Strain Fitness in Agrobacterium fabrum C58 around Atu2046

Experiment: L-ascorbate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2045 and Atu2046 are separated by 143 nucleotidesAtu2046 and Atu2047 overlap by 4 nucleotidesAtu2047 and Atu8170 are separated by 92 nucleotides Atu2045: Atu2045 - HFLK protein, at 2,004,069 to 2,005,187 Atu2045 Atu2046: Atu2046 - dihydrofolate reductase, at 2,005,331 to 2,005,858 Atu2046 Atu2047: Atu2047 - thymidylate synthase, at 2,005,855 to 2,006,649 Atu2047 Atu8170: Atu8170 - hypothetical protein, at 2,006,742 to 2,007,050 Atu8170 Position (kb) 2005 2006Strain fitness (log2 ratio) -2 -1 0 1at 2004.345 kb on - strand, within Atu2045at 2004.508 kb on - strand, within Atu2045at 2004.696 kb on - strand, within Atu2045at 2004.916 kb on + strand, within Atu2045at 2005.262 kb on + strandat 2005.281 kb on - strandat 2006.694 kb on - strandat 2006.735 kb on + strandat 2006.743 kb on - strandat 2006.748 kb on - strandat 2006.784 kb on + strand, within Atu8170

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Per-strain Table

Position Strand Gene LocusTag Fraction L-ascorbate (C)
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2,004,345 - Atu2045 0.25 -0.1
2,004,508 - Atu2045 0.39 +0.2
2,004,696 - Atu2045 0.56 +0.2
2,004,916 + Atu2045 0.76 -2.1
2,005,262 + +0.4
2,005,281 - +0.5
2,006,694 - +1.1
2,006,735 + +0.4
2,006,743 - -0.4
2,006,748 - +0.0
2,006,784 + Atu8170 0.14 -0.1

Or see this region's nucleotide sequence