Strain Fitness in Agrobacterium fabrum C58 around Atu0667

Experiment: L-ascorbate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0666 and Atu0667 are separated by 15 nucleotidesAtu0667 and Atu0668 overlap by 4 nucleotidesAtu0668 and Atu0669 are separated by 259 nucleotides Atu0666: Atu0666 - glycolate oxidase subunit, at 661,873 to 663,075 Atu0666 Atu0667: Atu0667 - glycolate oxidase iron-sulfur subunit, at 663,091 to 664,392 Atu0667 Atu0668: Atu0668 - hypothetical protein, at 664,389 to 665,048 Atu0668 Atu0669: Atu0669 - hypothetical protein, at 665,308 to 666,084 Atu0669 Position (kb) 663 664 665Strain fitness (log2 ratio) -1 0 1 2 3at 662.239 kb on + strand, within Atu0666at 662.247 kb on - strand, within Atu0666at 662.583 kb on + strand, within Atu0666at 662.594 kb on - strand, within Atu0666at 662.712 kb on + strand, within Atu0666at 662.723 kb on + strand, within Atu0666at 662.731 kb on - strand, within Atu0666at 662.763 kb on - strand, within Atu0666at 662.763 kb on - strand, within Atu0666at 662.894 kb on + strand, within Atu0666at 662.934 kb on - strand, within Atu0666at 663.011 kb on + strandat 663.081 kb on + strandat 663.081 kb on + strandat 663.081 kb on + strandat 663.081 kb on + strandat 663.081 kb on + strandat 663.089 kb on - strandat 663.089 kb on - strandat 663.089 kb on - strandat 663.107 kb on + strandat 663.193 kb on + strandat 663.208 kb on - strandat 663.228 kb on - strand, within Atu0667at 663.250 kb on - strand, within Atu0667at 663.310 kb on - strand, within Atu0667at 663.321 kb on + strand, within Atu0667at 663.323 kb on + strand, within Atu0667at 663.346 kb on - strand, within Atu0667at 663.485 kb on - strand, within Atu0667at 663.513 kb on + strand, within Atu0667at 663.526 kb on - strand, within Atu0667at 663.685 kb on + strand, within Atu0667at 663.693 kb on - strand, within Atu0667at 663.743 kb on + strand, within Atu0667at 663.761 kb on - strand, within Atu0667at 663.768 kb on - strand, within Atu0667at 663.786 kb on + strand, within Atu0667at 663.892 kb on + strand, within Atu0667at 663.990 kb on + strand, within Atu0667at 663.998 kb on - strand, within Atu0667at 663.998 kb on - strand, within Atu0667at 664.013 kb on + strand, within Atu0667at 664.013 kb on + strand, within Atu0667at 664.025 kb on + strand, within Atu0667at 664.045 kb on - strand, within Atu0667at 664.078 kb on - strand, within Atu0667at 664.092 kb on - strand, within Atu0667at 664.100 kb on - strand, within Atu0667at 664.154 kb on + strand, within Atu0667at 664.157 kb on + strand, within Atu0667at 664.183 kb on + strand, within Atu0667at 664.225 kb on - strand, within Atu0667at 664.299 kb on + strandat 664.299 kb on + strandat 664.299 kb on + strandat 664.307 kb on - strandat 664.322 kb on - strandat 664.342 kb on + strandat 664.489 kb on + strand, within Atu0668at 664.499 kb on - strand, within Atu0668at 664.507 kb on - strand, within Atu0668at 664.537 kb on + strand, within Atu0668at 664.654 kb on - strand, within Atu0668at 664.654 kb on - strand, within Atu0668at 664.715 kb on - strand, within Atu0668at 664.768 kb on + strand, within Atu0668at 664.784 kb on + strand, within Atu0668at 664.860 kb on - strand, within Atu0668at 665.010 kb on + strandat 665.146 kb on + strandat 665.177 kb on + strandat 665.255 kb on + strandat 665.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-ascorbate (C)
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662,239 + Atu0666 0.30 +1.2
662,247 - Atu0666 0.31 +1.7
662,583 + Atu0666 0.59 +1.5
662,594 - Atu0666 0.60 -0.7
662,712 + Atu0666 0.70 +1.6
662,723 + Atu0666 0.71 +1.5
662,731 - Atu0666 0.71 +1.6
662,763 - Atu0666 0.74 +1.6
662,763 - Atu0666 0.74 +1.8
662,894 + Atu0666 0.85 +1.5
662,934 - Atu0666 0.88 +2.6
663,011 + +0.4
663,081 + +0.5
663,081 + +0.9
663,081 + +0.8
663,081 + -0.2
663,081 + +0.9
663,089 - +1.4
663,089 - +1.1
663,089 - +1.3
663,107 + +0.9
663,193 + +0.1
663,208 - +1.5
663,228 - Atu0667 0.11 +1.3
663,250 - Atu0667 0.12 +1.7
663,310 - Atu0667 0.17 +1.5
663,321 + Atu0667 0.18 +2.8
663,323 + Atu0667 0.18 +1.7
663,346 - Atu0667 0.20 +1.8
663,485 - Atu0667 0.30 +0.9
663,513 + Atu0667 0.32 +0.6
663,526 - Atu0667 0.33 +1.4
663,685 + Atu0667 0.46 +1.4
663,693 - Atu0667 0.46 +1.0
663,743 + Atu0667 0.50 +1.7
663,761 - Atu0667 0.51 +1.2
663,768 - Atu0667 0.52 +1.3
663,786 + Atu0667 0.53 +0.7
663,892 + Atu0667 0.62 +1.4
663,990 + Atu0667 0.69 +1.6
663,998 - Atu0667 0.70 +1.1
663,998 - Atu0667 0.70 +1.9
664,013 + Atu0667 0.71 +1.4
664,013 + Atu0667 0.71 +1.2
664,025 + Atu0667 0.72 +1.5
664,045 - Atu0667 0.73 +1.5
664,078 - Atu0667 0.76 +1.8
664,092 - Atu0667 0.77 +2.7
664,100 - Atu0667 0.77 +0.7
664,154 + Atu0667 0.82 +1.6
664,157 + Atu0667 0.82 +1.7
664,183 + Atu0667 0.84 +1.5
664,225 - Atu0667 0.87 +1.7
664,299 + +1.3
664,299 + +1.8
664,299 + +1.7
664,307 - +2.1
664,322 - +1.6
664,342 + +1.5
664,489 + Atu0668 0.15 +0.1
664,499 - Atu0668 0.17 -0.5
664,507 - Atu0668 0.18 -0.2
664,537 + Atu0668 0.22 +0.4
664,654 - Atu0668 0.40 -0.0
664,654 - Atu0668 0.40 -0.0
664,715 - Atu0668 0.49 -0.5
664,768 + Atu0668 0.57 -0.7
664,784 + Atu0668 0.60 +1.0
664,860 - Atu0668 0.71 -0.0
665,010 + +0.1
665,146 + -0.7
665,177 + -1.4
665,255 + +0.6
665,324 - +0.2

Or see this region's nucleotide sequence