Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1100

Experiment: m.b. Tetracycline 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Tetracycline 0.06 mg/ml
1,259,805	-		Echvi_1099	0.38	-0.4
1,259,805	-		Echvi_1099	0.38	-0.4
1,259,857	+		Echvi_1099	0.43	-0.1
1,259,857	+		Echvi_1099	0.43	-0.2
1,259,858	-		Echvi_1099	0.43	+0.7
1,259,858	-		Echvi_1099	0.43	+0.1
1,259,861	-		Echvi_1099	0.43	-0.5
1,259,874	+		Echvi_1099	0.44	-0.0
1,259,875	-		Echvi_1099	0.44	+0.3
1,259,875	-		Echvi_1099	0.44	+2.3
1,259,895	+		Echvi_1099	0.46	+0.4
1,259,895	+		Echvi_1099	0.46	-0.0
1,259,895	+		Echvi_1099	0.46	-1.9
1,259,937	-		Echvi_1099	0.49	-2.0
1,260,016	+		Echvi_1099	0.55	+0.7
1,260,017	-		Echvi_1099	0.55	-0.7
1,260,029	+		Echvi_1099	0.56	+0.3
1,260,030	-		Echvi_1099	0.56	+1.0
1,260,030	-		Echvi_1099	0.56	-1.6
1,260,031	+		Echvi_1099	0.56	+1.8
1,260,032	-		Echvi_1099	0.56	+2.0
1,260,042	+		Echvi_1099	0.57	-0.2
1,260,043	-		Echvi_1099	0.57	-0.0
1,260,048	-		Echvi_1099	0.58	+0.7
1,260,048	-		Echvi_1099	0.58	+0.2
1,260,050	-		Echvi_1099	0.58	-0.8
1,260,073	-		Echvi_1099	0.60	-0.4
1,260,073	-		Echvi_1099	0.60	-0.6
1,260,073	-		Echvi_1099	0.60	-1.3
1,260,073	-		Echvi_1099	0.60	-1.5
1,260,107	+		Echvi_1099	0.62	-0.4
1,260,109	+		Echvi_1099	0.62	-0.3
1,260,121	-		Echvi_1099	0.63	+0.5
1,260,121	-		Echvi_1099	0.63	+0.7
1,260,224	+		Echvi_1099	0.71	+0.2
1,260,229	+		Echvi_1099	0.72	-0.1
1,260,229	+		Echvi_1099	0.72	-0.1
1,260,229	+		Echvi_1099	0.72	-0.4
1,260,229	+		Echvi_1099	0.72	-0.5
1,260,353	+		Echvi_1099	0.82	-0.4
1,260,354	-		Echvi_1099	0.82	-0.5
1,260,377	+		Echvi_1099	0.83	+1.2
1,260,378	-		Echvi_1099	0.83	+0.3
1,260,378	-		Echvi_1099	0.83	+0.5
1,260,381	+		Echvi_1099	0.84	-0.1
1,260,398	+		Echvi_1099	0.85	+0.7
1,260,399	-		Echvi_1099	0.85	-0.6
1,260,399	-		Echvi_1099	0.85	-1.9
1,260,399	-		Echvi_1099	0.85	-0.2
1,260,400	+		Echvi_1099	0.85	-0.6
1,260,401	-		Echvi_1099	0.85	+0.4
1,260,401	-		Echvi_1099	0.85	-1.0
1,260,409	+		Echvi_1099	0.86	-1.0
1,260,409	+		Echvi_1099	0.86	+0.3
1,260,410	-		Echvi_1099	0.86	+0.0
1,260,502	-				-0.8
1,260,515	+				+0.9
1,260,533	+				-0.3
1,260,555	+				+0.8
1,260,575	-				-0.3
1,260,625	-				-1.2
1,260,648	+				-1.0
1,260,657	+				-0.8
1,260,677	+				-1.1
1,260,677	+				+0.4
1,260,678	-				-0.0
1,260,678	-				+0.3
1,260,701	+				-0.4
1,260,742	+				+0.2
1,260,743	-				+0.2
1,260,754	-				+2.0
1,260,754	-				+0.9
1,260,773	+				+0.2
1,260,788	+				-0.5
1,260,932	-		Echvi_1100	0.22	-0.9
1,260,952	+		Echvi_1100	0.25	+0.2
1,260,952	+		Echvi_1100	0.25	-0.1
1,260,953	-		Echvi_1100	0.25	-0.4
1,260,953	-		Echvi_1100	0.25	-0.3
1,260,953	-		Echvi_1100	0.25	-1.7
1,260,990	+		Echvi_1100	0.31	-0.8
1,260,990	+		Echvi_1100	0.31	+0.4
1,260,991	-		Echvi_1100	0.31	-0.5
1,260,991	-		Echvi_1100	0.31	-0.4
1,260,991	-		Echvi_1100	0.31	-0.3
1,260,993	+		Echvi_1100	0.31	-0.8
1,260,993	+		Echvi_1100	0.31	+0.9
1,260,993	+		Echvi_1100	0.31	+0.4
1,261,011	+		Echvi_1100	0.33	+0.9
1,261,065	+		Echvi_1100	0.41	-1.0
1,261,083	-		Echvi_1100	0.44	+2.6
1,261,105	+		Echvi_1100	0.47	+0.6
1,261,105	+		Echvi_1100	0.47	-0.3
1,261,106	-		Echvi_1100	0.47	-0.7
1,261,106	-		Echvi_1100	0.47	+0.2
1,261,123	+		Echvi_1100	0.49	+0.3
1,261,123	+		Echvi_1100	0.49	-0.4
1,261,124	-		Echvi_1100	0.49	-0.9
1,261,196	+		Echvi_1100	0.59	-0.5
1,261,197	-		Echvi_1100	0.60	-0.7
1,261,197	-		Echvi_1100	0.60	-1.1
1,261,297	+		Echvi_1100	0.74	-0.7
1,261,297	+		Echvi_1100	0.74	+0.5
1,261,297	+		Echvi_1100	0.74	-1.1
1,261,297	+		Echvi_1100	0.74	-0.2
1,261,314	+		Echvi_1100	0.76	+0.7
1,261,319	+		Echvi_1100	0.77	+0.2
1,261,351	-		Echvi_1100	0.81	-0.0
1,261,386	+		Echvi_1100	0.86	-1.1
1,261,386	+		Echvi_1100	0.86	-0.1
1,261,386	+		Echvi_1100	0.86	-0.3
1,261,386	+		Echvi_1100	0.86	-1.6
1,261,386	+		Echvi_1100	0.86	+0.8
1,261,386	+		Echvi_1100	0.86	-0.2
1,261,386	+		Echvi_1100	0.86	-1.8
1,261,387	-		Echvi_1100	0.86	-1.5
1,261,387	-		Echvi_1100	0.86	-1.2
1,261,387	-		Echvi_1100	0.86	+0.4
1,261,387	-		Echvi_1100	0.86	-0.3
1,261,400	-		Echvi_1100	0.88	-1.0
1,261,452	+				+0.6
1,261,459	-				-0.0
1,261,459	-				-0.8
1,261,461	-				-0.2
1,261,632	+				+1.3
1,261,642	+				-0.7
1,261,642	+				-1.2
1,261,643	-				+0.1
1,261,648	-				-0.3
1,261,653	+				-0.9
1,261,653	+				-0.7
1,261,653	+				+0.8
1,261,654	-				-0.0
1,261,697	+				+0.1
1,261,698	-				+1.7
1,261,704	+				+0.4
1,261,709	-				-0.1
1,261,732	+				+0.3
1,261,732	+				-0.8
1,261,737	+		Echvi_1101	0.10	+1.1
1,261,737	+		Echvi_1101	0.10	-1.3
1,261,875	+		Echvi_1101	0.39	+0.8
1,261,887	-		Echvi_1101	0.41	+0.0
1,261,931	+		Echvi_1101	0.50	-0.9
1,261,931	+		Echvi_1101	0.50	-1.2
1,261,932	-		Echvi_1101	0.51	+1.6
1,261,946	+		Echvi_1101	0.53	-1.0
1,261,946	+		Echvi_1101	0.53	-0.2
1,261,946	+		Echvi_1101	0.53	-0.6
1,261,947	-		Echvi_1101	0.54	+1.0
1,261,948	+		Echvi_1101	0.54	-0.6
1,261,948	+		Echvi_1101	0.54	-0.0
1,261,949	-		Echvi_1101	0.54	+0.1
1,261,961	+		Echvi_1101	0.57	-2.0
1,261,961	+		Echvi_1101	0.57	-1.7
1,261,962	-		Echvi_1101	0.57	-1.2
1,261,992	+		Echvi_1101	0.63	+0.6
1,261,992	+		Echvi_1101	0.63	-1.1
1,261,993	-		Echvi_1101	0.63	+0.3
1,262,040	+		Echvi_1101	0.73	-0.0
1,262,041	-		Echvi_1101	0.73	+0.1
1,262,041	-		Echvi_1101	0.73	+0.1
1,262,041	-		Echvi_1101	0.73	+1.8
1,262,041	-		Echvi_1101	0.73	+0.8
1,262,163	+				+1.7
1,262,168	+				-0.1
1,262,173	+				+0.3
1,262,173	+				+0.6
1,262,173	+				-0.1
1,262,173	+				-1.1
1,262,173	+				+0.3
1,262,173	+				-0.5
1,262,173	+				+1.1
1,262,173	+				-1.2
1,262,173	+				-1.2
1,262,173	+				+1.3
1,262,173	+				-1.0
1,262,173	+				+0.8
1,262,173	+				+0.4
1,262,173	+				+3.7
1,262,173	+				-0.1
1,262,174	-				+0.2
1,262,174	-				-1.1
1,262,174	-				+0.8
1,262,174	-				-1.3
1,262,174	-				+3.2
1,262,174	-				-1.0
1,262,174	-				-0.0
1,262,174	-				-0.4
1,262,174	-				+0.1
1,262,174	-				-1.8
1,262,174	-				+0.1
1,262,174	-				+1.1
1,262,174	-				-0.0
1,262,174	-				-1.0
1,262,177	+				+0.3
1,262,184	+				-0.3
1,262,333	-		Echvi_1102	0.22	+0.4
1,262,346	-		Echvi_1102	0.24	+0.5
1,262,346	-		Echvi_1102	0.24	-0.2
1,262,346	-		Echvi_1102	0.24	+0.2
1,262,378	+		Echvi_1102	0.30	-0.0
1,262,381	+		Echvi_1102	0.30	-0.0
1,262,381	+		Echvi_1102	0.30	-0.3
1,262,381	+		Echvi_1102	0.30	+0.3
1,262,381	+		Echvi_1102	0.30	-0.3
1,262,381	+		Echvi_1102	0.30	-0.4
1,262,382	-		Echvi_1102	0.30	+1.4
1,262,382	-		Echvi_1102	0.30	-0.0
1,262,382	-		Echvi_1102	0.30	+1.6
1,262,383	+		Echvi_1102	0.31	-0.8
1,262,383	+		Echvi_1102	0.31	-1.0
1,262,384	-		Echvi_1102	0.31	-0.3
1,262,473	+		Echvi_1102	0.46	+0.3
1,262,474	-		Echvi_1102	0.47	-2.1
1,262,474	-		Echvi_1102	0.47	+2.0
1,262,474	-		Echvi_1102	0.47	+0.8
1,262,474	-		Echvi_1102	0.47	-0.6
1,262,474	-		Echvi_1102	0.47	-1.3
1,262,474	-				+0.4
1,262,477	+		Echvi_1102	0.47	-0.4
1,262,478	-		Echvi_1102	0.47	-0.2
1,262,478	-		Echvi_1102	0.47	-2.5
1,262,478	-		Echvi_1102	0.47	+0.5
1,262,478	-		Echvi_1102	0.47	-0.2
1,262,478	-		Echvi_1102	0.47	+0.4
1,262,478	-		Echvi_1102	0.47	+1.4
1,262,478	-		Echvi_1102	0.47	-0.7
1,262,479	+		Echvi_1102	0.47	-0.8
1,262,479	+		Echvi_1102	0.47	-0.2