Experiment: L-ascorbate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0349 and Atu8118 are separated by 114 nucleotides Atu8118 and Atu0351 are separated by 142 nucleotides Atu0351 and Atu0352 are separated by 16 nucleotides Atu0352 and Atu0353 are separated by 43 nucleotides
Atu0349: Atu0349 - tryptophan-tRNA ligase, at 344,570 to 345,634
Atu0349
Atu8118: Atu8118 - putative universal stress protein, at 345,749 to 346,240
Atu8118
Atu0351: Atu0351 - hypothetical protein, at 346,383 to 346,946
Atu0351
Atu0352: Atu0352 - hypothetical protein, at 346,963 to 347,631
Atu0352
Atu0353: Atu0353 - acetyltransferase, at 347,675 to 348,169
Atu0353
Position (kb) 346
347 Strain fitness (log2 ratio) -1
0
1
2 at 345.631 kb on + strand at 345.641 kb on - strand at 345.665 kb on + strand at 345.884 kb on - strand, within Atu8118 at 345.886 kb on + strand, within Atu8118 at 345.886 kb on + strand, within Atu8118 at 345.894 kb on - strand, within Atu8118 at 345.979 kb on + strand, within Atu8118 at 345.979 kb on + strand, within Atu8118 at 345.987 kb on - strand, within Atu8118 at 345.990 kb on + strand, within Atu8118 at 345.998 kb on - strand, within Atu8118 at 347.601 kb on - strand at 347.622 kb on - strand at 347.622 kb on - strand at 347.726 kb on - strand, within Atu0353 at 347.770 kb on + strand, within Atu0353 at 347.843 kb on + strand, within Atu0353 at 347.927 kb on + strand, within Atu0353
Per-strain Table
Position Strand Gene LocusTag Fraction L-ascorbate (C) remove 345,631 + +0.2 345,641 - +0.4 345,665 + +1.0 345,884 - Atu8118 0.27 +1.5 345,886 + Atu8118 0.28 -0.0 345,886 + Atu8118 0.28 +1.6 345,894 - Atu8118 0.29 +2.0 345,979 + Atu8118 0.47 +1.1 345,979 + Atu8118 0.47 +1.0 345,987 - Atu8118 0.48 +1.0 345,990 + Atu8118 0.49 +1.3 345,998 - Atu8118 0.51 +1.3 347,601 - -0.9 347,622 - +1.5 347,622 - -0.2 347,726 - Atu0353 0.10 -0.9 347,770 + Atu0353 0.19 +0.0 347,843 + Atu0353 0.34 -0.4 347,927 + Atu0353 0.51 -0.5
Or see this region's nucleotide sequence