Strain Fitness in Agrobacterium fabrum C58 around Atu2100

Experiment: L-ascorbate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2099 and Atu2100 are separated by 57 nucleotidesAtu2100 and Atu2101 overlap by 1 nucleotidesAtu2101 and Atu2102 are separated by 1 nucleotides Atu2099: Atu2099 - UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase, at 2,063,709 to 2,065,178 Atu2099 Atu2100: Atu2100 - penicillin binding protein 2, at 2,065,236 to 2,066,978 Atu2100 Atu2101: Atu2101 - hypothetical protein, at 2,066,978 to 2,067,544 Atu2101 Atu2102: Atu2102 - S-adenosyl methionine-dependent methytransferase, at 2,067,546 to 2,068,571 Atu2102 Position (kb) 2065 2066 2067Strain fitness (log2 ratio) -1 0 1 2at 2065.182 kb on - strandat 2067.003 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-ascorbate (C)
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2,065,182 - +1.1
2,067,003 - +2.1

Or see this region's nucleotide sequence