Strain Fitness in Agrobacterium fabrum C58 around Atu0930

Experiment: L-ascorbate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0929 and Atu0930 are separated by 13 nucleotidesAtu0930 and Atu0931 are separated by 345 nucleotides Atu0929: Atu0929 - amide hydrolase, at 917,134 to 918,441 Atu0929 Atu0930: Atu0930 - hypothetical protein, at 918,455 to 919,900 Atu0930 Atu0931: Atu0931 - penicillin binding protein, at 920,246 to 922,519 Atu0931 Position (kb) 918 919 920Strain fitness (log2 ratio) -2 -1 0 1at 917.503 kb on - strand, within Atu0929at 917.645 kb on + strand, within Atu0929at 917.658 kb on - strand, within Atu0929at 917.688 kb on - strand, within Atu0929at 917.740 kb on + strand, within Atu0929at 917.762 kb on + strand, within Atu0929at 917.818 kb on + strand, within Atu0929at 917.843 kb on - strand, within Atu0929at 917.862 kb on - strand, within Atu0929at 918.007 kb on + strand, within Atu0929at 918.029 kb on - strand, within Atu0929at 918.043 kb on - strand, within Atu0929at 918.053 kb on + strand, within Atu0929at 918.053 kb on + strand, within Atu0929at 918.053 kb on + strand, within Atu0929at 918.059 kb on + strand, within Atu0929at 918.059 kb on + strand, within Atu0929at 918.059 kb on + strand, within Atu0929at 918.059 kb on + strand, within Atu0929at 918.059 kb on + strand, within Atu0929at 918.067 kb on - strand, within Atu0929at 918.067 kb on - strand, within Atu0929at 918.067 kb on - strand, within Atu0929at 918.067 kb on - strand, within Atu0929at 918.121 kb on + strand, within Atu0929at 918.130 kb on - strand, within Atu0929at 918.207 kb on - strand, within Atu0929at 918.244 kb on + strand, within Atu0929at 918.412 kb on + strandat 918.648 kb on - strand, within Atu0930at 918.702 kb on - strand, within Atu0930at 918.729 kb on + strand, within Atu0930at 918.747 kb on + strand, within Atu0930at 918.770 kb on - strand, within Atu0930at 918.783 kb on - strand, within Atu0930at 918.797 kb on - strand, within Atu0930at 918.861 kb on + strand, within Atu0930at 918.969 kb on + strand, within Atu0930at 919.103 kb on + strand, within Atu0930at 919.166 kb on + strand, within Atu0930at 919.246 kb on - strand, within Atu0930at 919.246 kb on - strand, within Atu0930at 919.246 kb on - strand, within Atu0930at 919.325 kb on + strand, within Atu0930at 919.402 kb on + strand, within Atu0930at 919.448 kb on - strand, within Atu0930at 919.493 kb on - strand, within Atu0930at 919.504 kb on + strand, within Atu0930at 919.504 kb on + strand, within Atu0930at 919.512 kb on - strand, within Atu0930at 919.512 kb on - strand, within Atu0930at 919.512 kb on - strand, within Atu0930at 919.512 kb on - strand, within Atu0930at 919.602 kb on - strand, within Atu0930at 919.658 kb on + strand, within Atu0930at 919.667 kb on - strand, within Atu0930at 919.699 kb on + strand, within Atu0930at 919.707 kb on - strand, within Atu0930at 919.766 kb on - strandat 919.802 kb on - strandat 919.819 kb on - strandat 920.093 kb on - strandat 920.162 kb on - strandat 920.170 kb on - strandat 920.246 kb on - strandat 920.249 kb on - strandat 920.401 kb on - strandat 920.426 kb on - strandat 920.518 kb on + strand, within Atu0931at 920.591 kb on + strand, within Atu0931at 920.627 kb on - strand, within Atu0931at 920.700 kb on + strand, within Atu0931at 920.708 kb on - strand, within Atu0931

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Per-strain Table

Position Strand Gene LocusTag Fraction L-ascorbate (C)
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917,503 - Atu0929 0.28 -0.5
917,645 + Atu0929 0.39 +0.1
917,658 - Atu0929 0.40 +0.3
917,688 - Atu0929 0.42 +0.9
917,740 + Atu0929 0.46 +0.1
917,762 + Atu0929 0.48 +0.5
917,818 + Atu0929 0.52 -0.2
917,843 - Atu0929 0.54 +0.1
917,862 - Atu0929 0.56 +0.1
918,007 + Atu0929 0.67 -0.5
918,029 - Atu0929 0.68 -0.1
918,043 - Atu0929 0.69 +1.4
918,053 + Atu0929 0.70 -0.6
918,053 + Atu0929 0.70 -0.7
918,053 + Atu0929 0.70 +1.2
918,059 + Atu0929 0.71 -0.3
918,059 + Atu0929 0.71 -1.7
918,059 + Atu0929 0.71 +0.1
918,059 + Atu0929 0.71 +0.1
918,059 + Atu0929 0.71 -2.6
918,067 - Atu0929 0.71 -1.3
918,067 - Atu0929 0.71 +0.3
918,067 - Atu0929 0.71 -0.3
918,067 - Atu0929 0.71 -0.0
918,121 + Atu0929 0.75 -0.6
918,130 - Atu0929 0.76 -0.4
918,207 - Atu0929 0.82 +0.8
918,244 + Atu0929 0.85 +0.4
918,412 + +0.1
918,648 - Atu0930 0.13 +0.4
918,702 - Atu0930 0.17 +0.0
918,729 + Atu0930 0.19 +0.1
918,747 + Atu0930 0.20 -0.5
918,770 - Atu0930 0.22 -0.5
918,783 - Atu0930 0.23 +0.3
918,797 - Atu0930 0.24 +0.4
918,861 + Atu0930 0.28 +0.7
918,969 + Atu0930 0.36 +1.1
919,103 + Atu0930 0.45 +0.1
919,166 + Atu0930 0.49 +0.0
919,246 - Atu0930 0.55 +0.5
919,246 - Atu0930 0.55 -0.0
919,246 - Atu0930 0.55 +0.2
919,325 + Atu0930 0.60 +0.4
919,402 + Atu0930 0.65 +0.1
919,448 - Atu0930 0.69 +0.3
919,493 - Atu0930 0.72 +1.2
919,504 + Atu0930 0.73 -0.5
919,504 + Atu0930 0.73 +0.2
919,512 - Atu0930 0.73 -0.1
919,512 - Atu0930 0.73 -0.0
919,512 - Atu0930 0.73 -0.6
919,512 - Atu0930 0.73 +0.3
919,602 - Atu0930 0.79 -2.0
919,658 + Atu0930 0.83 +0.3
919,667 - Atu0930 0.84 +0.5
919,699 + Atu0930 0.86 -0.4
919,707 - Atu0930 0.87 -0.2
919,766 - +0.2
919,802 - +0.3
919,819 - -0.3
920,093 - -0.8
920,162 - -0.6
920,170 - -0.1
920,246 - +0.5
920,249 - +0.1
920,401 - +0.7
920,426 - -0.6
920,518 + Atu0931 0.12 -2.2
920,591 + Atu0931 0.15 -0.3
920,627 - Atu0931 0.17 -2.3
920,700 + Atu0931 0.20 +0.4
920,708 - Atu0931 0.20 -1.6

Or see this region's nucleotide sequence