Strain Fitness in Agrobacterium fabrum C58 around Atu2099

Experiment: L-ascorbate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu2098 and Atu2099 overlap by 4 nucleotidesAtu2099 and Atu2100 are separated by 57 nucleotides Atu2098: Atu2098 - UDP-MurNAc-pentapeptide synthetase, at 2,062,279 to 2,063,712 Atu2098 Atu2099: Atu2099 - UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase, at 2,063,709 to 2,065,178 Atu2099 Atu2100: Atu2100 - penicillin binding protein 2, at 2,065,236 to 2,066,978 Atu2100 Position (kb) 2063 2064 2065 2066Strain fitness (log2 ratio) -1 0 1at 2063.751 kb on - strandat 2065.182 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-ascorbate (C)
remove
2,063,751 - +0.4
2,065,182 - +1.1

Or see this region's nucleotide sequence