Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2183

Experiment: m.b. Paraquat dichloride 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2181 and B158DRAFT_2182 are separated by 149 nucleotidesB158DRAFT_2182 and B158DRAFT_2183 are separated by 154 nucleotidesB158DRAFT_2183 and B158DRAFT_2184 are separated by 179 nucleotides B158DRAFT_2181: B158DRAFT_2181 - Negative regulator of sigma E activity, at 328,361 to 329,041 _2181 B158DRAFT_2182: B158DRAFT_2182 - positive regulator of sigma(E), RseC/MucC, at 329,191 to 329,682 _2182 B158DRAFT_2183: B158DRAFT_2183 - periplasmic serine protease, Do/DeqQ family, at 329,837 to 331,138 _2183 B158DRAFT_2184: B158DRAFT_2184 - GTP-binding protein LepA, at 331,318 to 333,126 _2184 Position (kb) 329 330 331 332Strain fitness (log2 ratio) -3 -2 -1 0 1at 328.947 kb on - strand, within B158DRAFT_2181at 328.981 kb on + strandat 329.083 kb on + strandat 329.201 kb on + strandat 329.561 kb on + strand, within B158DRAFT_2182at 329.596 kb on + strand, within B158DRAFT_2182at 329.671 kb on + strandat 329.691 kb on - strandat 329.839 kb on - strandat 329.864 kb on + strandat 329.967 kb on - strandat 329.980 kb on + strand, within B158DRAFT_2183at 329.988 kb on - strand, within B158DRAFT_2183at 329.988 kb on - strand, within B158DRAFT_2183at 329.988 kb on - strand, within B158DRAFT_2183at 330.011 kb on - strand, within B158DRAFT_2183at 330.016 kb on + strand, within B158DRAFT_2183at 330.031 kb on - strand, within B158DRAFT_2183at 330.031 kb on - strand, within B158DRAFT_2183at 330.032 kb on - strand, within B158DRAFT_2183at 330.099 kb on + strand, within B158DRAFT_2183at 330.107 kb on - strand, within B158DRAFT_2183at 330.124 kb on + strand, within B158DRAFT_2183at 330.124 kb on + strand, within B158DRAFT_2183at 330.132 kb on - strand, within B158DRAFT_2183at 330.132 kb on - strand, within B158DRAFT_2183at 330.137 kb on - strand, within B158DRAFT_2183at 330.144 kb on - strand, within B158DRAFT_2183at 330.147 kb on + strand, within B158DRAFT_2183at 330.162 kb on + strand, within B158DRAFT_2183at 330.207 kb on + strand, within B158DRAFT_2183at 330.207 kb on + strand, within B158DRAFT_2183at 330.231 kb on + strand, within B158DRAFT_2183at 330.304 kb on + strand, within B158DRAFT_2183at 330.307 kb on - strand, within B158DRAFT_2183at 330.309 kb on + strand, within B158DRAFT_2183at 330.317 kb on - strand, within B158DRAFT_2183at 330.317 kb on - strand, within B158DRAFT_2183at 330.317 kb on - strand, within B158DRAFT_2183at 330.317 kb on - strand, within B158DRAFT_2183at 330.393 kb on - strand, within B158DRAFT_2183at 330.395 kb on + strand, within B158DRAFT_2183at 330.413 kb on - strand, within B158DRAFT_2183at 330.413 kb on - strand, within B158DRAFT_2183at 330.532 kb on + strand, within B158DRAFT_2183at 330.546 kb on + strand, within B158DRAFT_2183at 330.555 kb on - strand, within B158DRAFT_2183at 330.572 kb on + strand, within B158DRAFT_2183at 330.572 kb on + strand, within B158DRAFT_2183at 330.572 kb on + strand, within B158DRAFT_2183at 330.577 kb on + strand, within B158DRAFT_2183at 330.577 kb on + strand, within B158DRAFT_2183at 330.577 kb on + strand, within B158DRAFT_2183at 330.577 kb on + strand, within B158DRAFT_2183at 330.580 kb on - strand, within B158DRAFT_2183at 330.580 kb on - strand, within B158DRAFT_2183at 330.580 kb on - strand, within B158DRAFT_2183at 330.580 kb on - strand, within B158DRAFT_2183at 330.585 kb on - strand, within B158DRAFT_2183at 330.590 kb on - strand, within B158DRAFT_2183at 330.635 kb on - strand, within B158DRAFT_2183at 330.662 kb on + strand, within B158DRAFT_2183at 330.662 kb on + strand, within B158DRAFT_2183at 330.663 kb on + strand, within B158DRAFT_2183at 330.663 kb on + strand, within B158DRAFT_2183at 330.670 kb on + strand, within B158DRAFT_2183at 330.671 kb on - strand, within B158DRAFT_2183at 330.671 kb on - strand, within B158DRAFT_2183at 330.671 kb on - strand, within B158DRAFT_2183at 330.697 kb on + strand, within B158DRAFT_2183at 330.697 kb on + strand, within B158DRAFT_2183at 330.697 kb on + strand, within B158DRAFT_2183at 330.697 kb on + strand, within B158DRAFT_2183at 330.697 kb on + strand, within B158DRAFT_2183at 330.697 kb on + strand, within B158DRAFT_2183at 330.705 kb on - strand, within B158DRAFT_2183at 330.705 kb on - strand, within B158DRAFT_2183at 330.716 kb on + strand, within B158DRAFT_2183at 330.716 kb on + strand, within B158DRAFT_2183at 330.721 kb on + strand, within B158DRAFT_2183at 330.724 kb on - strand, within B158DRAFT_2183at 330.729 kb on - strand, within B158DRAFT_2183at 330.812 kb on + strand, within B158DRAFT_2183at 330.854 kb on + strand, within B158DRAFT_2183at 330.854 kb on + strand, within B158DRAFT_2183at 330.862 kb on - strand, within B158DRAFT_2183at 330.919 kb on + strand, within B158DRAFT_2183at 330.927 kb on + strand, within B158DRAFT_2183at 330.950 kb on + strand, within B158DRAFT_2183at 331.034 kb on - strandat 331.092 kb on - strandat 331.093 kb on - strandat 331.099 kb on + strandat 331.102 kb on - strandat 331.107 kb on - strandat 331.107 kb on - strandat 331.133 kb on + strandat 331.141 kb on - strandat 331.167 kb on + strandat 331.167 kb on + strandat 331.167 kb on + strandat 331.172 kb on + strandat 331.175 kb on - strandat 331.175 kb on - strandat 331.243 kb on + strandat 331.297 kb on + strandat 331.297 kb on + strandat 331.313 kb on + strandat 331.315 kb on + strandat 331.320 kb on + strandat 331.333 kb on - strandat 331.404 kb on + strandat 331.414 kb on + strandat 331.459 kb on + strandat 331.469 kb on - strandat 331.497 kb on + strandat 331.499 kb on + strand, within B158DRAFT_2184at 331.499 kb on + strand, within B158DRAFT_2184at 331.504 kb on + strand, within B158DRAFT_2184at 331.507 kb on - strand, within B158DRAFT_2184at 331.540 kb on + strand, within B158DRAFT_2184at 331.559 kb on + strand, within B158DRAFT_2184at 331.559 kb on + strand, within B158DRAFT_2184at 331.654 kb on + strand, within B158DRAFT_2184at 331.741 kb on + strand, within B158DRAFT_2184at 331.801 kb on + strand, within B158DRAFT_2184at 331.801 kb on + strand, within B158DRAFT_2184at 331.801 kb on + strand, within B158DRAFT_2184at 331.872 kb on + strand, within B158DRAFT_2184at 331.872 kb on + strand, within B158DRAFT_2184at 331.894 kb on + strand, within B158DRAFT_2184at 331.894 kb on + strand, within B158DRAFT_2184at 332.118 kb on + strand, within B158DRAFT_2184at 332.124 kb on + strand, within B158DRAFT_2184at 332.134 kb on + strand, within B158DRAFT_2184

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0078125 mg/ml
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328,947 - B158DRAFT_2181 0.86 +0.6
328,981 + +0.1
329,083 + +0.1
329,201 + -1.2
329,561 + B158DRAFT_2182 0.75 -2.1
329,596 + B158DRAFT_2182 0.82 -1.2
329,671 + -0.6
329,691 - -0.4
329,839 - -0.4
329,864 + -0.1
329,967 - +0.8
329,980 + B158DRAFT_2183 0.11 -0.1
329,988 - B158DRAFT_2183 0.12 +0.5
329,988 - B158DRAFT_2183 0.12 -0.6
329,988 - B158DRAFT_2183 0.12 -0.0
330,011 - B158DRAFT_2183 0.13 +0.3
330,016 + B158DRAFT_2183 0.14 -0.1
330,031 - B158DRAFT_2183 0.15 +0.1
330,031 - B158DRAFT_2183 0.15 +0.3
330,032 - B158DRAFT_2183 0.15 -0.5
330,099 + B158DRAFT_2183 0.20 +0.2
330,107 - B158DRAFT_2183 0.21 -0.4
330,124 + B158DRAFT_2183 0.22 -0.3
330,124 + B158DRAFT_2183 0.22 -0.7
330,132 - B158DRAFT_2183 0.23 +0.1
330,132 - B158DRAFT_2183 0.23 -0.2
330,137 - B158DRAFT_2183 0.23 -0.5
330,144 - B158DRAFT_2183 0.24 +0.2
330,147 + B158DRAFT_2183 0.24 -0.7
330,162 + B158DRAFT_2183 0.25 -0.5
330,207 + B158DRAFT_2183 0.28 -0.3
330,207 + B158DRAFT_2183 0.28 -0.7
330,231 + B158DRAFT_2183 0.30 -0.6
330,304 + B158DRAFT_2183 0.36 +0.2
330,307 - B158DRAFT_2183 0.36 -0.1
330,309 + B158DRAFT_2183 0.36 +0.0
330,317 - B158DRAFT_2183 0.37 +0.2
330,317 - B158DRAFT_2183 0.37 -0.0
330,317 - B158DRAFT_2183 0.37 -0.1
330,317 - B158DRAFT_2183 0.37 +0.3
330,393 - B158DRAFT_2183 0.43 +0.3
330,395 + B158DRAFT_2183 0.43 -1.7
330,413 - B158DRAFT_2183 0.44 -0.3
330,413 - B158DRAFT_2183 0.44 -0.3
330,532 + B158DRAFT_2183 0.53 -0.6
330,546 + B158DRAFT_2183 0.54 -0.5
330,555 - B158DRAFT_2183 0.55 -0.2
330,572 + B158DRAFT_2183 0.56 +0.6
330,572 + B158DRAFT_2183 0.56 +0.2
330,572 + B158DRAFT_2183 0.56 -0.6
330,577 + B158DRAFT_2183 0.57 +0.2
330,577 + B158DRAFT_2183 0.57 -0.2
330,577 + B158DRAFT_2183 0.57 +0.2
330,577 + B158DRAFT_2183 0.57 -0.1
330,580 - B158DRAFT_2183 0.57 -0.5
330,580 - B158DRAFT_2183 0.57 +0.1
330,580 - B158DRAFT_2183 0.57 -0.6
330,580 - B158DRAFT_2183 0.57 -0.8
330,585 - B158DRAFT_2183 0.57 -0.9
330,590 - B158DRAFT_2183 0.58 +0.2
330,635 - B158DRAFT_2183 0.61 +0.9
330,662 + B158DRAFT_2183 0.63 -0.8
330,662 + B158DRAFT_2183 0.63 +0.7
330,663 + B158DRAFT_2183 0.63 +0.2
330,663 + B158DRAFT_2183 0.63 +0.2
330,670 + B158DRAFT_2183 0.64 -0.2
330,671 - B158DRAFT_2183 0.64 -0.2
330,671 - B158DRAFT_2183 0.64 -0.8
330,671 - B158DRAFT_2183 0.64 +0.0
330,697 + B158DRAFT_2183 0.66 -0.4
330,697 + B158DRAFT_2183 0.66 -0.5
330,697 + B158DRAFT_2183 0.66 -0.3
330,697 + B158DRAFT_2183 0.66 -0.6
330,697 + B158DRAFT_2183 0.66 -0.6
330,697 + B158DRAFT_2183 0.66 +0.0
330,705 - B158DRAFT_2183 0.67 -0.3
330,705 - B158DRAFT_2183 0.67 +0.4
330,716 + B158DRAFT_2183 0.68 -2.8
330,716 + B158DRAFT_2183 0.68 +0.2
330,721 + B158DRAFT_2183 0.68 -0.1
330,724 - B158DRAFT_2183 0.68 -0.2
330,729 - B158DRAFT_2183 0.69 +0.0
330,812 + B158DRAFT_2183 0.75 -0.8
330,854 + B158DRAFT_2183 0.78 +0.1
330,854 + B158DRAFT_2183 0.78 -0.3
330,862 - B158DRAFT_2183 0.79 +0.0
330,919 + B158DRAFT_2183 0.83 -0.1
330,927 + B158DRAFT_2183 0.84 +0.4
330,950 + B158DRAFT_2183 0.85 -0.3
331,034 - -0.3
331,092 - -0.7
331,093 - +0.4
331,099 + -0.6
331,102 - +0.3
331,107 - -0.2
331,107 - -0.3
331,133 + -0.2
331,141 - -0.0
331,167 + +0.2
331,167 + -1.0
331,167 + -0.1
331,172 + -0.0
331,175 - -1.0
331,175 - +0.2
331,243 + +1.2
331,297 + +0.7
331,297 + -0.1
331,313 + +1.7
331,315 + +0.6
331,320 + -0.1
331,333 - -1.6
331,404 + +0.2
331,414 + +0.0
331,459 + -0.0
331,469 - -1.6
331,497 + +0.2
331,499 + B158DRAFT_2184 0.10 +1.2
331,499 + B158DRAFT_2184 0.10 -0.8
331,504 + B158DRAFT_2184 0.10 +0.3
331,507 - B158DRAFT_2184 0.10 -1.6
331,540 + B158DRAFT_2184 0.12 +0.7
331,559 + B158DRAFT_2184 0.13 +0.4
331,559 + B158DRAFT_2184 0.13 +0.2
331,654 + B158DRAFT_2184 0.19 +1.0
331,741 + B158DRAFT_2184 0.23 +0.3
331,801 + B158DRAFT_2184 0.27 +0.7
331,801 + B158DRAFT_2184 0.27 +0.2
331,801 + B158DRAFT_2184 0.27 +0.1
331,872 + B158DRAFT_2184 0.31 +1.1
331,872 + B158DRAFT_2184 0.31 +0.2
331,894 + B158DRAFT_2184 0.32 -0.8
331,894 + B158DRAFT_2184 0.32 +0.5
332,118 + B158DRAFT_2184 0.44 +0.6
332,124 + B158DRAFT_2184 0.45 +0.5
332,134 + B158DRAFT_2184 0.45 +0.7

Or see this region's nucleotide sequence