Experiment: L-ascorbate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0704 and Atu0705 overlap by 1 nucleotides Atu0705 and Atu0706 are separated by 109 nucleotides Atu0706 and Atu0707 are separated by 345 nucleotides
Atu0704: Atu0704 - 2-dehydro-3-deoxygalactonate kinase, at 704,239 to 705,153
Atu0704
Atu0705: Atu0705 - 3-oxoacyl-(acyl carrier protein) reductase, at 705,153 to 705,926
Atu0705
Atu0706: Atu0706 - transcriptional regulator, IclR family, at 706,036 to 706,875
Atu0706
Atu0707: Atu0707 - transcriptional regulator, LuxR family, at 707,221 to 707,826
Atu0707
Position (kb) 706
707 Strain fitness (log2 ratio) -2
-1
0
1 at 705.125 kb on - strand at 705.131 kb on - strand at 705.151 kb on + strand at 705.294 kb on + strand, within Atu0705 at 705.441 kb on - strand, within Atu0705 at 705.499 kb on + strand, within Atu0705 at 705.507 kb on - strand, within Atu0705 at 705.527 kb on - strand, within Atu0705 at 705.529 kb on + strand, within Atu0705 at 705.569 kb on + strand, within Atu0705 at 705.598 kb on - strand, within Atu0705 at 705.670 kb on + strand, within Atu0705 at 705.678 kb on - strand, within Atu0705 at 705.772 kb on + strand, within Atu0705 at 705.775 kb on - strand, within Atu0705 at 705.828 kb on + strand, within Atu0705 at 705.886 kb on + strand at 705.886 kb on + strand at 705.888 kb on - strand at 705.894 kb on - strand at 705.894 kb on - strand at 705.894 kb on - strand at 706.008 kb on + strand at 706.016 kb on - strand at 706.086 kb on - strand at 706.214 kb on - strand, within Atu0706 at 706.292 kb on + strand, within Atu0706 at 706.310 kb on - strand, within Atu0706 at 706.328 kb on - strand, within Atu0706 at 706.331 kb on + strand, within Atu0706 at 706.331 kb on + strand, within Atu0706 at 706.331 kb on + strand, within Atu0706 at 706.339 kb on - strand, within Atu0706 at 706.339 kb on - strand, within Atu0706 at 706.414 kb on - strand, within Atu0706 at 706.443 kb on + strand, within Atu0706 at 706.443 kb on + strand, within Atu0706 at 706.462 kb on - strand, within Atu0706 at 706.520 kb on + strand, within Atu0706 at 706.662 kb on - strand, within Atu0706 at 706.799 kb on - strand at 706.983 kb on - strand at 707.116 kb on - strand at 707.116 kb on - strand at 707.189 kb on + strand at 707.224 kb on - strand at 707.245 kb on - strand at 707.326 kb on + strand, within Atu0707 at 707.407 kb on + strand, within Atu0707 at 707.509 kb on + strand, within Atu0707 at 707.517 kb on - strand, within Atu0707 at 707.592 kb on - strand, within Atu0707 at 707.618 kb on + strand, within Atu0707 at 707.659 kb on + strand, within Atu0707 at 707.660 kb on + strand, within Atu0707 at 707.680 kb on + strand, within Atu0707 at 707.772 kb on + strand at 707.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-ascorbate (C) remove 705,125 - +0.1 705,131 - +0.8 705,151 + -0.9 705,294 + Atu0705 0.18 +0.3 705,441 - Atu0705 0.37 -0.5 705,499 + Atu0705 0.45 -0.8 705,507 - Atu0705 0.46 +1.0 705,527 - Atu0705 0.48 +0.4 705,529 + Atu0705 0.49 -1.1 705,569 + Atu0705 0.54 -0.4 705,598 - Atu0705 0.57 +0.6 705,670 + Atu0705 0.67 -0.1 705,678 - Atu0705 0.68 -0.1 705,772 + Atu0705 0.80 -0.2 705,775 - Atu0705 0.80 +0.1 705,828 + Atu0705 0.87 +0.6 705,886 + +1.5 705,886 + +0.9 705,888 - +0.9 705,894 - -0.4 705,894 - -0.6 705,894 - +0.8 706,008 + +0.1 706,016 - +0.6 706,086 - +0.2 706,214 - Atu0706 0.21 -0.7 706,292 + Atu0706 0.30 -0.2 706,310 - Atu0706 0.33 +1.5 706,328 - Atu0706 0.35 -0.7 706,331 + Atu0706 0.35 -1.1 706,331 + Atu0706 0.35 -0.7 706,331 + Atu0706 0.35 -0.4 706,339 - Atu0706 0.36 -0.1 706,339 - Atu0706 0.36 +0.1 706,414 - Atu0706 0.45 +1.1 706,443 + Atu0706 0.48 -0.1 706,443 + Atu0706 0.48 +0.1 706,462 - Atu0706 0.51 -0.2 706,520 + Atu0706 0.58 +0.1 706,662 - Atu0706 0.75 -0.2 706,799 - +0.6 706,983 - +0.3 707,116 - -0.2 707,116 - +1.4 707,189 + +0.3 707,224 - +0.7 707,245 - -0.4 707,326 + Atu0707 0.17 +0.8 707,407 + Atu0707 0.31 +0.2 707,509 + Atu0707 0.48 -0.3 707,517 - Atu0707 0.49 -0.2 707,592 - Atu0707 0.61 +0.5 707,618 + Atu0707 0.66 -0.3 707,659 + Atu0707 0.72 -0.2 707,660 + Atu0707 0.72 -0.3 707,680 + Atu0707 0.76 -1.8 707,772 + +0.0 707,785 - +0.1
Or see this region's nucleotide sequence