Experiment: L-ascorbate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3139 and Atu3140 are separated by 25 nucleotides Atu3140 and Atu3141 are separated by 113 nucleotides Atu3141 and Atu3142 overlap by 4 nucleotides
Atu3139: Atu3139 - hypothetical protein, at 146,982 to 148,118
Atu3139
Atu3140: Atu3140 - 5-dehydro-4-deoxyglucarate dehydratase, at 148,144 to 149,055
Atu3140
Atu3141: Atu3141 - 2-deoxy-D-gluconate 3-dehydrogenase, at 149,169 to 149,912
Atu3141
Atu3142: Atu3142 - 5-keto-4-deoxyuronate isomerase, at 149,909 to 150,733
Atu3142
Position (kb) 148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 147.182 kb on - strand, within Atu3139 at 147.231 kb on - strand, within Atu3139 at 147.520 kb on + strand, within Atu3139 at 147.526 kb on - strand, within Atu3139 at 147.528 kb on - strand, within Atu3139 at 147.528 kb on - strand, within Atu3139 at 147.528 kb on - strand, within Atu3139 at 147.554 kb on + strand, within Atu3139 at 147.711 kb on - strand, within Atu3139 at 147.720 kb on + strand, within Atu3139 at 147.769 kb on - strand, within Atu3139 at 147.786 kb on - strand, within Atu3139 at 147.792 kb on - strand, within Atu3139 at 147.822 kb on + strand, within Atu3139 at 147.822 kb on + strand, within Atu3139 at 147.822 kb on + strand, within Atu3139 at 147.844 kb on - strand, within Atu3139 at 147.859 kb on - strand, within Atu3139 at 147.866 kb on + strand, within Atu3139 at 147.874 kb on - strand, within Atu3139 at 147.874 kb on - strand, within Atu3139 at 147.935 kb on - strand, within Atu3139 at 147.939 kb on - strand, within Atu3139 at 147.944 kb on - strand, within Atu3139 at 147.975 kb on + strand, within Atu3139 at 148.044 kb on + strand at 148.074 kb on - strand at 148.168 kb on + strand at 148.210 kb on + strand at 148.243 kb on + strand, within Atu3140 at 148.251 kb on + strand, within Atu3140 at 148.280 kb on + strand, within Atu3140 at 148.280 kb on + strand, within Atu3140 at 148.294 kb on - strand, within Atu3140 at 148.329 kb on - strand, within Atu3140 at 148.371 kb on + strand, within Atu3140 at 148.376 kb on + strand, within Atu3140 at 148.376 kb on + strand, within Atu3140 at 148.384 kb on - strand, within Atu3140 at 148.384 kb on - strand, within Atu3140 at 148.419 kb on - strand, within Atu3140 at 148.440 kb on - strand, within Atu3140 at 148.440 kb on - strand, within Atu3140 at 148.681 kb on - strand, within Atu3140 at 148.888 kb on - strand, within Atu3140 at 148.893 kb on - strand, within Atu3140 at 148.939 kb on + strand, within Atu3140 at 148.958 kb on - strand, within Atu3140 at 149.043 kb on + strand at 149.056 kb on - strand at 149.056 kb on - strand at 149.209 kb on - strand at 149.316 kb on - strand, within Atu3141 at 149.392 kb on - strand, within Atu3141 at 149.455 kb on + strand, within Atu3141 at 149.455 kb on + strand, within Atu3141 at 149.455 kb on + strand, within Atu3141 at 149.463 kb on - strand, within Atu3141 at 149.689 kb on + strand, within Atu3141 at 149.692 kb on - strand, within Atu3141 at 149.765 kb on + strand, within Atu3141 at 149.771 kb on - strand, within Atu3141 at 149.797 kb on + strand, within Atu3141 at 149.797 kb on + strand, within Atu3141 at 149.805 kb on - strand, within Atu3141 at 149.815 kb on - strand, within Atu3141 at 149.831 kb on - strand, within Atu3141 at 149.920 kb on - strand at 149.964 kb on - strand at 149.978 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-ascorbate (C) remove 147,182 - Atu3139 0.18 -0.0 147,231 - Atu3139 0.22 -0.4 147,520 + Atu3139 0.47 -0.1 147,526 - Atu3139 0.48 +0.7 147,528 - Atu3139 0.48 -0.5 147,528 - Atu3139 0.48 +0.4 147,528 - Atu3139 0.48 +0.7 147,554 + Atu3139 0.50 -0.7 147,711 - Atu3139 0.64 +0.3 147,720 + Atu3139 0.65 +0.4 147,769 - Atu3139 0.69 +0.3 147,786 - Atu3139 0.71 +0.4 147,792 - Atu3139 0.71 -0.0 147,822 + Atu3139 0.74 -0.1 147,822 + Atu3139 0.74 +0.7 147,822 + Atu3139 0.74 +0.5 147,844 - Atu3139 0.76 +0.1 147,859 - Atu3139 0.77 -0.1 147,866 + Atu3139 0.78 +0.6 147,874 - Atu3139 0.78 +0.4 147,874 - Atu3139 0.78 +0.1 147,935 - Atu3139 0.84 +0.4 147,939 - Atu3139 0.84 -0.9 147,944 - Atu3139 0.85 -0.4 147,975 + Atu3139 0.87 +0.0 148,044 + +0.6 148,074 - +0.3 148,168 + +0.3 148,210 + -0.6 148,243 + Atu3140 0.11 +0.1 148,251 + Atu3140 0.12 +0.1 148,280 + Atu3140 0.15 +0.0 148,280 + Atu3140 0.15 +0.4 148,294 - Atu3140 0.16 +0.6 148,329 - Atu3140 0.20 -0.1 148,371 + Atu3140 0.25 -0.0 148,376 + Atu3140 0.25 -0.3 148,376 + Atu3140 0.25 +0.3 148,384 - Atu3140 0.26 +0.6 148,384 - Atu3140 0.26 -0.1 148,419 - Atu3140 0.30 +0.0 148,440 - Atu3140 0.32 -0.6 148,440 - Atu3140 0.32 +0.1 148,681 - Atu3140 0.59 +0.5 148,888 - Atu3140 0.82 -0.0 148,893 - Atu3140 0.82 -0.2 148,939 + Atu3140 0.87 -0.4 148,958 - Atu3140 0.89 +0.2 149,043 + -0.9 149,056 - +0.4 149,056 - +1.1 149,209 - -1.0 149,316 - Atu3141 0.20 -0.4 149,392 - Atu3141 0.30 +0.3 149,455 + Atu3141 0.38 -0.9 149,455 + Atu3141 0.38 +1.8 149,455 + Atu3141 0.38 +0.4 149,463 - Atu3141 0.40 +0.8 149,689 + Atu3141 0.70 -0.4 149,692 - Atu3141 0.70 +0.3 149,765 + Atu3141 0.80 +0.2 149,771 - Atu3141 0.81 +0.1 149,797 + Atu3141 0.84 +0.5 149,797 + Atu3141 0.84 +0.1 149,805 - Atu3141 0.85 +0.3 149,815 - Atu3141 0.87 +0.2 149,831 - Atu3141 0.89 +0.0 149,920 - -0.4 149,964 - -3.0 149,978 + +0.6
Or see this region's nucleotide sequence