Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0264

Experiment: m.b. Paraquat dichloride 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0262 and B158DRAFT_0263 are separated by 98 nucleotidesB158DRAFT_0263 and B158DRAFT_0264 are separated by 128 nucleotidesB158DRAFT_0264 and B158DRAFT_0265 are separated by 365 nucleotidesB158DRAFT_0265 and B158DRAFT_0266 are separated by 6 nucleotides B158DRAFT_0262: B158DRAFT_0262 - hypothetical protein, at 268,544 to 269,149 _0262 B158DRAFT_0263: B158DRAFT_0263 - Predicted redox protein, regulator of disulfide bond formation, at 269,248 to 269,646 _0263 B158DRAFT_0264: B158DRAFT_0264 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 269,775 to 270,410 _0264 B158DRAFT_0265: B158DRAFT_0265 - Predicted endonuclease containing a URI domain, at 270,776 to 271,084 _0265 B158DRAFT_0266: B158DRAFT_0266 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 271,091 to 271,951 _0266 Position (kb) 269 270 271Strain fitness (log2 ratio) -2 -1 0 1at 268.804 kb on - strand, within B158DRAFT_0262at 268.829 kb on + strand, within B158DRAFT_0262at 268.887 kb on + strand, within B158DRAFT_0262at 268.887 kb on + strand, within B158DRAFT_0262at 268.918 kb on + strand, within B158DRAFT_0262at 268.918 kb on + strand, within B158DRAFT_0262at 268.918 kb on + strand, within B158DRAFT_0262at 268.926 kb on - strand, within B158DRAFT_0262at 268.926 kb on - strand, within B158DRAFT_0262at 268.926 kb on - strand, within B158DRAFT_0262at 269.017 kb on + strand, within B158DRAFT_0262at 269.022 kb on + strand, within B158DRAFT_0262at 269.030 kb on - strand, within B158DRAFT_0262at 269.030 kb on - strand, within B158DRAFT_0262at 269.035 kb on - strand, within B158DRAFT_0262at 269.187 kb on + strandat 269.187 kb on + strandat 269.325 kb on - strand, within B158DRAFT_0263at 269.430 kb on - strand, within B158DRAFT_0263at 269.528 kb on - strand, within B158DRAFT_0263at 269.619 kb on + strandat 269.629 kb on + strandat 269.636 kb on - strandat 269.636 kb on - strandat 269.637 kb on - strandat 269.637 kb on - strandat 269.723 kb on - strandat 269.791 kb on - strandat 269.801 kb on + strandat 270.028 kb on - strand, within B158DRAFT_0264at 270.030 kb on + strand, within B158DRAFT_0264at 270.030 kb on + strand, within B158DRAFT_0264at 270.038 kb on - strand, within B158DRAFT_0264at 270.150 kb on - strand, within B158DRAFT_0264at 270.259 kb on - strand, within B158DRAFT_0264at 270.264 kb on - strand, within B158DRAFT_0264at 270.272 kb on + strand, within B158DRAFT_0264at 270.272 kb on + strand, within B158DRAFT_0264at 270.272 kb on + strand, within B158DRAFT_0264at 270.280 kb on - strand, within B158DRAFT_0264at 270.280 kb on - strand, within B158DRAFT_0264at 270.334 kb on - strand, within B158DRAFT_0264at 270.676 kb on + strandat 270.676 kb on + strandat 270.684 kb on - strandat 270.684 kb on - strandat 270.712 kb on - strandat 270.828 kb on + strand, within B158DRAFT_0265at 270.828 kb on + strand, within B158DRAFT_0265at 270.836 kb on - strand, within B158DRAFT_0265at 270.893 kb on + strand, within B158DRAFT_0265at 271.071 kb on - strandat 271.079 kb on + strandat 271.089 kb on + strandat 271.203 kb on + strand, within B158DRAFT_0266at 271.251 kb on + strand, within B158DRAFT_0266at 271.259 kb on + strand, within B158DRAFT_0266at 271.259 kb on - strand, within B158DRAFT_0266at 271.330 kb on - strand, within B158DRAFT_0266at 271.368 kb on - strand, within B158DRAFT_0266at 271.395 kb on - strand, within B158DRAFT_0266

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0078125 mg/ml
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268,804 - B158DRAFT_0262 0.43 +0.7
268,829 + B158DRAFT_0262 0.47 -0.6
268,887 + B158DRAFT_0262 0.57 -0.1
268,887 + B158DRAFT_0262 0.57 -0.6
268,918 + B158DRAFT_0262 0.62 -0.2
268,918 + B158DRAFT_0262 0.62 -0.5
268,918 + B158DRAFT_0262 0.62 -0.2
268,926 - B158DRAFT_0262 0.63 +0.2
268,926 - B158DRAFT_0262 0.63 -0.3
268,926 - B158DRAFT_0262 0.63 +0.0
269,017 + B158DRAFT_0262 0.78 -0.6
269,022 + B158DRAFT_0262 0.79 +0.2
269,030 - B158DRAFT_0262 0.80 +0.2
269,030 - B158DRAFT_0262 0.80 -0.2
269,035 - B158DRAFT_0262 0.81 +0.6
269,187 + -0.2
269,187 + +0.2
269,325 - B158DRAFT_0263 0.19 -0.8
269,430 - B158DRAFT_0263 0.46 -0.4
269,528 - B158DRAFT_0263 0.70 -2.0
269,619 + -0.3
269,629 + -0.5
269,636 - -0.7
269,636 - -1.2
269,637 - -0.1
269,637 - +0.8
269,723 - +0.0
269,791 - -1.1
269,801 + -1.5
270,028 - B158DRAFT_0264 0.40 +0.5
270,030 + B158DRAFT_0264 0.40 +0.4
270,030 + B158DRAFT_0264 0.40 -0.3
270,038 - B158DRAFT_0264 0.41 -0.5
270,150 - B158DRAFT_0264 0.59 -0.2
270,259 - B158DRAFT_0264 0.76 -0.5
270,264 - B158DRAFT_0264 0.77 -0.1
270,272 + B158DRAFT_0264 0.78 -0.2
270,272 + B158DRAFT_0264 0.78 -0.4
270,272 + B158DRAFT_0264 0.78 +1.0
270,280 - B158DRAFT_0264 0.79 -0.7
270,280 - B158DRAFT_0264 0.79 -0.3
270,334 - B158DRAFT_0264 0.88 +0.8
270,676 + +0.1
270,676 + +0.4
270,684 - +0.6
270,684 - +0.5
270,712 - -0.7
270,828 + B158DRAFT_0265 0.17 -0.9
270,828 + B158DRAFT_0265 0.17 -0.3
270,836 - B158DRAFT_0265 0.19 +0.0
270,893 + B158DRAFT_0265 0.38 -0.6
271,071 - -0.0
271,079 + -0.6
271,089 + +0.2
271,203 + B158DRAFT_0266 0.13 +1.0
271,251 + B158DRAFT_0266 0.19 +0.5
271,259 + B158DRAFT_0266 0.20 +0.4
271,259 - B158DRAFT_0266 0.20 -0.2
271,330 - B158DRAFT_0266 0.28 -0.4
271,368 - B158DRAFT_0266 0.32 -0.4
271,395 - B158DRAFT_0266 0.35 +1.5

Or see this region's nucleotide sequence