Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2180

Experiment: m.b. Paraquat dichloride 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2179 and B158DRAFT_2180 are separated by 243 nucleotidesB158DRAFT_2180 and B158DRAFT_2181 are separated by 339 nucleotides B158DRAFT_2179: B158DRAFT_2179 - L-aspartate oxidase (EC 1.4.3.16), at 325,571 to 327,187 _2179 B158DRAFT_2180: B158DRAFT_2180 - RNA polymerase, sigma-24 subunit, RpoE, at 327,431 to 328,021 _2180 B158DRAFT_2181: B158DRAFT_2181 - Negative regulator of sigma E activity, at 328,361 to 329,041 _2181 Position (kb) 327 328 329Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 326.485 kb on + strand, within B158DRAFT_2179at 326.494 kb on - strand, within B158DRAFT_2179at 326.499 kb on + strand, within B158DRAFT_2179at 326.499 kb on + strand, within B158DRAFT_2179at 326.507 kb on - strand, within B158DRAFT_2179at 326.512 kb on - strand, within B158DRAFT_2179at 326.554 kb on + strand, within B158DRAFT_2179at 326.554 kb on + strand, within B158DRAFT_2179at 326.745 kb on + strand, within B158DRAFT_2179at 326.745 kb on + strand, within B158DRAFT_2179at 326.745 kb on + strand, within B158DRAFT_2179at 326.753 kb on - strand, within B158DRAFT_2179at 326.753 kb on - strand, within B158DRAFT_2179at 326.753 kb on - strand, within B158DRAFT_2179at 326.769 kb on + strand, within B158DRAFT_2179at 326.860 kb on + strand, within B158DRAFT_2179at 326.901 kb on - strand, within B158DRAFT_2179at 326.911 kb on - strand, within B158DRAFT_2179at 326.911 kb on - strand, within B158DRAFT_2179at 326.941 kb on + strand, within B158DRAFT_2179at 326.941 kb on + strand, within B158DRAFT_2179at 326.941 kb on + strand, within B158DRAFT_2179at 326.941 kb on + strand, within B158DRAFT_2179at 326.949 kb on - strand, within B158DRAFT_2179at 326.949 kb on - strand, within B158DRAFT_2179at 326.949 kb on - strand, within B158DRAFT_2179at 326.949 kb on - strand, within B158DRAFT_2179at 326.949 kb on - strand, within B158DRAFT_2179at 327.012 kb on - strand, within B158DRAFT_2179at 327.139 kb on + strandat 327.242 kb on + strandat 327.348 kb on + strandat 327.353 kb on + strandat 327.353 kb on + strandat 327.353 kb on + strandat 327.361 kb on - strandat 327.361 kb on - strandat 327.361 kb on - strandat 327.361 kb on - strandat 327.361 kb on - strandat 327.361 kb on - strandat 327.413 kb on - strandat 327.433 kb on + strandat 327.433 kb on - strandat 327.439 kb on + strandat 327.443 kb on + strandat 327.443 kb on + strandat 327.443 kb on + strandat 327.443 kb on + strandat 327.451 kb on - strandat 327.468 kb on - strandat 327.535 kb on - strand, within B158DRAFT_2180at 327.553 kb on - strand, within B158DRAFT_2180at 327.569 kb on - strand, within B158DRAFT_2180at 327.595 kb on + strand, within B158DRAFT_2180at 327.603 kb on - strand, within B158DRAFT_2180at 327.665 kb on + strand, within B158DRAFT_2180at 327.702 kb on + strand, within B158DRAFT_2180at 327.708 kb on + strand, within B158DRAFT_2180at 327.856 kb on + strand, within B158DRAFT_2180at 327.917 kb on + strand, within B158DRAFT_2180at 327.917 kb on + strand, within B158DRAFT_2180at 327.917 kb on + strand, within B158DRAFT_2180at 327.917 kb on + strand, within B158DRAFT_2180at 327.925 kb on - strand, within B158DRAFT_2180at 327.935 kb on + strand, within B158DRAFT_2180at 327.935 kb on + strand, within B158DRAFT_2180at 328.006 kb on + strandat 328.006 kb on + strandat 328.006 kb on + strandat 328.006 kb on + strandat 328.006 kb on + strandat 328.014 kb on - strandat 328.014 kb on - strandat 328.084 kb on + strandat 328.593 kb on + strand, within B158DRAFT_2181at 328.629 kb on + strand, within B158DRAFT_2181at 328.637 kb on - strand, within B158DRAFT_2181at 328.637 kb on - strand, within B158DRAFT_2181at 328.644 kb on + strand, within B158DRAFT_2181at 328.644 kb on + strand, within B158DRAFT_2181at 328.765 kb on + strand, within B158DRAFT_2181at 328.947 kb on - strand, within B158DRAFT_2181at 328.981 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.00390625 mg/ml
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326,485 + B158DRAFT_2179 0.57 -1.7
326,494 - B158DRAFT_2179 0.57 -1.6
326,499 + B158DRAFT_2179 0.57 -0.6
326,499 + B158DRAFT_2179 0.57 -1.6
326,507 - B158DRAFT_2179 0.58 -1.7
326,512 - B158DRAFT_2179 0.58 -1.3
326,554 + B158DRAFT_2179 0.61 -2.6
326,554 + B158DRAFT_2179 0.61 -2.5
326,745 + B158DRAFT_2179 0.73 +0.0
326,745 + B158DRAFT_2179 0.73 -1.6
326,745 + B158DRAFT_2179 0.73 -1.6
326,753 - B158DRAFT_2179 0.73 -1.1
326,753 - B158DRAFT_2179 0.73 -0.8
326,753 - B158DRAFT_2179 0.73 -1.9
326,769 + B158DRAFT_2179 0.74 -1.3
326,860 + B158DRAFT_2179 0.80 -1.7
326,901 - B158DRAFT_2179 0.82 -1.5
326,911 - B158DRAFT_2179 0.83 +0.4
326,911 - B158DRAFT_2179 0.83 -2.8
326,941 + B158DRAFT_2179 0.85 -2.0
326,941 + B158DRAFT_2179 0.85 -1.4
326,941 + B158DRAFT_2179 0.85 -0.9
326,941 + B158DRAFT_2179 0.85 -1.4
326,949 - B158DRAFT_2179 0.85 -2.2
326,949 - B158DRAFT_2179 0.85 -0.8
326,949 - B158DRAFT_2179 0.85 -0.6
326,949 - B158DRAFT_2179 0.85 -0.8
326,949 - B158DRAFT_2179 0.85 -0.3
327,012 - B158DRAFT_2179 0.89 -1.6
327,139 + +1.6
327,242 + -1.2
327,348 + -0.2
327,353 + -0.9
327,353 + -0.3
327,353 + -0.4
327,361 - -0.2
327,361 - -0.0
327,361 - -0.0
327,361 - -0.5
327,361 - +0.1
327,361 - +0.1
327,413 - +0.3
327,433 + -0.1
327,433 - +0.0
327,439 + -0.1
327,443 + +0.0
327,443 + -0.1
327,443 + -0.2
327,443 + -0.3
327,451 - +0.1
327,468 - +0.2
327,535 - B158DRAFT_2180 0.18 -0.1
327,553 - B158DRAFT_2180 0.21 -0.1
327,569 - B158DRAFT_2180 0.23 -0.1
327,595 + B158DRAFT_2180 0.28 -0.5
327,603 - B158DRAFT_2180 0.29 -0.4
327,665 + B158DRAFT_2180 0.40 +0.1
327,702 + B158DRAFT_2180 0.46 -0.3
327,708 + B158DRAFT_2180 0.47 +0.0
327,856 + B158DRAFT_2180 0.72 -0.2
327,917 + B158DRAFT_2180 0.82 +0.5
327,917 + B158DRAFT_2180 0.82 +0.0
327,917 + B158DRAFT_2180 0.82 +0.4
327,917 + B158DRAFT_2180 0.82 -0.3
327,925 - B158DRAFT_2180 0.84 -0.3
327,935 + B158DRAFT_2180 0.85 -0.1
327,935 + B158DRAFT_2180 0.85 -0.8
328,006 + +0.5
328,006 + -0.7
328,006 + +0.1
328,006 + +0.2
328,006 + -0.0
328,014 - -0.2
328,014 - +0.2
328,084 + -4.6
328,593 + B158DRAFT_2181 0.34 -1.6
328,629 + B158DRAFT_2181 0.39 -0.3
328,637 - B158DRAFT_2181 0.41 -0.3
328,637 - B158DRAFT_2181 0.41 +0.3
328,644 + B158DRAFT_2181 0.42 +0.4
328,644 + B158DRAFT_2181 0.42 +0.3
328,765 + B158DRAFT_2181 0.59 -2.0
328,947 - B158DRAFT_2181 0.86 +0.1
328,981 + -0.7

Or see this region's nucleotide sequence