Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0383

Experiment: m.b. Tetracycline 0.06 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0382 and Echvi_0383 are separated by 0 nucleotidesEchvi_0383 and Echvi_0384 overlap by 1 nucleotides Echvi_0382: Echvi_0382 - Type I restriction-modification system methyltransferase subunit, at 407,843 to 409,279 _0382 Echvi_0383: Echvi_0383 - Virulence protein, at 409,280 to 410,266 _0383 Echvi_0384: Echvi_0384 - Type I site-specific restriction-modification system, R (restriction) subunit and related helicases, at 410,266 to 412,722 _0384 Position (kb) 409 410 411Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 408.329 kb on - strand, within Echvi_0382at 408.329 kb on - strand, within Echvi_0382at 408.344 kb on + strand, within Echvi_0382at 408.345 kb on - strand, within Echvi_0382at 408.421 kb on + strand, within Echvi_0382at 408.422 kb on - strand, within Echvi_0382at 408.486 kb on + strand, within Echvi_0382at 408.487 kb on - strand, within Echvi_0382at 408.541 kb on + strand, within Echvi_0382at 408.541 kb on + strand, within Echvi_0382at 408.541 kb on + strand, within Echvi_0382at 408.576 kb on + strand, within Echvi_0382at 408.591 kb on + strand, within Echvi_0382at 408.592 kb on - strand, within Echvi_0382at 408.617 kb on + strand, within Echvi_0382at 408.617 kb on + strand, within Echvi_0382at 408.619 kb on + strand, within Echvi_0382at 408.619 kb on + strand, within Echvi_0382at 408.620 kb on - strand, within Echvi_0382at 408.620 kb on - strand, within Echvi_0382at 408.620 kb on - strand, within Echvi_0382at 408.620 kb on - strand, within Echvi_0382at 408.635 kb on + strand, within Echvi_0382at 408.636 kb on - strand, within Echvi_0382at 408.641 kb on - strand, within Echvi_0382at 408.668 kb on - strand, within Echvi_0382at 408.681 kb on + strand, within Echvi_0382at 408.700 kb on + strand, within Echvi_0382at 408.700 kb on + strand, within Echvi_0382at 408.700 kb on + strand, within Echvi_0382at 408.700 kb on + strand, within Echvi_0382at 408.775 kb on - strand, within Echvi_0382at 408.869 kb on + strand, within Echvi_0382at 408.890 kb on + strand, within Echvi_0382at 408.890 kb on + strand, within Echvi_0382at 408.921 kb on + strand, within Echvi_0382at 408.922 kb on - strand, within Echvi_0382at 408.951 kb on - strand, within Echvi_0382at 408.956 kb on + strand, within Echvi_0382at 408.956 kb on + strand, within Echvi_0382at 408.998 kb on + strand, within Echvi_0382at 408.999 kb on - strand, within Echvi_0382at 409.252 kb on + strandat 409.253 kb on - strandat 409.256 kb on + strandat 409.282 kb on - strandat 409.298 kb on + strandat 409.501 kb on + strand, within Echvi_0383at 409.502 kb on - strand, within Echvi_0383at 409.502 kb on - strand, within Echvi_0383at 409.503 kb on + strand, within Echvi_0383at 409.503 kb on + strand, within Echvi_0383at 409.503 kb on + strand, within Echvi_0383at 409.503 kb on + strand, within Echvi_0383at 409.503 kb on + strand, within Echvi_0383at 409.503 kb on + strand, within Echvi_0383at 409.607 kb on + strand, within Echvi_0383at 409.608 kb on - strand, within Echvi_0383at 409.651 kb on + strand, within Echvi_0383at 409.652 kb on - strand, within Echvi_0383at 409.680 kb on - strand, within Echvi_0383at 409.785 kb on + strand, within Echvi_0383at 409.785 kb on + strand, within Echvi_0383at 409.785 kb on + strand, within Echvi_0383at 409.786 kb on - strand, within Echvi_0383at 409.791 kb on - strand, within Echvi_0383at 409.791 kb on - strand, within Echvi_0383at 409.792 kb on + strand, within Echvi_0383at 409.799 kb on - strand, within Echvi_0383at 409.803 kb on + strand, within Echvi_0383at 409.803 kb on + strand, within Echvi_0383at 409.803 kb on + strand, within Echvi_0383at 409.803 kb on + strand, within Echvi_0383at 409.803 kb on + strand, within Echvi_0383at 409.803 kb on + strand, within Echvi_0383at 409.803 kb on + strand, within Echvi_0383at 409.803 kb on + strand, within Echvi_0383at 409.804 kb on - strand, within Echvi_0383at 409.804 kb on - strand, within Echvi_0383at 409.804 kb on - strand, within Echvi_0383at 409.804 kb on - strand, within Echvi_0383at 409.804 kb on - strand, within Echvi_0383at 409.804 kb on - strand, within Echvi_0383at 409.804 kb on - strand, within Echvi_0383at 409.846 kb on + strand, within Echvi_0383at 409.846 kb on + strand, within Echvi_0383at 409.846 kb on + strand, within Echvi_0383at 409.846 kb on + strand, within Echvi_0383at 409.846 kb on + strand, within Echvi_0383at 409.846 kb on + strand, within Echvi_0383at 409.846 kb on + strand, within Echvi_0383at 409.847 kb on - strand, within Echvi_0383at 409.847 kb on - strandat 410.282 kb on + strandat 410.283 kb on - strandat 410.284 kb on + strandat 410.432 kb on + strandat 410.432 kb on + strandat 410.432 kb on + strandat 410.432 kb on + strandat 410.432 kb on + strandat 410.433 kb on - strandat 410.433 kb on - strandat 410.477 kb on + strandat 410.523 kb on + strand, within Echvi_0384at 410.523 kb on + strand, within Echvi_0384at 410.523 kb on + strand, within Echvi_0384at 410.560 kb on + strand, within Echvi_0384at 410.562 kb on + strand, within Echvi_0384at 410.562 kb on + strand, within Echvi_0384at 410.563 kb on - strand, within Echvi_0384at 410.738 kb on - strand, within Echvi_0384at 410.738 kb on - strand, within Echvi_0384at 410.775 kb on - strand, within Echvi_0384at 410.800 kb on + strand, within Echvi_0384at 410.800 kb on + strand, within Echvi_0384at 410.894 kb on + strand, within Echvi_0384at 410.894 kb on + strand, within Echvi_0384at 410.992 kb on + strand, within Echvi_0384at 411.000 kb on + strand, within Echvi_0384at 411.000 kb on + strand, within Echvi_0384at 411.001 kb on - strand, within Echvi_0384at 411.001 kb on - strand, within Echvi_0384at 411.001 kb on - strand, within Echvi_0384at 411.001 kb on - strand, within Echvi_0384at 411.064 kb on - strand, within Echvi_0384at 411.109 kb on + strand, within Echvi_0384at 411.109 kb on + strand, within Echvi_0384at 411.112 kb on + strand, within Echvi_0384at 411.112 kb on + strand, within Echvi_0384at 411.113 kb on - strand, within Echvi_0384at 411.121 kb on - strand, within Echvi_0384at 411.165 kb on + strand, within Echvi_0384at 411.166 kb on - strand, within Echvi_0384at 411.196 kb on + strand, within Echvi_0384at 411.197 kb on - strand, within Echvi_0384at 411.207 kb on + strandat 411.208 kb on - strand, within Echvi_0384at 411.208 kb on - strand, within Echvi_0384at 411.224 kb on + strand, within Echvi_0384

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.06 mg/ml
remove
408,329 - Echvi_0382 0.34 +0.4
408,329 - Echvi_0382 0.34 +0.9
408,344 + Echvi_0382 0.35 -0.5
408,345 - Echvi_0382 0.35 +0.2
408,421 + Echvi_0382 0.40 +1.8
408,422 - Echvi_0382 0.40 +0.4
408,486 + Echvi_0382 0.45 -0.6
408,487 - Echvi_0382 0.45 -0.3
408,541 + Echvi_0382 0.49 -0.2
408,541 + Echvi_0382 0.49 -0.3
408,541 + Echvi_0382 0.49 +0.4
408,576 + Echvi_0382 0.51 -0.4
408,591 + Echvi_0382 0.52 -0.2
408,592 - Echvi_0382 0.52 +1.8
408,617 + Echvi_0382 0.54 +0.1
408,617 + Echvi_0382 0.54 -0.2
408,619 + Echvi_0382 0.54 +0.8
408,619 + Echvi_0382 0.54 +0.4
408,620 - Echvi_0382 0.54 +1.4
408,620 - Echvi_0382 0.54 +2.4
408,620 - Echvi_0382 0.54 -0.5
408,620 - Echvi_0382 0.54 -0.7
408,635 + Echvi_0382 0.55 +0.4
408,636 - Echvi_0382 0.55 +0.6
408,641 - Echvi_0382 0.56 -0.8
408,668 - Echvi_0382 0.57 +1.8
408,681 + Echvi_0382 0.58 -1.3
408,700 + Echvi_0382 0.60 +1.4
408,700 + Echvi_0382 0.60 +0.1
408,700 + Echvi_0382 0.60 -1.2
408,700 + Echvi_0382 0.60 -0.2
408,775 - Echvi_0382 0.65 -0.5
408,869 + Echvi_0382 0.71 +1.2
408,890 + Echvi_0382 0.73 -1.4
408,890 + Echvi_0382 0.73 -0.3
408,921 + Echvi_0382 0.75 -0.2
408,922 - Echvi_0382 0.75 -0.5
408,951 - Echvi_0382 0.77 -1.5
408,956 + Echvi_0382 0.77 +0.0
408,956 + Echvi_0382 0.77 -0.8
408,998 + Echvi_0382 0.80 +0.5
408,999 - Echvi_0382 0.80 -0.0
409,252 + +0.5
409,253 - +1.1
409,256 + +0.1
409,282 - +0.0
409,298 + -1.9
409,501 + Echvi_0383 0.22 +1.3
409,502 - Echvi_0383 0.22 -1.7
409,502 - Echvi_0383 0.22 -1.3
409,503 + Echvi_0383 0.23 +0.4
409,503 + Echvi_0383 0.23 -0.2
409,503 + Echvi_0383 0.23 -0.7
409,503 + Echvi_0383 0.23 +0.4
409,503 + Echvi_0383 0.23 -0.9
409,503 + Echvi_0383 0.23 -0.6
409,607 + Echvi_0383 0.33 +0.2
409,608 - Echvi_0383 0.33 +0.3
409,651 + Echvi_0383 0.38 -1.5
409,652 - Echvi_0383 0.38 +0.0
409,680 - Echvi_0383 0.41 +0.5
409,785 + Echvi_0383 0.51 -1.6
409,785 + Echvi_0383 0.51 -0.3
409,785 + Echvi_0383 0.51 -0.3
409,786 - Echvi_0383 0.51 +0.4
409,791 - Echvi_0383 0.52 +1.4
409,791 - Echvi_0383 0.52 -0.2
409,792 + Echvi_0383 0.52 +0.3
409,799 - Echvi_0383 0.53 -1.2
409,803 + Echvi_0383 0.53 +1.3
409,803 + Echvi_0383 0.53 +1.8
409,803 + Echvi_0383 0.53 -0.2
409,803 + Echvi_0383 0.53 +0.2
409,803 + Echvi_0383 0.53 -0.5
409,803 + Echvi_0383 0.53 +1.8
409,803 + Echvi_0383 0.53 +1.0
409,803 + Echvi_0383 0.53 -1.3
409,804 - Echvi_0383 0.53 +0.3
409,804 - Echvi_0383 0.53 -1.0
409,804 - Echvi_0383 0.53 -0.0
409,804 - Echvi_0383 0.53 +1.0
409,804 - Echvi_0383 0.53 +0.0
409,804 - Echvi_0383 0.53 +0.3
409,804 - Echvi_0383 0.53 -1.5
409,846 + Echvi_0383 0.57 +0.1
409,846 + Echvi_0383 0.57 -0.6
409,846 + Echvi_0383 0.57 +0.7
409,846 + Echvi_0383 0.57 -0.4
409,846 + Echvi_0383 0.57 +1.0
409,846 + Echvi_0383 0.57 -0.7
409,846 + Echvi_0383 0.57 -0.3
409,847 - Echvi_0383 0.57 -1.0
409,847 - -0.2
410,282 + -0.2
410,283 - +1.1
410,284 + +0.3
410,432 + -0.3
410,432 + +0.4
410,432 + +0.0
410,432 + -1.6
410,432 + +0.3
410,433 - -0.0
410,433 - +0.7
410,477 + -0.1
410,523 + Echvi_0384 0.10 -0.2
410,523 + Echvi_0384 0.10 -0.2
410,523 + Echvi_0384 0.10 -0.0
410,560 + Echvi_0384 0.12 +1.6
410,562 + Echvi_0384 0.12 -0.2
410,562 + Echvi_0384 0.12 +0.3
410,563 - Echvi_0384 0.12 -0.1
410,738 - Echvi_0384 0.19 -1.7
410,738 - Echvi_0384 0.19 -0.6
410,775 - Echvi_0384 0.21 +0.3
410,800 + Echvi_0384 0.22 -1.3
410,800 + Echvi_0384 0.22 +0.2
410,894 + Echvi_0384 0.26 +0.4
410,894 + Echvi_0384 0.26 +0.6
410,992 + Echvi_0384 0.30 -0.5
411,000 + Echvi_0384 0.30 -0.5
411,000 + Echvi_0384 0.30 +1.8
411,001 - Echvi_0384 0.30 +1.2
411,001 - Echvi_0384 0.30 -0.6
411,001 - Echvi_0384 0.30 +0.8
411,001 - Echvi_0384 0.30 -0.2
411,064 - Echvi_0384 0.32 -0.1
411,109 + Echvi_0384 0.34 +0.6
411,109 + Echvi_0384 0.34 +0.5
411,112 + Echvi_0384 0.34 +0.1
411,112 + Echvi_0384 0.34 +0.9
411,113 - Echvi_0384 0.34 +2.0
411,121 - Echvi_0384 0.35 +4.2
411,165 + Echvi_0384 0.37 -1.1
411,166 - Echvi_0384 0.37 +0.3
411,196 + Echvi_0384 0.38 -0.5
411,197 - Echvi_0384 0.38 -1.1
411,207 + +1.8
411,208 - Echvi_0384 0.38 +0.9
411,208 - Echvi_0384 0.38 +1.0
411,224 + Echvi_0384 0.39 -1.3

Or see this region's nucleotide sequence