Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0478

Experiment: m.b. Tetracycline 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0477 and Echvi_0478 are separated by 101 nucleotidesEchvi_0478 and Echvi_0479 are separated by 309 nucleotides Echvi_0477: Echvi_0477 - Exopolyphosphatase, at 523,306 to 524,853 _0477 Echvi_0478: Echvi_0478 - 6-phosphogluconate dehydrogenase, decarboxylating, at 524,955 to 526,865 _0478 Echvi_0479: Echvi_0479 - Predicted dehydrogenases and related proteins, at 527,175 to 528,251 _0479 Position (kb) 524 525 526 527Strain fitness (log2 ratio) -2 -1 0 1 2 3at 523.981 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.982 kb on - strand, within Echvi_0477at 523.982 kb on - strand, within Echvi_0477at 523.982 kb on - strand, within Echvi_0477at 524.059 kb on - strand, within Echvi_0477at 524.123 kb on - strand, within Echvi_0477at 524.162 kb on - strand, within Echvi_0477at 524.317 kb on - strand, within Echvi_0477at 524.333 kb on - strand, within Echvi_0477at 524.571 kb on + strand, within Echvi_0477at 524.656 kb on + strand, within Echvi_0477at 524.662 kb on + strand, within Echvi_0477at 524.662 kb on + strand, within Echvi_0477at 524.662 kb on + strand, within Echvi_0477at 524.667 kb on - strand, within Echvi_0477at 524.683 kb on + strand, within Echvi_0477at 524.683 kb on + strand, within Echvi_0477at 524.696 kb on + strand, within Echvi_0477at 524.696 kb on + strand, within Echvi_0477at 524.697 kb on - strand, within Echvi_0477at 524.697 kb on - strand, within Echvi_0477at 524.766 kb on + strandat 524.766 kb on + strandat 524.766 kb on + strandat 524.770 kb on + strandat 524.770 kb on + strandat 524.770 kb on + strandat 524.771 kb on - strandat 524.771 kb on - strandat 524.771 kb on - strandat 524.771 kb on - strandat 524.771 kb on - strandat 524.833 kb on - strandat 524.837 kb on - strandat 524.837 kb on - strandat 524.837 kb on - strandat 524.880 kb on - strandat 524.899 kb on - strandat 524.903 kb on - strandat 524.918 kb on + strandat 524.918 kb on + strandat 524.922 kb on + strandat 524.922 kb on + strandat 524.922 kb on + strandat 525.060 kb on + strandat 525.060 kb on + strandat 525.162 kb on + strand, within Echvi_0478at 525.162 kb on + strand, within Echvi_0478at 525.243 kb on + strand, within Echvi_0478at 525.244 kb on - strand, within Echvi_0478at 525.400 kb on + strand, within Echvi_0478at 525.400 kb on + strand, within Echvi_0478at 525.400 kb on + strand, within Echvi_0478at 525.400 kb on + strand, within Echvi_0478at 525.498 kb on - strand, within Echvi_0478at 525.563 kb on + strand, within Echvi_0478at 525.676 kb on + strand, within Echvi_0478at 525.677 kb on - strand, within Echvi_0478at 525.783 kb on + strand, within Echvi_0478at 525.783 kb on + strand, within Echvi_0478at 525.784 kb on - strand, within Echvi_0478at 525.784 kb on - strand, within Echvi_0478at 525.784 kb on - strand, within Echvi_0478at 525.793 kb on + strand, within Echvi_0478at 525.793 kb on + strand, within Echvi_0478at 525.794 kb on - strand, within Echvi_0478at 525.850 kb on + strand, within Echvi_0478at 525.850 kb on + strand, within Echvi_0478at 525.850 kb on + strand, within Echvi_0478at 525.850 kb on + strand, within Echvi_0478at 525.858 kb on - strand, within Echvi_0478at 525.858 kb on - strand, within Echvi_0478at 525.858 kb on - strand, within Echvi_0478at 525.875 kb on + strand, within Echvi_0478at 525.960 kb on + strand, within Echvi_0478at 526.024 kb on + strand, within Echvi_0478at 526.025 kb on - strand, within Echvi_0478at 526.071 kb on + strand, within Echvi_0478at 526.071 kb on + strand, within Echvi_0478at 526.213 kb on - strand, within Echvi_0478at 526.267 kb on - strand, within Echvi_0478at 526.267 kb on - strand, within Echvi_0478at 526.296 kb on + strand, within Echvi_0478at 526.302 kb on + strand, within Echvi_0478at 526.374 kb on + strand, within Echvi_0478at 526.403 kb on + strand, within Echvi_0478at 526.413 kb on + strand, within Echvi_0478at 526.413 kb on + strand, within Echvi_0478at 526.414 kb on - strand, within Echvi_0478at 526.419 kb on - strand, within Echvi_0478at 526.443 kb on + strand, within Echvi_0478at 526.443 kb on + strand, within Echvi_0478at 526.491 kb on + strand, within Echvi_0478at 526.508 kb on + strand, within Echvi_0478at 526.508 kb on + strand, within Echvi_0478at 526.509 kb on - strand, within Echvi_0478at 526.509 kb on - strand, within Echvi_0478at 526.510 kb on + strand, within Echvi_0478at 526.510 kb on + strand, within Echvi_0478at 526.511 kb on - strand, within Echvi_0478at 526.511 kb on - strand, within Echvi_0478at 526.511 kb on - strand, within Echvi_0478at 526.511 kb on - strand, within Echvi_0478at 526.511 kb on - strand, within Echvi_0478at 526.511 kb on - strand, within Echvi_0478at 526.511 kb on - strand, within Echvi_0478at 526.511 kb on - strand, within Echvi_0478at 526.532 kb on + strand, within Echvi_0478at 526.532 kb on + strand, within Echvi_0478at 526.854 kb on + strandat 526.914 kb on + strandat 526.914 kb on + strandat 526.914 kb on + strandat 526.954 kb on + strandat 526.997 kb on + strandat 527.055 kb on - strandat 527.055 kb on - strandat 527.055 kb on - strandat 527.072 kb on - strandat 527.140 kb on + strandat 527.141 kb on - strandat 527.217 kb on - strandat 527.217 kb on - strandat 527.348 kb on + strand, within Echvi_0479at 527.348 kb on + strand, within Echvi_0479at 527.349 kb on - strand, within Echvi_0479at 527.349 kb on - strand, within Echvi_0479at 527.393 kb on + strand, within Echvi_0479at 527.393 kb on + strand, within Echvi_0479at 527.394 kb on - strand, within Echvi_0479at 527.394 kb on - strand, within Echvi_0479at 527.419 kb on - strand, within Echvi_0479at 527.477 kb on + strand, within Echvi_0479at 527.478 kb on - strand, within Echvi_0479at 527.482 kb on + strand, within Echvi_0479at 527.545 kb on - strand, within Echvi_0479at 527.545 kb on - strand, within Echvi_0479at 527.545 kb on - strand, within Echvi_0479at 527.547 kb on - strand, within Echvi_0479at 527.715 kb on + strand, within Echvi_0479at 527.715 kb on + strand, within Echvi_0479at 527.715 kb on + strand, within Echvi_0479at 527.716 kb on - strand, within Echvi_0479at 527.793 kb on - strand, within Echvi_0479at 527.808 kb on + strand, within Echvi_0479at 527.809 kb on - strand, within Echvi_0479at 527.809 kb on - strand, within Echvi_0479at 527.810 kb on + strand, within Echvi_0479at 527.810 kb on + strand, within Echvi_0479at 527.815 kb on - strand, within Echvi_0479

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.06 mg/ml
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523,981 + Echvi_0477 0.44 +0.0
523,981 + Echvi_0477 0.44 -0.0
523,981 + Echvi_0477 0.44 -0.4
523,981 + Echvi_0477 0.44 -0.7
523,981 + Echvi_0477 0.44 -1.4
523,981 + Echvi_0477 0.44 -1.5
523,982 - Echvi_0477 0.44 +0.9
523,982 - Echvi_0477 0.44 -0.4
523,982 - Echvi_0477 0.44 -0.5
524,059 - Echvi_0477 0.49 +0.9
524,123 - Echvi_0477 0.53 -1.1
524,162 - Echvi_0477 0.55 -0.1
524,317 - Echvi_0477 0.65 +0.2
524,333 - Echvi_0477 0.66 +1.2
524,571 + Echvi_0477 0.82 -0.2
524,656 + Echvi_0477 0.87 -0.6
524,662 + Echvi_0477 0.88 -0.7
524,662 + Echvi_0477 0.88 +2.0
524,662 + Echvi_0477 0.88 -0.5
524,667 - Echvi_0477 0.88 +1.0
524,683 + Echvi_0477 0.89 -0.4
524,683 + Echvi_0477 0.89 +0.2
524,696 + Echvi_0477 0.90 +1.1
524,696 + Echvi_0477 0.90 +0.2
524,697 - Echvi_0477 0.90 +0.6
524,697 - Echvi_0477 0.90 +0.4
524,766 + -0.1
524,766 + +0.2
524,766 + +0.9
524,770 + -1.8
524,770 + +1.2
524,770 + +1.9
524,771 - +0.5
524,771 - +1.3
524,771 - -1.1
524,771 - -0.1
524,771 - -0.8
524,833 - +0.3
524,837 - +2.1
524,837 - +0.9
524,837 - +1.0
524,880 - -1.3
524,899 - +0.4
524,903 - -0.1
524,918 + -0.6
524,918 + -0.1
524,922 + -0.5
524,922 + -0.1
524,922 + -0.1
525,060 + -1.1
525,060 + +0.5
525,162 + Echvi_0478 0.11 +1.2
525,162 + Echvi_0478 0.11 +0.9
525,243 + Echvi_0478 0.15 +0.1
525,244 - Echvi_0478 0.15 +0.1
525,400 + Echvi_0478 0.23 -1.5
525,400 + Echvi_0478 0.23 -0.4
525,400 + Echvi_0478 0.23 +0.3
525,400 + Echvi_0478 0.23 -0.0
525,498 - Echvi_0478 0.28 +1.1
525,563 + Echvi_0478 0.32 +0.9
525,676 + Echvi_0478 0.38 -0.3
525,677 - Echvi_0478 0.38 +0.3
525,783 + Echvi_0478 0.43 +0.8
525,783 + Echvi_0478 0.43 +2.3
525,784 - Echvi_0478 0.43 +1.4
525,784 - Echvi_0478 0.43 -1.0
525,784 - Echvi_0478 0.43 -0.6
525,793 + Echvi_0478 0.44 -1.3
525,793 + Echvi_0478 0.44 -0.3
525,794 - Echvi_0478 0.44 +1.0
525,850 + Echvi_0478 0.47 +1.1
525,850 + Echvi_0478 0.47 +0.0
525,850 + Echvi_0478 0.47 +0.4
525,850 + Echvi_0478 0.47 -1.5
525,858 - Echvi_0478 0.47 -0.5
525,858 - Echvi_0478 0.47 -0.1
525,858 - Echvi_0478 0.47 -0.1
525,875 + Echvi_0478 0.48 +0.1
525,960 + Echvi_0478 0.53 -0.6
526,024 + Echvi_0478 0.56 +0.9
526,025 - Echvi_0478 0.56 +0.4
526,071 + Echvi_0478 0.58 +0.5
526,071 + Echvi_0478 0.58 -1.3
526,213 - Echvi_0478 0.66 +0.2
526,267 - Echvi_0478 0.69 +0.4
526,267 - Echvi_0478 0.69 -0.3
526,296 + Echvi_0478 0.70 +1.1
526,302 + Echvi_0478 0.70 -1.5
526,374 + Echvi_0478 0.74 -0.7
526,403 + Echvi_0478 0.76 +0.3
526,413 + Echvi_0478 0.76 -1.5
526,413 + Echvi_0478 0.76 -2.0
526,414 - Echvi_0478 0.76 +1.0
526,419 - Echvi_0478 0.77 +0.6
526,443 + Echvi_0478 0.78 -0.5
526,443 + Echvi_0478 0.78 +0.1
526,491 + Echvi_0478 0.80 +3.4
526,508 + Echvi_0478 0.81 +0.4
526,508 + Echvi_0478 0.81 -0.1
526,509 - Echvi_0478 0.81 +0.2
526,509 - Echvi_0478 0.81 +1.1
526,510 + Echvi_0478 0.81 +2.0
526,510 + Echvi_0478 0.81 +0.3
526,511 - Echvi_0478 0.81 +1.9
526,511 - Echvi_0478 0.81 -0.7
526,511 - Echvi_0478 0.81 +0.3
526,511 - Echvi_0478 0.81 +0.5
526,511 - Echvi_0478 0.81 -1.5
526,511 - Echvi_0478 0.81 +1.5
526,511 - Echvi_0478 0.81 -2.5
526,511 - Echvi_0478 0.81 +0.3
526,532 + Echvi_0478 0.83 +1.6
526,532 + Echvi_0478 0.83 -1.1
526,854 + +1.0
526,914 + -0.4
526,914 + -0.6
526,914 + +0.3
526,954 + +2.9
526,997 + -0.3
527,055 - -1.0
527,055 - +0.1
527,055 - +1.4
527,072 - +0.1
527,140 + -1.1
527,141 - +1.3
527,217 - +1.4
527,217 - +0.3
527,348 + Echvi_0479 0.16 +0.3
527,348 + Echvi_0479 0.16 +0.9
527,349 - Echvi_0479 0.16 +0.2
527,349 - Echvi_0479 0.16 +2.3
527,393 + Echvi_0479 0.20 -2.1
527,393 + Echvi_0479 0.20 -0.6
527,394 - Echvi_0479 0.20 +0.7
527,394 - Echvi_0479 0.20 -0.3
527,419 - Echvi_0479 0.23 -1.8
527,477 + Echvi_0479 0.28 +0.7
527,478 - Echvi_0479 0.28 -1.8
527,482 + Echvi_0479 0.29 -0.6
527,545 - Echvi_0479 0.34 +0.5
527,545 - Echvi_0479 0.34 +0.9
527,545 - Echvi_0479 0.34 -2.4
527,547 - Echvi_0479 0.35 -0.5
527,715 + Echvi_0479 0.50 +0.0
527,715 + Echvi_0479 0.50 +0.5
527,715 + Echvi_0479 0.50 +1.4
527,716 - Echvi_0479 0.50 +1.0
527,793 - Echvi_0479 0.57 -0.3
527,808 + Echvi_0479 0.59 -1.6
527,809 - Echvi_0479 0.59 +0.6
527,809 - Echvi_0479 0.59 +0.2
527,810 + Echvi_0479 0.59 -1.1
527,810 + Echvi_0479 0.59 -0.8
527,815 - Echvi_0479 0.59 +0.3

Or see this region's nucleotide sequence