Strain Fitness in Agrobacterium fabrum C58 around Atu5474

Experiment: L-ascorbate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5473 and Atu5474 are separated by 61 nucleotidesAtu5474 and Atu5475 are separated by 31 nucleotidesAtu5475 and Atu5476 are separated by 39 nucleotides Atu5473: Atu5473 - D-alanine aminotransferase, at 465,274 to 466,146 Atu5473 Atu5474: Atu5474 - 2-hydroxyacid dehydrogenase, at 466,208 to 467,143 Atu5474 Atu5475: Atu5475 - hypothetical protein, at 467,175 to 467,588 Atu5475 Atu5476: Atu5476 - CTP synthase, at 467,628 to 468,851 Atu5476 Position (kb) 466 467 468Strain fitness (log2 ratio) -2 -1 0 1 2at 465.235 kb on - strandat 465.328 kb on + strandat 465.358 kb on - strandat 465.360 kb on - strandat 465.406 kb on + strand, within Atu5473at 465.406 kb on + strand, within Atu5473at 465.487 kb on + strand, within Atu5473at 465.487 kb on + strand, within Atu5473at 465.520 kb on + strand, within Atu5473at 465.574 kb on + strand, within Atu5473at 465.607 kb on + strand, within Atu5473at 465.607 kb on + strand, within Atu5473at 465.627 kb on + strand, within Atu5473at 465.770 kb on + strand, within Atu5473at 465.778 kb on - strand, within Atu5473at 465.833 kb on + strand, within Atu5473at 465.847 kb on - strand, within Atu5473at 465.865 kb on + strand, within Atu5473at 465.873 kb on - strand, within Atu5473at 465.881 kb on + strand, within Atu5473at 465.926 kb on + strand, within Atu5473at 465.957 kb on + strand, within Atu5473at 465.969 kb on + strand, within Atu5473at 466.069 kb on + strandat 466.099 kb on + strandat 466.135 kb on + strandat 466.150 kb on + strandat 466.150 kb on + strandat 466.181 kb on - strandat 466.206 kb on + strandat 466.209 kb on - strandat 466.211 kb on - strandat 466.243 kb on + strandat 466.248 kb on + strandat 466.271 kb on + strandat 466.275 kb on - strandat 466.350 kb on + strand, within Atu5474at 466.358 kb on - strand, within Atu5474at 466.358 kb on - strand, within Atu5474at 466.431 kb on + strand, within Atu5474at 466.478 kb on + strand, within Atu5474at 466.491 kb on + strand, within Atu5474at 466.499 kb on - strand, within Atu5474at 466.518 kb on + strand, within Atu5474at 466.536 kb on - strand, within Atu5474at 466.557 kb on + strand, within Atu5474at 466.616 kb on + strand, within Atu5474at 466.690 kb on - strand, within Atu5474at 466.707 kb on + strand, within Atu5474at 466.719 kb on - strand, within Atu5474at 466.752 kb on + strand, within Atu5474at 466.807 kb on - strand, within Atu5474at 466.832 kb on + strand, within Atu5474at 466.835 kb on - strand, within Atu5474at 466.853 kb on + strand, within Atu5474at 466.909 kb on + strand, within Atu5474at 466.922 kb on - strand, within Atu5474at 466.987 kb on + strand, within Atu5474at 467.094 kb on + strandat 467.173 kb on - strandat 467.202 kb on + strandat 467.301 kb on + strand, within Atu5475at 467.386 kb on + strand, within Atu5475at 467.501 kb on + strand, within Atu5475at 467.519 kb on - strand, within Atu5475at 467.547 kb on - strandat 467.593 kb on - strandat 467.629 kb on + strandat 467.635 kb on + strandat 467.643 kb on - strandat 467.779 kb on - strand, within Atu5476at 467.786 kb on - strand, within Atu5476at 467.801 kb on + strand, within Atu5476at 467.809 kb on - strand, within Atu5476at 467.829 kb on + strand, within Atu5476at 467.832 kb on - strand, within Atu5476at 467.870 kb on + strand, within Atu5476at 467.885 kb on + strand, within Atu5476at 467.885 kb on + strand, within Atu5476at 467.885 kb on + strand, within Atu5476at 467.890 kb on + strand, within Atu5476at 467.893 kb on - strand, within Atu5476at 467.893 kb on - strand, within Atu5476at 467.893 kb on - strand, within Atu5476at 467.916 kb on + strand, within Atu5476at 467.943 kb on - strand, within Atu5476at 468.137 kb on - strand, within Atu5476

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Per-strain Table

Position Strand Gene LocusTag Fraction L-ascorbate (C)
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465,235 - -0.2
465,328 + +0.0
465,358 - +0.7
465,360 - -0.7
465,406 + Atu5473 0.15 -1.1
465,406 + Atu5473 0.15 +0.1
465,487 + Atu5473 0.24 -0.1
465,487 + Atu5473 0.24 +1.7
465,520 + Atu5473 0.28 +1.1
465,574 + Atu5473 0.34 +0.0
465,607 + Atu5473 0.38 +0.8
465,607 + Atu5473 0.38 -0.4
465,627 + Atu5473 0.40 -0.0
465,770 + Atu5473 0.57 -0.4
465,778 - Atu5473 0.58 +0.4
465,833 + Atu5473 0.64 +0.7
465,847 - Atu5473 0.66 +2.7
465,865 + Atu5473 0.68 -0.8
465,873 - Atu5473 0.69 +0.7
465,881 + Atu5473 0.70 -1.2
465,926 + Atu5473 0.75 +0.0
465,957 + Atu5473 0.78 +1.5
465,969 + Atu5473 0.80 +0.9
466,069 + +0.0
466,099 + -0.1
466,135 + -1.8
466,150 + -0.0
466,150 + +0.2
466,181 - +1.2
466,206 + +0.7
466,209 - +1.1
466,211 - +0.3
466,243 + +0.7
466,248 + -1.4
466,271 + +0.1
466,275 - +0.1
466,350 + Atu5474 0.15 -0.5
466,358 - Atu5474 0.16 +0.0
466,358 - Atu5474 0.16 -0.5
466,431 + Atu5474 0.24 -0.6
466,478 + Atu5474 0.29 +0.2
466,491 + Atu5474 0.30 +0.4
466,499 - Atu5474 0.31 -0.0
466,518 + Atu5474 0.33 +0.7
466,536 - Atu5474 0.35 +0.2
466,557 + Atu5474 0.37 +0.4
466,616 + Atu5474 0.44 -0.6
466,690 - Atu5474 0.51 -0.2
466,707 + Atu5474 0.53 -0.6
466,719 - Atu5474 0.55 -0.4
466,752 + Atu5474 0.58 -1.5
466,807 - Atu5474 0.64 -0.1
466,832 + Atu5474 0.67 +0.7
466,835 - Atu5474 0.67 +0.4
466,853 + Atu5474 0.69 +0.2
466,909 + Atu5474 0.75 +0.9
466,922 - Atu5474 0.76 +0.4
466,987 + Atu5474 0.83 +0.4
467,094 + -0.3
467,173 - -0.6
467,202 + -1.2
467,301 + Atu5475 0.30 -1.9
467,386 + Atu5475 0.51 -0.3
467,501 + Atu5475 0.79 -0.3
467,519 - Atu5475 0.83 +0.4
467,547 - -0.2
467,593 - -0.4
467,629 + +0.4
467,635 + +0.0
467,643 - +0.8
467,779 - Atu5476 0.12 +1.0
467,786 - Atu5476 0.13 -0.3
467,801 + Atu5476 0.14 +0.7
467,809 - Atu5476 0.15 -0.4
467,829 + Atu5476 0.16 -0.6
467,832 - Atu5476 0.17 -1.0
467,870 + Atu5476 0.20 -0.3
467,885 + Atu5476 0.21 -0.4
467,885 + Atu5476 0.21 -0.1
467,885 + Atu5476 0.21 +0.7
467,890 + Atu5476 0.21 -0.8
467,893 - Atu5476 0.22 +0.0
467,893 - Atu5476 0.22 -0.9
467,893 - Atu5476 0.22 -1.2
467,916 + Atu5476 0.24 +1.7
467,943 - Atu5476 0.26 +0.2
468,137 - Atu5476 0.42 +0.9

Or see this region's nucleotide sequence