Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1925

Experiment: m.b. Cobalt chloride 0.625 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1923 and B158DRAFT_1924 are separated by 93 nucleotidesB158DRAFT_1924 and B158DRAFT_1925 are separated by 49 nucleotidesB158DRAFT_1925 and B158DRAFT_1926 are separated by 18 nucleotidesB158DRAFT_1926 and B158DRAFT_1927 are separated by 33 nucleotides B158DRAFT_1923: B158DRAFT_1923 - hypothetical protein, at 59,692 to 60,450 _1923 B158DRAFT_1924: B158DRAFT_1924 - Methyltransferase domain., at 60,544 to 61,176 _1924 B158DRAFT_1925: B158DRAFT_1925 - ATPase components of ABC transporters with duplicated ATPase domains, at 61,226 to 63,136 _1925 B158DRAFT_1926: B158DRAFT_1926 - Uncharacterized protein conserved in bacteria, at 63,155 to 63,748 _1926 B158DRAFT_1927: B158DRAFT_1927 - hypothetical protein, at 63,782 to 64,213 _1927 Position (kb) 61 62 63 64Strain fitness (log2 ratio) -2 -1 0 1at 60.377 kb on + strandat 60.381 kb on + strandat 60.466 kb on + strandat 60.466 kb on + strandat 60.466 kb on + strandat 60.474 kb on - strandat 60.474 kb on - strandat 60.474 kb on - strandat 60.474 kb on - strandat 60.542 kb on + strandat 60.542 kb on + strandat 60.550 kb on - strandat 60.623 kb on - strand, within B158DRAFT_1924at 60.721 kb on + strand, within B158DRAFT_1924at 60.731 kb on + strand, within B158DRAFT_1924at 60.739 kb on - strand, within B158DRAFT_1924at 60.863 kb on - strand, within B158DRAFT_1924at 60.912 kb on - strand, within B158DRAFT_1924at 60.990 kb on - strand, within B158DRAFT_1924at 61.018 kb on + strand, within B158DRAFT_1924at 61.050 kb on + strand, within B158DRAFT_1924at 61.109 kb on + strand, within B158DRAFT_1924at 61.117 kb on - strandat 61.153 kb on - strandat 61.166 kb on + strandat 61.172 kb on - strandat 61.172 kb on - strandat 61.174 kb on - strandat 61.179 kb on - strandat 61.269 kb on + strandat 61.269 kb on + strandat 61.269 kb on + strandat 61.269 kb on + strandat 61.269 kb on + strandat 61.269 kb on + strandat 61.269 kb on + strandat 61.274 kb on + strandat 61.274 kb on + strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.282 kb on - strandat 61.287 kb on - strandat 61.418 kb on + strand, within B158DRAFT_1925at 61.438 kb on + strand, within B158DRAFT_1925at 61.462 kb on + strand, within B158DRAFT_1925at 61.502 kb on - strand, within B158DRAFT_1925at 61.511 kb on + strand, within B158DRAFT_1925at 61.519 kb on - strand, within B158DRAFT_1925at 61.541 kb on - strand, within B158DRAFT_1925at 61.573 kb on + strand, within B158DRAFT_1925at 61.573 kb on + strand, within B158DRAFT_1925at 61.573 kb on + strand, within B158DRAFT_1925at 61.581 kb on - strand, within B158DRAFT_1925at 61.581 kb on - strand, within B158DRAFT_1925at 61.581 kb on - strand, within B158DRAFT_1925at 61.581 kb on - strand, within B158DRAFT_1925at 61.581 kb on - strand, within B158DRAFT_1925at 61.611 kb on + strand, within B158DRAFT_1925at 61.692 kb on - strand, within B158DRAFT_1925at 61.692 kb on - strand, within B158DRAFT_1925at 61.714 kb on - strand, within B158DRAFT_1925at 61.720 kb on + strand, within B158DRAFT_1925at 61.722 kb on - strand, within B158DRAFT_1925at 61.817 kb on + strand, within B158DRAFT_1925at 61.825 kb on - strand, within B158DRAFT_1925at 61.949 kb on + strand, within B158DRAFT_1925at 62.015 kb on + strand, within B158DRAFT_1925at 62.037 kb on - strand, within B158DRAFT_1925at 62.037 kb on - strand, within B158DRAFT_1925at 62.074 kb on + strand, within B158DRAFT_1925at 62.074 kb on + strand, within B158DRAFT_1925at 62.082 kb on - strand, within B158DRAFT_1925at 62.087 kb on + strand, within B158DRAFT_1925at 62.106 kb on + strand, within B158DRAFT_1925at 62.114 kb on - strand, within B158DRAFT_1925at 62.114 kb on - strand, within B158DRAFT_1925at 62.204 kb on + strand, within B158DRAFT_1925at 62.205 kb on + strand, within B158DRAFT_1925at 62.289 kb on - strand, within B158DRAFT_1925at 62.289 kb on - strand, within B158DRAFT_1925at 62.338 kb on + strand, within B158DRAFT_1925at 62.346 kb on - strand, within B158DRAFT_1925at 62.346 kb on - strand, within B158DRAFT_1925at 62.387 kb on + strand, within B158DRAFT_1925at 62.388 kb on - strand, within B158DRAFT_1925at 62.433 kb on - strand, within B158DRAFT_1925at 62.446 kb on - strand, within B158DRAFT_1925at 62.471 kb on - strand, within B158DRAFT_1925at 62.479 kb on - strand, within B158DRAFT_1925at 62.555 kb on + strand, within B158DRAFT_1925at 62.555 kb on + strand, within B158DRAFT_1925at 62.605 kb on + strand, within B158DRAFT_1925at 62.637 kb on + strand, within B158DRAFT_1925at 62.645 kb on - strand, within B158DRAFT_1925at 62.645 kb on - strand, within B158DRAFT_1925at 62.645 kb on - strand, within B158DRAFT_1925at 62.662 kb on + strand, within B158DRAFT_1925at 62.689 kb on + strand, within B158DRAFT_1925at 62.728 kb on - strand, within B158DRAFT_1925at 62.753 kb on + strand, within B158DRAFT_1925at 62.759 kb on + strand, within B158DRAFT_1925at 62.767 kb on - strand, within B158DRAFT_1925at 62.858 kb on + strand, within B158DRAFT_1925at 63.065 kb on - strandat 63.067 kb on + strandat 63.075 kb on - strandat 63.077 kb on + strandat 63.150 kb on + strandat 63.245 kb on - strand, within B158DRAFT_1926at 63.276 kb on - strand, within B158DRAFT_1926at 63.298 kb on + strand, within B158DRAFT_1926at 63.298 kb on + strand, within B158DRAFT_1926at 63.443 kb on + strand, within B158DRAFT_1926at 63.459 kb on - strand, within B158DRAFT_1926at 63.535 kb on - strand, within B158DRAFT_1926at 63.535 kb on - strand, within B158DRAFT_1926at 63.535 kb on - strand, within B158DRAFT_1926at 63.541 kb on + strand, within B158DRAFT_1926at 63.663 kb on + strand, within B158DRAFT_1926at 63.736 kb on - strandat 63.829 kb on + strand, within B158DRAFT_1927at 63.837 kb on - strand, within B158DRAFT_1927at 63.837 kb on - strand, within B158DRAFT_1927at 63.881 kb on - strand, within B158DRAFT_1927at 63.881 kb on - strand, within B158DRAFT_1927at 63.881 kb on - strand, within B158DRAFT_1927at 63.881 kb on - strand, within B158DRAFT_1927at 63.995 kb on - strand, within B158DRAFT_1927at 64.054 kb on + strand, within B158DRAFT_1927

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.625 mM
remove
60,377 + -2.1
60,381 + -1.8
60,466 + -0.3
60,466 + -0.6
60,466 + +0.1
60,474 - +0.2
60,474 - -0.3
60,474 - -0.3
60,474 - -0.1
60,542 + -0.4
60,542 + -0.1
60,550 - -0.3
60,623 - B158DRAFT_1924 0.12 -0.1
60,721 + B158DRAFT_1924 0.28 +0.1
60,731 + B158DRAFT_1924 0.30 +0.1
60,739 - B158DRAFT_1924 0.31 +0.0
60,863 - B158DRAFT_1924 0.50 -0.4
60,912 - B158DRAFT_1924 0.58 -0.4
60,990 - B158DRAFT_1924 0.70 -0.3
61,018 + B158DRAFT_1924 0.75 -0.1
61,050 + B158DRAFT_1924 0.80 -0.3
61,109 + B158DRAFT_1924 0.89 -0.9
61,117 - +0.6
61,153 - +0.1
61,166 + -0.4
61,172 - -0.6
61,172 - -0.2
61,174 - -0.4
61,179 - -0.6
61,269 + -1.4
61,269 + -0.7
61,269 + -0.9
61,269 + -0.3
61,269 + -0.5
61,269 + -0.6
61,269 + -0.5
61,274 + -0.7
61,274 + -0.6
61,277 - -1.5
61,277 - -0.8
61,277 - -0.9
61,277 - -0.9
61,277 - -1.0
61,277 - +0.3
61,277 - -0.9
61,277 - -0.3
61,277 - +0.1
61,277 - +0.7
61,277 - +0.3
61,282 - -0.9
61,287 - -0.5
61,418 + B158DRAFT_1925 0.10 -0.5
61,438 + B158DRAFT_1925 0.11 -1.4
61,462 + B158DRAFT_1925 0.12 -0.9
61,502 - B158DRAFT_1925 0.14 -0.5
61,511 + B158DRAFT_1925 0.15 -0.6
61,519 - B158DRAFT_1925 0.15 -1.2
61,541 - B158DRAFT_1925 0.16 +1.0
61,573 + B158DRAFT_1925 0.18 -0.6
61,573 + B158DRAFT_1925 0.18 -0.9
61,573 + B158DRAFT_1925 0.18 +0.1
61,581 - B158DRAFT_1925 0.19 -0.8
61,581 - B158DRAFT_1925 0.19 -1.0
61,581 - B158DRAFT_1925 0.19 -0.1
61,581 - B158DRAFT_1925 0.19 -0.6
61,581 - B158DRAFT_1925 0.19 -1.0
61,611 + B158DRAFT_1925 0.20 +0.1
61,692 - B158DRAFT_1925 0.24 -1.0
61,692 - B158DRAFT_1925 0.24 +0.5
61,714 - B158DRAFT_1925 0.26 -0.7
61,720 + B158DRAFT_1925 0.26 -0.6
61,722 - B158DRAFT_1925 0.26 -0.9
61,817 + B158DRAFT_1925 0.31 -0.2
61,825 - B158DRAFT_1925 0.31 -0.7
61,949 + B158DRAFT_1925 0.38 +0.0
62,015 + B158DRAFT_1925 0.41 -0.1
62,037 - B158DRAFT_1925 0.42 +0.3
62,037 - B158DRAFT_1925 0.42 -1.4
62,074 + B158DRAFT_1925 0.44 -1.6
62,074 + B158DRAFT_1925 0.44 -1.1
62,082 - B158DRAFT_1925 0.45 -0.8
62,087 + B158DRAFT_1925 0.45 -0.7
62,106 + B158DRAFT_1925 0.46 -0.6
62,114 - B158DRAFT_1925 0.46 -0.8
62,114 - B158DRAFT_1925 0.46 +0.0
62,204 + B158DRAFT_1925 0.51 -0.9
62,205 + B158DRAFT_1925 0.51 -0.3
62,289 - B158DRAFT_1925 0.56 -0.6
62,289 - B158DRAFT_1925 0.56 -1.1
62,338 + B158DRAFT_1925 0.58 -1.1
62,346 - B158DRAFT_1925 0.59 -0.2
62,346 - B158DRAFT_1925 0.59 -0.4
62,387 + B158DRAFT_1925 0.61 -1.6
62,388 - B158DRAFT_1925 0.61 -0.4
62,433 - B158DRAFT_1925 0.63 -0.5
62,446 - B158DRAFT_1925 0.64 -1.0
62,471 - B158DRAFT_1925 0.65 -1.1
62,479 - B158DRAFT_1925 0.66 -1.6
62,555 + B158DRAFT_1925 0.70 -0.7
62,555 + B158DRAFT_1925 0.70 -0.4
62,605 + B158DRAFT_1925 0.72 -0.1
62,637 + B158DRAFT_1925 0.74 -1.0
62,645 - B158DRAFT_1925 0.74 -1.7
62,645 - B158DRAFT_1925 0.74 -0.3
62,645 - B158DRAFT_1925 0.74 -0.6
62,662 + B158DRAFT_1925 0.75 -0.3
62,689 + B158DRAFT_1925 0.77 +0.0
62,728 - B158DRAFT_1925 0.79 -0.7
62,753 + B158DRAFT_1925 0.80 -0.4
62,759 + B158DRAFT_1925 0.80 -1.5
62,767 - B158DRAFT_1925 0.81 -0.6
62,858 + B158DRAFT_1925 0.85 -0.6
63,065 - -1.2
63,067 + -0.5
63,075 - +0.1
63,077 + +0.0
63,150 + -1.4
63,245 - B158DRAFT_1926 0.15 -0.0
63,276 - B158DRAFT_1926 0.20 -0.4
63,298 + B158DRAFT_1926 0.24 -1.0
63,298 + B158DRAFT_1926 0.24 -0.3
63,443 + B158DRAFT_1926 0.48 -0.1
63,459 - B158DRAFT_1926 0.51 -0.1
63,535 - B158DRAFT_1926 0.64 -0.6
63,535 - B158DRAFT_1926 0.64 -1.4
63,535 - B158DRAFT_1926 0.64 -0.3
63,541 + B158DRAFT_1926 0.65 -0.2
63,663 + B158DRAFT_1926 0.86 -0.2
63,736 - -0.0
63,829 + B158DRAFT_1927 0.11 -0.5
63,837 - B158DRAFT_1927 0.13 -0.5
63,837 - B158DRAFT_1927 0.13 +0.1
63,881 - B158DRAFT_1927 0.23 -0.2
63,881 - B158DRAFT_1927 0.23 +0.4
63,881 - B158DRAFT_1927 0.23 -0.0
63,881 - B158DRAFT_1927 0.23 +0.3
63,995 - B158DRAFT_1927 0.49 -0.3
64,054 + B158DRAFT_1927 0.63 -0.2

Or see this region's nucleotide sequence