Experiment: L-ascorbate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3783 and Atu3784 are separated by 182 nucleotides Atu3784 and Atu3785 are separated by 371 nucleotides
Atu3783: Atu3783 - glutamate synthase subunit beta, at 866,780 to 868,234
Atu3783
Atu3784: Atu3784 - glutamate synthase large subunit, at 868,417 to 873,162
Atu3784
Atu3785: Atu3785 - threonine aldolase, at 873,534 to 874,586
Atu3785
Position (kb) 868
869
870
871
872
873
874 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 867.442 kb on - strand, within Atu3783 at 867.447 kb on + strand, within Atu3783 at 867.447 kb on + strand, within Atu3783 at 867.455 kb on - strand, within Atu3783 at 867.455 kb on - strand, within Atu3783 at 867.591 kb on - strand, within Atu3783 at 867.595 kb on + strand, within Atu3783 at 867.615 kb on + strand, within Atu3783 at 867.615 kb on + strand, within Atu3783 at 867.623 kb on - strand, within Atu3783 at 867.623 kb on - strand, within Atu3783 at 867.623 kb on - strand, within Atu3783 at 867.655 kb on - strand, within Atu3783 at 867.667 kb on + strand, within Atu3783 at 867.675 kb on + strand, within Atu3783 at 867.689 kb on + strand, within Atu3783 at 867.829 kb on + strand, within Atu3783 at 867.849 kb on - strand, within Atu3783 at 867.866 kb on - strand, within Atu3783 at 867.939 kb on - strand, within Atu3783 at 868.024 kb on - strand, within Atu3783 at 868.076 kb on + strand, within Atu3783 at 868.120 kb on - strand at 868.176 kb on - strand at 868.218 kb on + strand at 868.218 kb on + strand at 868.272 kb on + strand at 868.318 kb on + strand at 868.481 kb on + strand at 868.488 kb on - strand at 868.669 kb on - strand at 868.760 kb on + strand at 868.805 kb on + strand at 868.850 kb on - strand at 868.866 kb on - strand at 868.899 kb on + strand, within Atu3784 at 868.907 kb on - strand, within Atu3784 at 868.907 kb on - strand, within Atu3784 at 869.062 kb on - strand, within Atu3784 at 869.111 kb on + strand, within Atu3784 at 869.119 kb on - strand, within Atu3784 at 869.139 kb on + strand, within Atu3784 at 869.161 kb on + strand, within Atu3784 at 869.161 kb on + strand, within Atu3784 at 869.177 kb on + strand, within Atu3784 at 869.251 kb on + strand, within Atu3784 at 869.279 kb on + strand, within Atu3784 at 869.342 kb on + strand, within Atu3784 at 869.445 kb on + strand, within Atu3784 at 869.563 kb on - strand, within Atu3784 at 869.576 kb on + strand, within Atu3784 at 869.592 kb on - strand, within Atu3784 at 869.661 kb on - strand, within Atu3784 at 869.732 kb on + strand, within Atu3784 at 869.765 kb on - strand, within Atu3784 at 869.765 kb on - strand, within Atu3784 at 869.800 kb on + strand, within Atu3784 at 869.879 kb on + strand, within Atu3784 at 869.885 kb on - strand, within Atu3784 at 869.987 kb on + strand, within Atu3784 at 870.049 kb on - strand, within Atu3784 at 870.099 kb on + strand, within Atu3784 at 870.121 kb on + strand, within Atu3784 at 870.149 kb on + strand, within Atu3784 at 870.157 kb on - strand, within Atu3784 at 870.157 kb on - strand, within Atu3784 at 870.297 kb on - strand, within Atu3784 at 870.299 kb on + strand, within Atu3784 at 870.307 kb on - strand, within Atu3784 at 870.307 kb on - strand, within Atu3784 at 870.307 kb on - strand, within Atu3784 at 870.329 kb on - strand, within Atu3784 at 870.394 kb on - strand, within Atu3784 at 870.424 kb on - strand, within Atu3784 at 870.488 kb on - strand, within Atu3784 at 870.544 kb on + strand, within Atu3784 at 870.664 kb on + strand, within Atu3784 at 870.664 kb on + strand, within Atu3784 at 870.672 kb on - strand, within Atu3784 at 870.672 kb on - strand, within Atu3784 at 870.704 kb on - strand, within Atu3784 at 870.727 kb on + strand, within Atu3784 at 870.735 kb on - strand, within Atu3784 at 870.818 kb on + strand, within Atu3784 at 870.858 kb on + strand, within Atu3784 at 870.987 kb on + strand, within Atu3784 at 871.035 kb on + strand, within Atu3784 at 871.069 kb on + strand, within Atu3784 at 871.069 kb on + strand, within Atu3784 at 871.077 kb on - strand, within Atu3784 at 871.077 kb on - strand, within Atu3784 at 871.182 kb on - strand, within Atu3784 at 871.247 kb on - strand, within Atu3784 at 871.344 kb on + strand, within Atu3784 at 871.344 kb on + strand, within Atu3784 at 871.386 kb on - strand, within Atu3784 at 871.505 kb on + strand, within Atu3784 at 871.535 kb on + strand, within Atu3784 at 871.691 kb on + strand, within Atu3784 at 871.691 kb on - strand, within Atu3784 at 871.699 kb on - strand, within Atu3784 at 871.722 kb on + strand, within Atu3784 at 871.730 kb on - strand, within Atu3784 at 871.730 kb on - strand, within Atu3784 at 871.888 kb on + strand, within Atu3784 at 871.913 kb on - strand, within Atu3784 at 871.956 kb on - strand, within Atu3784 at 872.003 kb on + strand, within Atu3784 at 872.065 kb on - strand, within Atu3784 at 872.323 kb on - strand, within Atu3784 at 872.512 kb on - strand, within Atu3784 at 872.514 kb on + strand, within Atu3784 at 872.554 kb on - strand, within Atu3784 at 872.608 kb on + strand, within Atu3784 at 872.616 kb on - strand, within Atu3784 at 872.648 kb on - strand, within Atu3784 at 872.698 kb on + strand at 872.821 kb on - strand at 872.895 kb on + strand at 873.099 kb on - strand at 873.099 kb on - strand at 873.123 kb on + strand at 873.162 kb on + strand at 873.205 kb on + strand at 873.213 kb on - strand at 873.495 kb on + strand at 873.495 kb on + strand at 873.495 kb on + strand at 873.495 kb on + strand at 873.495 kb on + strand at 873.495 kb on + strand at 873.495 kb on + strand at 873.495 kb on + strand at 873.495 kb on + strand at 873.495 kb on + strand at 873.503 kb on - strand at 873.503 kb on - strand at 873.503 kb on - strand at 873.636 kb on + strand at 873.644 kb on + strand, within Atu3785 at 873.739 kb on + strand, within Atu3785 at 873.830 kb on + strand, within Atu3785 at 873.901 kb on + strand, within Atu3785 at 873.928 kb on - strand, within Atu3785 at 873.981 kb on - strand, within Atu3785 at 874.056 kb on + strand, within Atu3785
Per-strain Table
Position Strand Gene LocusTag Fraction L-ascorbate (C) remove 867,442 - Atu3783 0.45 -4.4 867,447 + Atu3783 0.46 -4.3 867,447 + Atu3783 0.46 -1.4 867,455 - Atu3783 0.46 -3.9 867,455 - Atu3783 0.46 -2.0 867,591 - Atu3783 0.56 -3.3 867,595 + Atu3783 0.56 -5.1 867,615 + Atu3783 0.57 -3.2 867,615 + Atu3783 0.57 -2.2 867,623 - Atu3783 0.58 -3.3 867,623 - Atu3783 0.58 -4.3 867,623 - Atu3783 0.58 -3.2 867,655 - Atu3783 0.60 -2.3 867,667 + Atu3783 0.61 -1.0 867,675 + Atu3783 0.62 -4.2 867,689 + Atu3783 0.62 -3.8 867,829 + Atu3783 0.72 -2.7 867,849 - Atu3783 0.73 -1.4 867,866 - Atu3783 0.75 -2.0 867,939 - Atu3783 0.80 -4.8 868,024 - Atu3783 0.85 -3.2 868,076 + Atu3783 0.89 -3.3 868,120 - -3.2 868,176 - -2.9 868,218 + -0.3 868,218 + -1.7 868,272 + +1.0 868,318 + -0.1 868,481 + -0.4 868,488 - -2.3 868,669 - -1.0 868,760 + -1.1 868,805 + -1.6 868,850 - -1.4 868,866 - -2.3 868,899 + Atu3784 0.10 -4.1 868,907 - Atu3784 0.10 -2.3 868,907 - Atu3784 0.10 -2.9 869,062 - Atu3784 0.14 -2.2 869,111 + Atu3784 0.15 -0.3 869,119 - Atu3784 0.15 -3.1 869,139 + Atu3784 0.15 -2.6 869,161 + Atu3784 0.16 -1.8 869,161 + Atu3784 0.16 -0.0 869,177 + Atu3784 0.16 -3.2 869,251 + Atu3784 0.18 -1.8 869,279 + Atu3784 0.18 -2.6 869,342 + Atu3784 0.19 -1.1 869,445 + Atu3784 0.22 +0.4 869,563 - Atu3784 0.24 -2.4 869,576 + Atu3784 0.24 -2.3 869,592 - Atu3784 0.25 -1.8 869,661 - Atu3784 0.26 -2.8 869,732 + Atu3784 0.28 -5.1 869,765 - Atu3784 0.28 -2.0 869,765 - Atu3784 0.28 -2.0 869,800 + Atu3784 0.29 +1.2 869,879 + Atu3784 0.31 -2.4 869,885 - Atu3784 0.31 -2.8 869,987 + Atu3784 0.33 -3.2 870,049 - Atu3784 0.34 -1.9 870,099 + Atu3784 0.35 -2.5 870,121 + Atu3784 0.36 -2.5 870,149 + Atu3784 0.36 -0.2 870,157 - Atu3784 0.37 -1.6 870,157 - Atu3784 0.37 -2.7 870,297 - Atu3784 0.40 -1.6 870,299 + Atu3784 0.40 -0.7 870,307 - Atu3784 0.40 +0.1 870,307 - Atu3784 0.40 -3.5 870,307 - Atu3784 0.40 -1.2 870,329 - Atu3784 0.40 +0.6 870,394 - Atu3784 0.42 -1.9 870,424 - Atu3784 0.42 -1.2 870,488 - Atu3784 0.44 -2.7 870,544 + Atu3784 0.45 -3.0 870,664 + Atu3784 0.47 -2.5 870,664 + Atu3784 0.47 -3.7 870,672 - Atu3784 0.48 -2.5 870,672 - Atu3784 0.48 -1.3 870,704 - Atu3784 0.48 -2.2 870,727 + Atu3784 0.49 -2.7 870,735 - Atu3784 0.49 -2.5 870,818 + Atu3784 0.51 -3.9 870,858 + Atu3784 0.51 -2.4 870,987 + Atu3784 0.54 -1.5 871,035 + Atu3784 0.55 -2.6 871,069 + Atu3784 0.56 -1.0 871,069 + Atu3784 0.56 -2.1 871,077 - Atu3784 0.56 -2.9 871,077 - Atu3784 0.56 -1.9 871,182 - Atu3784 0.58 -3.1 871,247 - Atu3784 0.60 -2.9 871,344 + Atu3784 0.62 -2.2 871,344 + Atu3784 0.62 -1.7 871,386 - Atu3784 0.63 -2.3 871,505 + Atu3784 0.65 -1.4 871,535 + Atu3784 0.66 -2.6 871,691 + Atu3784 0.69 -2.2 871,691 - Atu3784 0.69 -3.1 871,699 - Atu3784 0.69 -1.9 871,722 + Atu3784 0.70 -2.3 871,730 - Atu3784 0.70 -2.6 871,730 - Atu3784 0.70 -1.8 871,888 + Atu3784 0.73 -1.9 871,913 - Atu3784 0.74 -1.4 871,956 - Atu3784 0.75 -1.5 872,003 + Atu3784 0.76 -2.4 872,065 - Atu3784 0.77 -2.3 872,323 - Atu3784 0.82 -2.3 872,512 - Atu3784 0.86 -3.3 872,514 + Atu3784 0.86 -3.3 872,554 - Atu3784 0.87 -2.1 872,608 + Atu3784 0.88 -1.7 872,616 - Atu3784 0.88 -3.5 872,648 - Atu3784 0.89 -1.8 872,698 + -1.2 872,821 - -2.2 872,895 + -2.5 873,099 - -2.6 873,099 - -1.8 873,123 + -2.7 873,162 + -0.7 873,205 + +0.8 873,213 - -0.3 873,495 + +0.2 873,495 + +0.3 873,495 + -0.1 873,495 + +0.2 873,495 + +1.3 873,495 + -1.6 873,495 + +0.8 873,495 + -0.5 873,495 + -0.1 873,495 + -0.0 873,503 - -0.3 873,503 - -0.5 873,503 - +0.1 873,636 + +0.0 873,644 + Atu3785 0.10 -0.3 873,739 + Atu3785 0.19 +0.5 873,830 + Atu3785 0.28 -0.2 873,901 + Atu3785 0.35 +0.2 873,928 - Atu3785 0.37 +0.2 873,981 - Atu3785 0.42 -0.0 874,056 + Atu3785 0.50 +0.3
Or see this region's nucleotide sequence