Experiment: m.b. Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0844 and Echvi_0845 are separated by 35 nucleotides Echvi_0845 and Echvi_0846 are separated by 425 nucleotides
Echvi_0844: Echvi_0844 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 964,626 to 966,128
_0844
Echvi_0845: Echvi_0845 - hypothetical protein, at 966,164 to 966,709
_0845
Echvi_0846: Echvi_0846 - hypothetical protein, at 967,135 to 970,137
_0846
Position (kb) 966
967 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 966.130 kb on - strand at 966.159 kb on + strand at 966.159 kb on + strand at 966.159 kb on + strand at 966.228 kb on + strand, within Echvi_0845 at 966.229 kb on - strand, within Echvi_0845 at 966.233 kb on - strand, within Echvi_0845 at 966.236 kb on + strand, within Echvi_0845 at 966.394 kb on + strand, within Echvi_0845 at 966.394 kb on + strand, within Echvi_0845 at 966.395 kb on - strand, within Echvi_0845 at 966.400 kb on + strand, within Echvi_0845 at 966.456 kb on - strand, within Echvi_0845 at 966.501 kb on + strand, within Echvi_0845 at 966.501 kb on + strand, within Echvi_0845 at 966.502 kb on - strand, within Echvi_0845 at 966.507 kb on - strand, within Echvi_0845 at 966.532 kb on - strand, within Echvi_0845 at 966.572 kb on + strand, within Echvi_0845 at 966.632 kb on + strand, within Echvi_0845 at 966.667 kb on - strand at 966.688 kb on - strand at 966.707 kb on + strand at 966.734 kb on + strand at 966.751 kb on + strand at 966.752 kb on - strand at 966.752 kb on - strand at 966.752 kb on - strand at 966.752 kb on - strand at 966.762 kb on + strand at 966.763 kb on - strand at 966.768 kb on - strand at 966.779 kb on + strand at 966.806 kb on + strand at 966.814 kb on + strand at 966.850 kb on + strand at 966.863 kb on - strand at 966.866 kb on + strand at 966.886 kb on + strand at 966.886 kb on + strand at 966.887 kb on - strand at 966.887 kb on - strand at 966.925 kb on + strand at 966.925 kb on + strand at 966.931 kb on + strand at 966.931 kb on + strand at 966.935 kb on + strand at 966.936 kb on - strand at 966.936 kb on - strand at 966.936 kb on - strand at 966.948 kb on - strand at 967.011 kb on + strand at 967.012 kb on - strand at 967.012 kb on - strand at 967.012 kb on - strand at 967.016 kb on - strand at 967.070 kb on + strand at 967.070 kb on + strand at 967.070 kb on + strand at 967.071 kb on - strand at 967.108 kb on - strand at 967.125 kb on - strand at 967.125 kb on - strand at 967.125 kb on - strand at 967.132 kb on - strand at 967.132 kb on - strand at 967.132 kb on - strand at 967.132 kb on - strand at 967.136 kb on + strand at 967.137 kb on - strand at 967.137 kb on - strand at 967.258 kb on - strand at 967.258 kb on - strand at 967.324 kb on - strand at 967.324 kb on - strand at 967.356 kb on + strand at 967.357 kb on - strand at 967.445 kb on + strand, within Echvi_0846 at 967.445 kb on + strand, within Echvi_0846 at 967.446 kb on - strand, within Echvi_0846 at 967.446 kb on - strand, within Echvi_0846 at 967.446 kb on - strand, within Echvi_0846 at 967.446 kb on - strand, within Echvi_0846 at 967.446 kb on - strand, within Echvi_0846 at 967.513 kb on - strand, within Echvi_0846 at 967.585 kb on - strand, within Echvi_0846 at 967.612 kb on - strand, within Echvi_0846 at 967.612 kb on - strand, within Echvi_0846 at 967.614 kb on + strand, within Echvi_0846 at 967.614 kb on + strand, within Echvi_0846 at 967.704 kb on + strand, within Echvi_0846 at 967.705 kb on - strand, within Echvi_0846
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.005 mg/ml remove 966,130 - +0.6 966,159 + -0.3 966,159 + +0.1 966,159 + -0.3 966,228 + Echvi_0845 0.12 +1.3 966,229 - Echvi_0845 0.12 -1.5 966,233 - Echvi_0845 0.13 -0.6 966,236 + Echvi_0845 0.13 +0.1 966,394 + Echvi_0845 0.42 -0.7 966,394 + Echvi_0845 0.42 -1.7 966,395 - Echvi_0845 0.42 -0.5 966,400 + Echvi_0845 0.43 +0.5 966,456 - Echvi_0845 0.53 +0.6 966,501 + Echvi_0845 0.62 +0.4 966,501 + Echvi_0845 0.62 +1.1 966,502 - Echvi_0845 0.62 +0.5 966,507 - Echvi_0845 0.63 +0.9 966,532 - Echvi_0845 0.67 +0.4 966,572 + Echvi_0845 0.75 +0.7 966,632 + Echvi_0845 0.86 -3.0 966,667 - -0.2 966,688 - -2.3 966,707 + +0.7 966,734 + -3.6 966,751 + +0.6 966,752 - +0.8 966,752 - +0.2 966,752 - -0.2 966,752 - +0.0 966,762 + +0.3 966,763 - +1.4 966,768 - +0.6 966,779 + +0.4 966,806 + +0.1 966,814 + -0.4 966,850 + +1.3 966,863 - +0.0 966,866 + -0.2 966,886 + -1.3 966,886 + +0.1 966,887 - +0.6 966,887 - +0.2 966,925 + -0.1 966,925 + -0.5 966,931 + +0.6 966,931 + +0.8 966,935 + -0.2 966,936 - -1.7 966,936 - -1.9 966,936 - -0.2 966,948 - +1.1 967,011 + +1.8 967,012 - +0.7 967,012 - -1.1 967,012 - +0.3 967,016 - +0.1 967,070 + -1.7 967,070 + -0.8 967,070 + +0.2 967,071 - +0.3 967,108 - -1.3 967,125 - +0.5 967,125 - +0.3 967,125 - -0.1 967,132 - +0.7 967,132 - -1.3 967,132 - -0.6 967,132 - +0.5 967,136 + +0.4 967,137 - -1.2 967,137 - -0.5 967,258 - +2.1 967,258 - +0.4 967,324 - +0.1 967,324 - -0.4 967,356 + +0.1 967,357 - +2.6 967,445 + Echvi_0846 0.10 +0.8 967,445 + Echvi_0846 0.10 +0.4 967,446 - Echvi_0846 0.10 -1.0 967,446 - Echvi_0846 0.10 -0.4 967,446 - Echvi_0846 0.10 +0.0 967,446 - Echvi_0846 0.10 -1.2 967,446 - Echvi_0846 0.10 +2.4 967,513 - Echvi_0846 0.13 +1.1 967,585 - Echvi_0846 0.15 +0.9 967,612 - Echvi_0846 0.16 +0.1 967,612 - Echvi_0846 0.16 -0.0 967,614 + Echvi_0846 0.16 -0.1 967,614 + Echvi_0846 0.16 -0.3 967,704 + Echvi_0846 0.19 -1.1 967,705 - Echvi_0846 0.19 -2.8
Or see this region's nucleotide sequence