 kb on - strand, within Atu6019at 29.094 kb on - strand, within Atu6019at 29.094 kb on - strand, within Atu6019at 29.127 kb on - strand, within Atu6019at 29.189 kb on + strand, within Atu6019at 29.189 kb on + strand, within Atu6019at 29.195 kb on - strand, within Atu6019at 29.197 kb on - strand, within Atu6019at 29.197 kb on - strand, within Atu6019at 29.202 kb on + strand, within Atu6019at 29.202 kb on + strand, within Atu6019at 29.210 kb on - strand, within Atu6019

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-ascorbate (C)
remove
26,254 - Atu6017 0.15 -0.6
26,254 - Atu6017 0.15 +0.3
26,254 - Atu6017 0.15 +0.5
26,272 - Atu6017 0.17 -0.2
26,280 + Atu6017 0.17 -0.0
26,282 + Atu6017 0.18 -1.0
26,282 + Atu6017 0.18 -0.8
26,309 - Atu6017 0.20 +0.6
26,314 - Atu6017 0.20 -0.4
26,335 + Atu6017 0.22 +0.9
26,455 - Atu6017 0.34 -0.4
26,493 + Atu6017 0.37 +2.3
26,495 + Atu6017 0.37 +0.9
26,501 - Atu6017 0.38 +0.5
26,530 + Atu6017 0.40 -0.5
26,538 - Atu6017 0.41 +0.8
26,575 - Atu6017 0.45 -0.5
26,582 + Atu6017 0.45 -0.4
26,585 - Atu6017 0.46 +0.5
26,593 + Atu6017 0.46 -0.2
26,619 - Atu6017 0.49 -0.1
26,654 + Atu6017 0.52 -0.0
26,709 - Atu6017 0.57 -0.8
26,709 - Atu6017 0.57 -0.1
26,717 + Atu6017 0.58 -1.2
26,771 + Atu6017 0.63 -0.2
26,779 - Atu6017 0.63 +0.3
26,786 + Atu6017 0.64 -0.2
26,786 + Atu6017 0.64 -0.3
26,786 + Atu6017 0.64 -0.8
26,786 + Atu6017 0.64 -0.2
26,794 - Atu6017 0.65 +1.1
26,794 - Atu6017 0.65 -0.0
26,794 - Atu6017 0.65 +0.6
26,794 - Atu6017 0.65 +0.3
26,843 + Atu6017 0.69 +1.5
26,868 - Atu6017 0.72 +0.9
26,875 + Atu6017 0.72 +0.3
26,917 + Atu6017 0.76 -0.1
26,942 - Atu6017 0.78 +1.1
26,942 - Atu6017 0.78 +0.5
27,012 + Atu6017 0.85 +1.0
27,012 + Atu6017 0.85 +0.8
27,018 - Atu6017 0.86 +0.1
27,020 - Atu6017 0.86 -0.3
27,020 - Atu6017 0.86 -0.3
27,025 - Atu6017 0.86 -0.0
27,029 + Atu6017 0.87 -0.3
27,030 - Atu6017 0.87 +0.3
27,037 - Atu6017 0.87 +0.5
27,099 - +0.8
27,107 - +1.8
27,132 + +0.4
27,142 + -0.5
27,167 + +0.4
27,205 - -0.6
27,215 + -0.6
27,243 - +0.1
27,243 - +1.8
27,261 + -0.1
27,269 - -0.2
27,301 + -0.3
27,312 + +0.8
27,387 - Atu6018 0.14 +0.6
27,400 - Atu6018 0.15 +0.8
27,450 + Atu6018 0.20 -0.6
27,450 + Atu6018 0.20 +0.2
27,460 + Atu6018 0.21 +0.5
27,460 + Atu6018 0.21 -0.3
27,468 - Atu6018 0.22 -0.8
27,511 + Atu6018 0.27 -1.1
27,521 + Atu6018 0.28 -0.2
27,544 - Atu6018 0.30 -0.2
27,551 + Atu6018 0.31 +0.8
27,598 + Atu6018 0.36 +0.0
27,608 + Atu6018 0.37 +1.1
27,698 + Atu6018 0.46 -0.7
27,703 + Atu6018 0.46 -0.8
27,735 + Atu6018 0.50 -0.5
27,754 - Atu6018 0.52 +1.2
27,782 + Atu6018 0.54 +0.8
27,785 - Atu6018 0.55 +0.8
27,788 - Atu6018 0.55 +0.9
27,788 - Atu6018 0.55 +0.4
27,819 - Atu6018 0.58 +0.1
27,825 + Atu6018 0.59 +0.7
27,853 + Atu6018 0.62 -1.3
27,856 - Atu6018 0.62 +0.2
27,904 + Atu6018 0.67 -0.1
27,907 - Atu6018 0.67 -0.1
27,926 + Atu6018 0.69 -0.5
27,936 + Atu6018 0.70 -0.1
27,936 + Atu6018 0.70 +0.4
27,936 + Atu6018 0.70 +0.6
27,956 - Atu6018 0.72 +0.1
27,965 - Atu6018 0.73 +0.4
27,998 - Atu6018 0.77 +0.5
27,998 - Atu6018 0.77 +0.0
28,050 + Atu6018 0.82 +0.6
28,055 + Atu6018 0.82 +1.3
28,055 + Atu6018 0.82 +0.3
28,058 - Atu6018 0.83 -1.9
28,063 - Atu6018 0.83 +1.3
28,063 - Atu6018 0.83 +1.5
28,064 + Atu6018 0.83 +0.4
28,121 + Atu6018 0.89 -0.1
28,136 + +0.6
28,145 - -0.2
28,205 + +0.3
28,210 + -0.3
28,261 - +0.4
28,276 + -1.8
28,332 - -0.1
28,366 - +1.6
28,387 + +0.9
28,400 + +0.6
28,408 - -0.6
28,408 - +0.5
28,413 + -0.1
28,427 + Atu6019 0.11 -1.0
28,443 + Atu6019 0.12 +0.6
28,450 + Atu6019 0.12 +0.2
28,480 - Atu6019 0.15 -1.7
28,482 + Atu6019 0.15 +1.0
28,515 - Atu6019 0.17 -0.2
28,539 + Atu6019 0.19 +0.1
28,592 - Atu6019 0.22 +0.1
28,598 + Atu6019 0.23 +0.0
28,657 - Atu6019 0.27 -0.6
28,670 + Atu6019 0.28 +0.5
28,675 + Atu6019 0.28 +0.0
28,678 - Atu6019 0.29 -0.1
28,765 - Atu6019 0.35 +0.1
28,774 + Atu6019 0.35 +0.8
28,781 + Atu6019 0.36 +0.6
28,781 + Atu6019 0.36 +0.2
28,781 + Atu6019 0.36 -1.5
28,784 + Atu6019 0.36 -0.0
28,789 - Atu6019 0.36 +0.8
28,789 - Atu6019 0.36 +1.0
28,795 + Atu6019 0.37 +0.8
28,795 + Atu6019 0.37 +1.3
28,803 - Atu6019 0.37 +0.7
28,805 + Atu6019 0.37 +0.3
28,805 + Atu6019 0.37 -0.1
28,813 - Atu6019 0.38 +0.7
28,863 + Atu6019 0.42 +1.3
28,869 - Atu6019 0.42 -0.1
29,003 - Atu6019 0.51 +1.5
29,005 + Atu6019 0.52 +0.3
29,025 - Atu6019 0.53 +0.5
29,044 - Atu6019 0.54 +0.1
29,049 - Atu6019 0.55 +3.1
29,091 - Atu6019 0.58 +1.8
29,091 - Atu6019 0.58 +0.3
29,094 - Atu6019 0.58 +0.2
29,094 - Atu6019 0.58 +1.1
29,127 - Atu6019 0.60 +1.0
29,189 + Atu6019 0.65 +0.1
29,189 + Atu6019 0.65 -0.1
29,195 - Atu6019 0.65 +0.3
29,197 - Atu6019 0.65 +0.9
29,197 - Atu6019 0.65 -0.7
29,202 + Atu6019 0.65 +0.3
29,202 + Atu6019 0.65 -0.3
29,210 - Atu6019 0.66 -0.7

Or see this region's nucleotide sequence