Strain Fitness in Pseudomonas sp. RS175 around PFR28_04346

Experiment: L-Leucine (C) 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_04345 and PFR28_04346 are separated by 17 nucleotidesPFR28_04346 and PFR28_04347 are separated by 357 nucleotidesPFR28_04347 and PFR28_04348 overlap by 20 nucleotides PFR28_04345: PFR28_04345 - Polyphosphate kinase, at 4,953,754 to 4,955,976 _04345 PFR28_04346: PFR28_04346 - Delta-aminolevulinic acid dehydratase, at 4,955,994 to 4,957,007 _04346 PFR28_04347: PFR28_04347 - hypothetical protein, at 4,957,365 to 4,957,988 _04347 PFR28_04348: PFR28_04348 - hypothetical protein, at 4,957,969 to 4,959,204 _04348 Position (kb) 4955 4956 4957 4958Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4954.997 kb on + strand, within PFR28_04345at 4954.998 kb on - strand, within PFR28_04345at 4955.154 kb on - strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.738 kb on + strand, within PFR28_04345at 4955.739 kb on - strand, within PFR28_04345at 4955.739 kb on - strand, within PFR28_04345at 4955.739 kb on - strand, within PFR28_04345at 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.808 kb on - strandat 4955.808 kb on - strandat 4955.808 kb on - strandat 4955.808 kb on - strandat 4955.808 kb on - strandat 4955.808 kb on - strandat 4955.995 kb on + strandat 4955.995 kb on + strandat 4955.996 kb on - strandat 4955.996 kb on - strandat 4956.009 kb on + strandat 4956.010 kb on - strandat 4957.050 kb on - strandat 4957.050 kb on - strandat 4957.050 kb on - strandat 4957.050 kb on - strandat 4957.050 kb on - strandat 4957.050 kb on - strandat 4957.050 kb on - strandat 4957.050 kb on - strandat 4957.050 kb on - strandat 4957.052 kb on - strandat 4957.052 kb on - strandat 4957.052 kb on - strandat 4957.052 kb on - strandat 4957.052 kb on - strandat 4957.052 kb on - strandat 4957.063 kb on - strandat 4957.063 kb on - strandat 4957.076 kb on + strandat 4957.076 kb on + strandat 4957.076 kb on + strandat 4957.076 kb on + strandat 4957.077 kb on - strandat 4957.077 kb on - strandat 4957.263 kb on + strandat 4957.263 kb on + strandat 4957.264 kb on - strandat 4957.274 kb on + strandat 4957.275 kb on - strandat 4957.306 kb on - strandat 4957.331 kb on + strandat 4957.332 kb on - strandat 4957.332 kb on - strandat 4957.473 kb on + strand, within PFR28_04347at 4957.473 kb on + strand, within PFR28_04347at 4957.473 kb on + strand, within PFR28_04347at 4957.473 kb on + strand, within PFR28_04347at 4957.474 kb on - strand, within PFR28_04347at 4957.474 kb on - strand, within PFR28_04347at 4957.518 kb on + strand, within PFR28_04347at 4957.518 kb on + strand, within PFR28_04347at 4957.518 kb on + strand, within PFR28_04347at 4957.519 kb on - strand, within PFR28_04347at 4957.534 kb on + strand, within PFR28_04347at 4957.534 kb on + strand, within PFR28_04347at 4957.534 kb on + strand, within PFR28_04347at 4957.534 kb on + strand, within PFR28_04347at 4957.534 kb on + strand, within PFR28_04347at 4957.534 kb on + strand, within PFR28_04347at 4957.534 kb on + strand, within PFR28_04347at 4957.534 kb on + strand, within PFR28_04347at 4957.535 kb on - strand, within PFR28_04347at 4957.535 kb on - strand, within PFR28_04347at 4957.535 kb on - strand, within PFR28_04347at 4957.535 kb on - strand, within PFR28_04347at 4957.535 kb on - strand, within PFR28_04347at 4957.539 kb on + strand, within PFR28_04347at 4957.539 kb on + strand, within PFR28_04347at 4957.539 kb on + strand, within PFR28_04347at 4957.539 kb on + strand, within PFR28_04347at 4957.539 kb on + strand, within PFR28_04347at 4957.539 kb on + strand, within PFR28_04347at 4957.539 kb on + strand, within PFR28_04347at 4957.539 kb on + strand, within PFR28_04347at 4957.540 kb on - strand, within PFR28_04347at 4957.540 kb on - strand, within PFR28_04347at 4957.540 kb on - strand, within PFR28_04347at 4957.540 kb on - strand, within PFR28_04347at 4957.540 kb on - strand, within PFR28_04347at 4957.570 kb on + strand, within PFR28_04347at 4957.570 kb on + strand, within PFR28_04347at 4957.571 kb on - strand, within PFR28_04347at 4957.571 kb on - strand, within PFR28_04347at 4957.680 kb on - strand, within PFR28_04347at 4957.728 kb on + strand, within PFR28_04347at 4957.788 kb on + strand, within PFR28_04347at 4957.788 kb on + strand, within PFR28_04347at 4957.836 kb on + strand, within PFR28_04347at 4957.836 kb on + strand, within PFR28_04347at 4957.837 kb on - strand, within PFR28_04347at 4957.837 kb on - strand, within PFR28_04347at 4957.849 kb on + strand, within PFR28_04347at 4957.849 kb on + strand, within PFR28_04347at 4957.849 kb on + strand, within PFR28_04347at 4957.850 kb on - strand, within PFR28_04347at 4957.850 kb on - strand, within PFR28_04347at 4957.899 kb on - strand, within PFR28_04347at 4957.970 kb on + strandat 4957.970 kb on + strandat 4957.971 kb on - strandat 4957.971 kb on - strandat 4957.971 kb on - strandat 4958.006 kb on + strandat 4958.006 kb on + strandat 4958.007 kb on - strandat 4958.007 kb on - strandat 4958.007 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C) 10 mM
remove
4,954,997 + PFR28_04345 0.56 -4.2
4,954,998 - PFR28_04345 0.56 -2.7
4,955,154 - PFR28_04345 0.63 -1.7
4,955,221 + PFR28_04345 0.66 -1.0
4,955,221 + PFR28_04345 0.66 -3.9
4,955,221 + PFR28_04345 0.66 -3.0
4,955,221 + PFR28_04345 0.66 -4.3
4,955,221 + PFR28_04345 0.66 -2.9
4,955,221 + PFR28_04345 0.66 -1.7
4,955,221 + PFR28_04345 0.66 -3.8
4,955,221 + PFR28_04345 0.66 -3.5
4,955,221 + PFR28_04345 0.66 -3.1
4,955,221 + PFR28_04345 0.66 -1.6
4,955,221 + PFR28_04345 0.66 -0.6
4,955,222 - PFR28_04345 0.66 -3.5
4,955,222 - PFR28_04345 0.66 -1.0
4,955,222 - PFR28_04345 0.66 -4.6
4,955,222 - PFR28_04345 0.66 -3.6
4,955,222 - PFR28_04345 0.66 -2.5
4,955,222 - PFR28_04345 0.66 -3.0
4,955,222 - PFR28_04345 0.66 -1.3
4,955,222 - PFR28_04345 0.66 -4.0
4,955,222 - PFR28_04345 0.66 -2.0
4,955,225 + PFR28_04345 0.66 -3.5
4,955,225 + PFR28_04345 0.66 -2.4
4,955,225 + PFR28_04345 0.66 -0.0
4,955,225 + PFR28_04345 0.66 -3.2
4,955,225 + PFR28_04345 0.66 -0.8
4,955,225 + PFR28_04345 0.66 -3.5
4,955,225 + PFR28_04345 0.66 -3.2
4,955,225 + PFR28_04345 0.66 -4.3
4,955,225 + PFR28_04345 0.66 -2.0
4,955,225 + PFR28_04345 0.66 -3.4
4,955,225 + PFR28_04345 0.66 -4.3
4,955,225 + PFR28_04345 0.66 -2.9
4,955,225 + PFR28_04345 0.66 -3.5
4,955,225 + PFR28_04345 0.66 -3.0
4,955,225 + PFR28_04345 0.66 -3.3
4,955,225 + PFR28_04345 0.66 -2.9
4,955,226 - PFR28_04345 0.66 -2.9
4,955,226 - PFR28_04345 0.66 -4.7
4,955,226 - PFR28_04345 0.66 -4.1
4,955,226 - PFR28_04345 0.66 -2.2
4,955,226 - PFR28_04345 0.66 -2.4
4,955,226 - PFR28_04345 0.66 -2.9
4,955,226 - PFR28_04345 0.66 -3.2
4,955,226 - PFR28_04345 0.66 -3.0
4,955,226 - PFR28_04345 0.66 -2.3
4,955,226 - PFR28_04345 0.66 -4.2
4,955,738 + PFR28_04345 0.89 -4.6
4,955,739 - PFR28_04345 0.89 -2.5
4,955,739 - PFR28_04345 0.89 -2.2
4,955,739 - PFR28_04345 0.89 -4.3
4,955,807 + -3.5
4,955,807 + -1.9
4,955,807 + -3.0
4,955,807 + -2.3
4,955,807 + -2.8
4,955,807 + -5.3
4,955,807 + -3.9
4,955,807 + -0.6
4,955,807 + -2.7
4,955,807 + -1.6
4,955,807 + -4.2
4,955,807 + -3.5
4,955,808 - -4.7
4,955,808 - -4.6
4,955,808 - -3.0
4,955,808 - -2.4
4,955,808 - -3.9
4,955,808 - -2.8
4,955,995 + +0.0
4,955,995 + -1.3
4,955,996 - +0.5
4,955,996 - -1.0
4,956,009 + +0.3
4,956,010 - -0.2
4,957,050 - +0.5
4,957,050 - +1.1
4,957,050 - +1.0
4,957,050 - -1.8
4,957,050 - +0.1
4,957,050 - +0.2
4,957,050 - +1.0
4,957,050 - +1.0
4,957,050 - +0.0
4,957,052 - -0.7
4,957,052 - +1.5
4,957,052 - -0.2
4,957,052 - +0.7
4,957,052 - -1.4
4,957,052 - -0.8
4,957,063 - -0.3
4,957,063 - +0.6
4,957,076 + +0.5
4,957,076 + +3.0
4,957,076 + -0.5
4,957,076 + -0.2
4,957,077 - +0.2
4,957,077 - -1.0
4,957,263 + +0.7
4,957,263 + -0.4
4,957,264 - +0.8
4,957,274 + +0.4
4,957,275 - +1.0
4,957,306 - +0.4
4,957,331 + +0.7
4,957,332 - +0.4
4,957,332 - -0.1
4,957,473 + PFR28_04347 0.17 +1.2
4,957,473 + PFR28_04347 0.17 +0.7
4,957,473 + PFR28_04347 0.17 +0.4
4,957,473 + PFR28_04347 0.17 -0.1
4,957,474 - PFR28_04347 0.17 +0.2
4,957,474 - PFR28_04347 0.17 +1.1
4,957,518 + PFR28_04347 0.25 -0.1
4,957,518 + PFR28_04347 0.25 +1.0
4,957,518 + PFR28_04347 0.25 +0.6
4,957,519 - PFR28_04347 0.25 +0.2
4,957,534 + PFR28_04347 0.27 +0.4
4,957,534 + PFR28_04347 0.27 +0.9
4,957,534 + PFR28_04347 0.27 +0.0
4,957,534 + PFR28_04347 0.27 +1.2
4,957,534 + PFR28_04347 0.27 +0.7
4,957,534 + PFR28_04347 0.27 -0.2
4,957,534 + PFR28_04347 0.27 +0.2
4,957,534 + PFR28_04347 0.27 +0.7
4,957,535 - PFR28_04347 0.27 +0.8
4,957,535 - PFR28_04347 0.27 +0.9
4,957,535 - PFR28_04347 0.27 +0.7
4,957,535 - PFR28_04347 0.27 -1.0
4,957,535 - PFR28_04347 0.27 -0.0
4,957,539 + PFR28_04347 0.28 -0.9
4,957,539 + PFR28_04347 0.28 +0.8
4,957,539 + PFR28_04347 0.28 +0.6
4,957,539 + PFR28_04347 0.28 +1.3
4,957,539 + PFR28_04347 0.28 -0.1
4,957,539 + PFR28_04347 0.28 +0.2
4,957,539 + PFR28_04347 0.28 -0.2
4,957,539 + PFR28_04347 0.28 +1.2
4,957,540 - PFR28_04347 0.28 +1.4
4,957,540 - PFR28_04347 0.28 +0.3
4,957,540 - PFR28_04347 0.28 +0.2
4,957,540 - PFR28_04347 0.28 +0.4
4,957,540 - PFR28_04347 0.28 -0.7
4,957,570 + PFR28_04347 0.33 -0.2
4,957,570 + PFR28_04347 0.33 +0.7
4,957,571 - PFR28_04347 0.33 -0.8
4,957,571 - PFR28_04347 0.33 +0.0
4,957,680 - PFR28_04347 0.50 +0.2
4,957,728 + PFR28_04347 0.58 +0.6
4,957,788 + PFR28_04347 0.68 +1.1
4,957,788 + PFR28_04347 0.68 +0.2
4,957,836 + PFR28_04347 0.75 +0.4
4,957,836 + PFR28_04347 0.75 +0.6
4,957,837 - PFR28_04347 0.76 +0.4
4,957,837 - PFR28_04347 0.76 +0.8
4,957,849 + PFR28_04347 0.78 -0.1
4,957,849 + PFR28_04347 0.78 +1.0
4,957,849 + PFR28_04347 0.78 +1.1
4,957,850 - PFR28_04347 0.78 -0.2
4,957,850 - PFR28_04347 0.78 +1.1
4,957,899 - PFR28_04347 0.86 +1.0
4,957,970 + -2.3
4,957,970 + -0.3
4,957,971 - +0.8
4,957,971 - -3.1
4,957,971 - +1.4
4,958,006 + -0.3
4,958,006 + -2.3
4,958,007 - +0.1
4,958,007 - -0.1
4,958,007 - +1.2

Or see this region's nucleotide sequence