Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1170

Experiment: m.b. Paraquat dichloride 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1169 and B158DRAFT_1170 are separated by 158 nucleotidesB158DRAFT_1170 and B158DRAFT_1171 overlap by 4 nucleotidesB158DRAFT_1171 and B158DRAFT_1172 are separated by 169 nucleotides B158DRAFT_1169: B158DRAFT_1169 - Predicted permeases, at 1,209,412 to 1,210,476 _1169 B158DRAFT_1170: B158DRAFT_1170 - Predicted methyltransferase, at 1,210,635 to 1,211,297 _1170 B158DRAFT_1171: B158DRAFT_1171 - Predicted membrane protein/domain, at 1,211,294 to 1,211,770 _1171 B158DRAFT_1172: B158DRAFT_1172 - Uncharacterized protein conserved in bacteria, at 1,211,940 to 1,213,736 _1172 Position (kb) 1210 1211 1212Strain fitness (log2 ratio) -1 0 1at 1210.471 kb on + strandat 1210.471 kb on + strandat 1210.479 kb on - strandat 1210.487 kb on + strandat 1210.487 kb on + strandat 1210.487 kb on + strandat 1210.487 kb on + strandat 1210.487 kb on + strandat 1210.489 kb on + strandat 1210.604 kb on + strandat 1210.604 kb on + strandat 1210.604 kb on + strandat 1210.604 kb on + strandat 1210.612 kb on - strandat 1210.612 kb on - strandat 1210.612 kb on - strandat 1210.708 kb on - strand, within B158DRAFT_1170at 1210.796 kb on + strand, within B158DRAFT_1170at 1210.796 kb on + strand, within B158DRAFT_1170at 1210.804 kb on - strand, within B158DRAFT_1170at 1210.804 kb on - strand, within B158DRAFT_1170at 1210.804 kb on - strand, within B158DRAFT_1170at 1210.822 kb on - strand, within B158DRAFT_1170at 1210.904 kb on + strand, within B158DRAFT_1170at 1210.910 kb on + strand, within B158DRAFT_1170at 1210.918 kb on - strand, within B158DRAFT_1170at 1210.967 kb on + strand, within B158DRAFT_1170at 1210.975 kb on - strand, within B158DRAFT_1170at 1210.979 kb on + strand, within B158DRAFT_1170at 1210.979 kb on + strand, within B158DRAFT_1170at 1211.023 kb on - strand, within B158DRAFT_1170at 1211.033 kb on + strand, within B158DRAFT_1170at 1211.078 kb on + strand, within B158DRAFT_1170at 1211.078 kb on + strand, within B158DRAFT_1170at 1211.083 kb on + strand, within B158DRAFT_1170at 1211.083 kb on + strand, within B158DRAFT_1170at 1211.083 kb on + strand, within B158DRAFT_1170at 1211.086 kb on - strand, within B158DRAFT_1170at 1211.086 kb on - strand, within B158DRAFT_1170at 1211.091 kb on - strand, within B158DRAFT_1170at 1211.217 kb on - strand, within B158DRAFT_1170at 1211.252 kb on + strandat 1211.253 kb on + strandat 1211.276 kb on - strandat 1211.321 kb on - strandat 1211.334 kb on + strandat 1211.334 kb on + strandat 1211.342 kb on - strand, within B158DRAFT_1171at 1211.344 kb on + strand, within B158DRAFT_1171at 1211.352 kb on - strand, within B158DRAFT_1171at 1211.352 kb on - strand, within B158DRAFT_1171at 1211.394 kb on + strand, within B158DRAFT_1171at 1211.431 kb on + strand, within B158DRAFT_1171at 1211.431 kb on + strand, within B158DRAFT_1171at 1211.431 kb on + strand, within B158DRAFT_1171at 1211.431 kb on + strand, within B158DRAFT_1171at 1211.439 kb on - strand, within B158DRAFT_1171at 1211.439 kb on - strand, within B158DRAFT_1171at 1211.439 kb on - strand, within B158DRAFT_1171at 1211.439 kb on - strand, within B158DRAFT_1171at 1211.439 kb on - strand, within B158DRAFT_1171at 1211.439 kb on - strand, within B158DRAFT_1171at 1211.464 kb on - strand, within B158DRAFT_1171at 1211.512 kb on + strand, within B158DRAFT_1171at 1211.512 kb on + strand, within B158DRAFT_1171at 1211.520 kb on - strand, within B158DRAFT_1171at 1211.520 kb on - strand, within B158DRAFT_1171at 1211.526 kb on + strand, within B158DRAFT_1171at 1211.534 kb on - strand, within B158DRAFT_1171at 1211.681 kb on + strand, within B158DRAFT_1171at 1211.681 kb on + strand, within B158DRAFT_1171at 1211.689 kb on - strand, within B158DRAFT_1171at 1211.738 kb on + strandat 1211.741 kb on - strandat 1211.745 kb on + strandat 1211.788 kb on + strandat 1211.796 kb on - strandat 1211.799 kb on + strandat 1211.831 kb on - strandat 1211.993 kb on - strandat 1212.009 kb on + strandat 1212.009 kb on + strandat 1212.012 kb on - strandat 1212.014 kb on + strandat 1212.017 kb on - strandat 1212.066 kb on + strandat 1212.066 kb on - strandat 1212.066 kb on - strandat 1212.068 kb on + strandat 1212.073 kb on + strandat 1212.073 kb on + strandat 1212.076 kb on - strandat 1212.076 kb on - strandat 1212.081 kb on - strandat 1212.081 kb on - strandat 1212.081 kb on - strandat 1212.140 kb on + strand, within B158DRAFT_1172at 1212.147 kb on + strand, within B158DRAFT_1172at 1212.155 kb on - strand, within B158DRAFT_1172

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.00390625 mg/ml
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1,210,471 + -0.3
1,210,471 + -0.2
1,210,479 - +0.1
1,210,487 + -0.2
1,210,487 + -0.3
1,210,487 + -0.3
1,210,487 + -0.6
1,210,487 + +0.2
1,210,489 + +0.4
1,210,604 + +0.0
1,210,604 + -0.6
1,210,604 + -0.2
1,210,604 + -0.5
1,210,612 - +0.1
1,210,612 - -0.1
1,210,612 - -0.1
1,210,708 - B158DRAFT_1170 0.11 -0.3
1,210,796 + B158DRAFT_1170 0.24 -0.1
1,210,796 + B158DRAFT_1170 0.24 +0.3
1,210,804 - B158DRAFT_1170 0.25 +0.4
1,210,804 - B158DRAFT_1170 0.25 -0.1
1,210,804 - B158DRAFT_1170 0.25 -0.1
1,210,822 - B158DRAFT_1170 0.28 -0.3
1,210,904 + B158DRAFT_1170 0.41 -0.1
1,210,910 + B158DRAFT_1170 0.41 -0.3
1,210,918 - B158DRAFT_1170 0.43 -0.3
1,210,967 + B158DRAFT_1170 0.50 -0.3
1,210,975 - B158DRAFT_1170 0.51 -0.2
1,210,979 + B158DRAFT_1170 0.52 -1.2
1,210,979 + B158DRAFT_1170 0.52 -0.2
1,211,023 - B158DRAFT_1170 0.59 +0.2
1,211,033 + B158DRAFT_1170 0.60 -0.7
1,211,078 + B158DRAFT_1170 0.67 -0.4
1,211,078 + B158DRAFT_1170 0.67 -0.6
1,211,083 + B158DRAFT_1170 0.68 -0.4
1,211,083 + B158DRAFT_1170 0.68 -0.0
1,211,083 + B158DRAFT_1170 0.68 +0.7
1,211,086 - B158DRAFT_1170 0.68 +0.1
1,211,086 - B158DRAFT_1170 0.68 -0.4
1,211,091 - B158DRAFT_1170 0.69 +0.7
1,211,217 - B158DRAFT_1170 0.88 -0.2
1,211,252 + +0.3
1,211,253 + +0.3
1,211,276 - -0.5
1,211,321 - -0.1
1,211,334 + -0.1
1,211,334 + +0.9
1,211,342 - B158DRAFT_1171 0.10 +0.1
1,211,344 + B158DRAFT_1171 0.10 +0.6
1,211,352 - B158DRAFT_1171 0.12 +0.8
1,211,352 - B158DRAFT_1171 0.12 +0.2
1,211,394 + B158DRAFT_1171 0.21 -1.0
1,211,431 + B158DRAFT_1171 0.29 +0.3
1,211,431 + B158DRAFT_1171 0.29 +0.0
1,211,431 + B158DRAFT_1171 0.29 -0.1
1,211,431 + B158DRAFT_1171 0.29 +0.3
1,211,439 - B158DRAFT_1171 0.30 +0.6
1,211,439 - B158DRAFT_1171 0.30 +0.2
1,211,439 - B158DRAFT_1171 0.30 -0.0
1,211,439 - B158DRAFT_1171 0.30 +0.4
1,211,439 - B158DRAFT_1171 0.30 +0.3
1,211,439 - B158DRAFT_1171 0.30 +0.3
1,211,464 - B158DRAFT_1171 0.36 +0.2
1,211,512 + B158DRAFT_1171 0.46 -0.2
1,211,512 + B158DRAFT_1171 0.46 +0.3
1,211,520 - B158DRAFT_1171 0.47 -0.4
1,211,520 - B158DRAFT_1171 0.47 +0.3
1,211,526 + B158DRAFT_1171 0.49 +0.2
1,211,534 - B158DRAFT_1171 0.50 -0.7
1,211,681 + B158DRAFT_1171 0.81 -0.4
1,211,681 + B158DRAFT_1171 0.81 -0.0
1,211,689 - B158DRAFT_1171 0.83 +0.0
1,211,738 + +0.5
1,211,741 - +0.1
1,211,745 + +0.1
1,211,788 + +1.4
1,211,796 - +0.6
1,211,799 + +0.6
1,211,831 - -0.1
1,211,993 - -0.2
1,212,009 + -0.1
1,212,009 + +0.0
1,212,012 - -0.3
1,212,014 + -0.3
1,212,017 - -0.4
1,212,066 + +0.6
1,212,066 - -0.5
1,212,066 - -1.0
1,212,068 + +0.1
1,212,073 + -0.1
1,212,073 + +0.2
1,212,076 - -0.4
1,212,076 - +0.1
1,212,081 - +0.6
1,212,081 - -0.2
1,212,081 - -0.0
1,212,140 + B158DRAFT_1172 0.11 +0.0
1,212,147 + B158DRAFT_1172 0.12 -0.1
1,212,155 - B158DRAFT_1172 0.12 +0.0

Or see this region's nucleotide sequence