Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0849

Experiment: m.b. Tetracycline 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0848 and Echvi_0849 are separated by 3 nucleotidesEchvi_0849 and Echvi_0850 overlap by 1 nucleotidesEchvi_0850 and Echvi_0851 are separated by 12 nucleotidesEchvi_0851 and Echvi_0852 are separated by 107 nucleotides Echvi_0848: Echvi_0848 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family, at 971,162 to 971,950 _0848 Echvi_0849: Echvi_0849 - probable S-adenosylmethionine-dependent methyltransferase, YraL family, at 971,954 to 972,640 _0849 Echvi_0850: Echvi_0850 - Pterin-4a-carbinolamine dehydratase, at 972,640 to 972,870 _0850 Echvi_0851: Echvi_0851 - Uncharacterized conserved protein, at 972,883 to 973,152 _0851 Echvi_0852: Echvi_0852 - Parvulin-like peptidyl-prolyl isomerase, at 973,260 to 975,368 _0852 Position (kb) 971 972 973Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 971.057 kb on + strandat 971.057 kb on + strandat 971.057 kb on + strandat 971.078 kb on + strandat 971.148 kb on - strandat 971.149 kb on + strandat 971.150 kb on - strandat 971.241 kb on + strand, within Echvi_0848at 971.316 kb on + strand, within Echvi_0848at 971.316 kb on + strand, within Echvi_0848at 971.316 kb on + strand, within Echvi_0848at 971.367 kb on + strand, within Echvi_0848at 971.368 kb on - strand, within Echvi_0848at 971.441 kb on + strand, within Echvi_0848at 971.441 kb on + strand, within Echvi_0848at 971.441 kb on + strand, within Echvi_0848at 971.445 kb on + strand, within Echvi_0848at 971.446 kb on - strand, within Echvi_0848at 971.472 kb on + strand, within Echvi_0848at 971.493 kb on - strand, within Echvi_0848at 971.493 kb on - strand, within Echvi_0848at 971.523 kb on - strand, within Echvi_0848at 971.543 kb on - strand, within Echvi_0848at 971.543 kb on - strand, within Echvi_0848at 971.584 kb on + strand, within Echvi_0848at 971.584 kb on + strand, within Echvi_0848at 971.587 kb on + strand, within Echvi_0848at 971.588 kb on - strand, within Echvi_0848at 971.598 kb on + strand, within Echvi_0848at 971.599 kb on - strand, within Echvi_0848at 971.599 kb on - strand, within Echvi_0848at 971.699 kb on + strand, within Echvi_0848at 971.700 kb on - strand, within Echvi_0848at 971.700 kb on - strand, within Echvi_0848at 971.710 kb on + strand, within Echvi_0848at 971.710 kb on + strand, within Echvi_0848at 971.710 kb on + strand, within Echvi_0848at 971.712 kb on + strand, within Echvi_0848at 971.712 kb on + strand, within Echvi_0848at 971.752 kb on + strand, within Echvi_0848at 971.821 kb on - strand, within Echvi_0848at 971.821 kb on - strand, within Echvi_0848at 971.821 kb on - strand, within Echvi_0848at 971.821 kb on - strand, within Echvi_0848at 971.852 kb on + strand, within Echvi_0848at 971.857 kb on + strand, within Echvi_0848at 971.931 kb on - strandat 971.956 kb on - strandat 971.975 kb on - strandat 971.979 kb on - strandat 971.998 kb on + strandat 971.999 kb on - strandat 971.999 kb on - strandat 972.007 kb on + strandat 972.008 kb on - strandat 972.009 kb on + strandat 972.009 kb on + strandat 972.009 kb on + strandat 972.009 kb on + strandat 972.012 kb on + strandat 972.012 kb on + strandat 972.054 kb on + strand, within Echvi_0849at 972.338 kb on + strand, within Echvi_0849at 972.344 kb on + strand, within Echvi_0849at 972.434 kb on + strand, within Echvi_0849at 972.457 kb on + strand, within Echvi_0849at 972.457 kb on + strand, within Echvi_0849at 972.462 kb on + strand, within Echvi_0849at 972.463 kb on - strand, within Echvi_0849at 972.560 kb on + strand, within Echvi_0849at 972.560 kb on + strand, within Echvi_0849at 972.574 kb on + strandat 972.577 kb on + strandat 972.641 kb on + strandat 972.641 kb on + strandat 972.642 kb on - strandat 972.642 kb on - strandat 972.693 kb on + strand, within Echvi_0850at 972.835 kb on + strand, within Echvi_0850at 972.843 kb on + strand, within Echvi_0850at 972.844 kb on - strand, within Echvi_0850at 972.844 kb on - strand, within Echvi_0850at 972.923 kb on + strand, within Echvi_0851at 972.924 kb on - strand, within Echvi_0851at 972.925 kb on + strand, within Echvi_0851at 972.925 kb on + strand, within Echvi_0851at 972.926 kb on - strand, within Echvi_0851at 972.926 kb on - strand, within Echvi_0851at 972.980 kb on + strand, within Echvi_0851at 972.980 kb on + strand, within Echvi_0851at 973.079 kb on + strand, within Echvi_0851at 973.079 kb on + strand, within Echvi_0851at 973.080 kb on - strand, within Echvi_0851at 973.131 kb on + strandat 973.134 kb on + strandat 973.156 kb on - strandat 973.156 kb on - strandat 973.156 kb on - strandat 973.166 kb on - strandat 973.202 kb on - strandat 973.258 kb on + strandat 973.258 kb on + strandat 973.258 kb on + strandat 973.259 kb on - strandat 973.259 kb on - strandat 973.261 kb on + strandat 973.272 kb on - strandat 973.272 kb on - strandat 973.273 kb on + strandat 973.279 kb on + strandat 973.279 kb on + strandat 973.279 kb on + strandat 973.279 kb on + strandat 973.287 kb on - strandat 973.322 kb on + strandat 973.322 kb on + strandat 973.322 kb on + strandat 973.322 kb on + strandat 973.322 kb on + strandat 973.323 kb on - strandat 973.323 kb on - strandat 973.324 kb on + strandat 973.324 kb on + strandat 973.324 kb on + strandat 973.324 kb on + strandat 973.325 kb on - strandat 973.325 kb on - strandat 973.325 kb on - strandat 973.331 kb on + strandat 973.331 kb on + strandat 973.332 kb on - strandat 973.353 kb on - strandat 973.383 kb on + strandat 973.434 kb on - strandat 973.446 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.06 mg/ml
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971,057 + -0.6
971,057 + -0.6
971,057 + -0.4
971,078 + -0.5
971,148 - -0.7
971,149 + +0.6
971,150 - -0.8
971,241 + Echvi_0848 0.10 -0.4
971,316 + Echvi_0848 0.20 +0.2
971,316 + Echvi_0848 0.20 +0.8
971,316 + Echvi_0848 0.20 +0.4
971,367 + Echvi_0848 0.26 -0.4
971,368 - Echvi_0848 0.26 -0.4
971,441 + Echvi_0848 0.35 +1.3
971,441 + Echvi_0848 0.35 -0.5
971,441 + Echvi_0848 0.35 +0.6
971,445 + Echvi_0848 0.36 +0.6
971,446 - Echvi_0848 0.36 -0.2
971,472 + Echvi_0848 0.39 -1.8
971,493 - Echvi_0848 0.42 -1.0
971,493 - Echvi_0848 0.42 +0.7
971,523 - Echvi_0848 0.46 -0.5
971,543 - Echvi_0848 0.48 -1.9
971,543 - Echvi_0848 0.48 -0.2
971,584 + Echvi_0848 0.53 -0.1
971,584 + Echvi_0848 0.53 -0.3
971,587 + Echvi_0848 0.54 +1.0
971,588 - Echvi_0848 0.54 +0.6
971,598 + Echvi_0848 0.55 -0.1
971,599 - Echvi_0848 0.55 -1.7
971,599 - Echvi_0848 0.55 -0.6
971,699 + Echvi_0848 0.68 -1.4
971,700 - Echvi_0848 0.68 -0.4
971,700 - Echvi_0848 0.68 -1.4
971,710 + Echvi_0848 0.69 +0.1
971,710 + Echvi_0848 0.69 +0.4
971,710 + Echvi_0848 0.69 +1.0
971,712 + Echvi_0848 0.70 -0.0
971,712 + Echvi_0848 0.70 -1.5
971,752 + Echvi_0848 0.75 -0.3
971,821 - Echvi_0848 0.84 +0.3
971,821 - Echvi_0848 0.84 -1.7
971,821 - Echvi_0848 0.84 -0.9
971,821 - Echvi_0848 0.84 -1.2
971,852 + Echvi_0848 0.87 -0.4
971,857 + Echvi_0848 0.88 +0.6
971,931 - +0.0
971,956 - -0.4
971,975 - -0.8
971,979 - -0.4
971,998 + -0.4
971,999 - -1.8
971,999 - -1.3
972,007 + +3.0
972,008 - -1.4
972,009 + -1.5
972,009 + -0.5
972,009 + -0.3
972,009 + -1.5
972,012 + -1.4
972,012 + +0.6
972,054 + Echvi_0849 0.15 -0.6
972,338 + Echvi_0849 0.56 -1.3
972,344 + Echvi_0849 0.57 -0.3
972,434 + Echvi_0849 0.70 +0.4
972,457 + Echvi_0849 0.73 +0.6
972,457 + Echvi_0849 0.73 -0.4
972,462 + Echvi_0849 0.74 -1.2
972,463 - Echvi_0849 0.74 -1.3
972,560 + Echvi_0849 0.88 -2.4
972,560 + Echvi_0849 0.88 -0.4
972,574 + +0.0
972,577 + -0.6
972,641 + -0.4
972,641 + -1.0
972,642 - -2.6
972,642 - -0.8
972,693 + Echvi_0850 0.23 -1.4
972,835 + Echvi_0850 0.84 -0.9
972,843 + Echvi_0850 0.88 -1.4
972,844 - Echvi_0850 0.88 -1.7
972,844 - Echvi_0850 0.88 +2.0
972,923 + Echvi_0851 0.15 -0.5
972,924 - Echvi_0851 0.15 -1.5
972,925 + Echvi_0851 0.16 +0.1
972,925 + Echvi_0851 0.16 -0.8
972,926 - Echvi_0851 0.16 -1.7
972,926 - Echvi_0851 0.16 -0.6
972,980 + Echvi_0851 0.36 -2.0
972,980 + Echvi_0851 0.36 -1.0
973,079 + Echvi_0851 0.73 +0.4
973,079 + Echvi_0851 0.73 -0.1
973,080 - Echvi_0851 0.73 -0.8
973,131 + +1.7
973,134 + +0.8
973,156 - -1.6
973,156 - -0.5
973,156 - -2.8
973,166 - -0.6
973,202 - -1.2
973,258 + +0.4
973,258 + -1.0
973,258 + +0.4
973,259 - -0.1
973,259 - -0.2
973,261 + -0.6
973,272 - -0.7
973,272 - +1.1
973,273 + -0.5
973,279 + +2.0
973,279 + +0.6
973,279 + -0.0
973,279 + -0.4
973,287 - +0.6
973,322 + -0.1
973,322 + -0.7
973,322 + -1.0
973,322 + -0.3
973,322 + +0.8
973,323 - -0.8
973,323 - -0.2
973,324 + -1.9
973,324 + +0.1
973,324 + +0.1
973,324 + -0.3
973,325 - -1.1
973,325 - -0.0
973,325 - -1.6
973,331 + -0.6
973,331 + -1.8
973,332 - -0.4
973,353 - -1.0
973,383 + -0.6
973,434 - +0.8
973,446 - +0.4

Or see this region's nucleotide sequence