Experiment: m.b. Cobalt chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1124 and B158DRAFT_1125 overlap by 4 nucleotides B158DRAFT_1125 and B158DRAFT_1126 are separated by 5 nucleotides B158DRAFT_1126 and B158DRAFT_1127 are separated by 10 nucleotides
B158DRAFT_1124: B158DRAFT_1124 - Holliday junction endonuclease RuvC (EC 3.1.22.4), at 1,164,479 to 1,165,009
_1124
B158DRAFT_1125: B158DRAFT_1125 - Holliday junction DNA helicase subunit RuvA, at 1,165,006 to 1,165,623
_1125
B158DRAFT_1126: B158DRAFT_1126 - FOG: TPR repeat, SEL1 subfamily, at 1,165,629 to 1,167,098
_1126
B158DRAFT_1127: B158DRAFT_1127 - diguanylate cyclase (GGDEF) domain, at 1,167,109 to 1,168,140
_1127
Position (kb)
1165
1166
1167
1168 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1164.664 kb on + strand, within B158DRAFT_1124 at 1164.730 kb on - strand, within B158DRAFT_1124 at 1164.734 kb on + strand, within B158DRAFT_1124 at 1164.747 kb on - strand, within B158DRAFT_1124 at 1164.770 kb on + strand, within B158DRAFT_1124 at 1164.832 kb on + strand, within B158DRAFT_1124 at 1164.918 kb on - strand, within B158DRAFT_1124 at 1164.929 kb on + strand, within B158DRAFT_1124 at 1164.929 kb on + strand, within B158DRAFT_1124 at 1164.937 kb on - strand, within B158DRAFT_1124 at 1164.958 kb on - strand at 1164.959 kb on - strand at 1164.967 kb on + strand at 1164.967 kb on + strand at 1164.967 kb on + strand at 1164.967 kb on + strand at 1164.967 kb on + strand at 1164.975 kb on - strand at 1164.975 kb on - strand at 1164.975 kb on - strand at 1164.983 kb on - strand at 1165.068 kb on - strand, within B158DRAFT_1125 at 1165.070 kb on + strand, within B158DRAFT_1125 at 1165.117 kb on - strand, within B158DRAFT_1125 at 1165.161 kb on - strand, within B158DRAFT_1125 at 1165.186 kb on + strand, within B158DRAFT_1125 at 1165.210 kb on - strand, within B158DRAFT_1125 at 1165.252 kb on + strand, within B158DRAFT_1125 at 1165.260 kb on - strand, within B158DRAFT_1125 at 1165.261 kb on - strand, within B158DRAFT_1125 at 1165.289 kb on + strand, within B158DRAFT_1125 at 1165.401 kb on + strand, within B158DRAFT_1125 at 1165.429 kb on + strand, within B158DRAFT_1125 at 1165.484 kb on + strand, within B158DRAFT_1125 at 1165.561 kb on + strand, within B158DRAFT_1125 at 1165.585 kb on + strand at 1165.623 kb on + strand at 1165.623 kb on + strand at 1165.623 kb on + strand at 1165.626 kb on - strand at 1165.631 kb on - strand at 1165.631 kb on - strand at 1165.631 kb on - strand at 1165.661 kb on - strand at 1165.670 kb on - strand at 1165.775 kb on - strand at 1165.793 kb on + strand, within B158DRAFT_1126 at 1165.877 kb on - strand, within B158DRAFT_1126 at 1165.922 kb on - strand, within B158DRAFT_1126 at 1165.922 kb on - strand, within B158DRAFT_1126 at 1165.974 kb on + strand, within B158DRAFT_1126 at 1165.983 kb on + strand, within B158DRAFT_1126 at 1165.989 kb on - strand, within B158DRAFT_1126 at 1166.110 kb on + strand, within B158DRAFT_1126 at 1166.115 kb on + strand, within B158DRAFT_1126 at 1166.190 kb on + strand, within B158DRAFT_1126 at 1166.254 kb on - strand, within B158DRAFT_1126 at 1166.263 kb on + strand, within B158DRAFT_1126 at 1166.271 kb on - strand, within B158DRAFT_1126 at 1166.271 kb on - strand, within B158DRAFT_1126 at 1166.380 kb on + strand, within B158DRAFT_1126 at 1166.432 kb on - strand, within B158DRAFT_1126 at 1166.459 kb on - strand, within B158DRAFT_1126 at 1166.474 kb on + strand, within B158DRAFT_1126 at 1166.509 kb on + strand, within B158DRAFT_1126 at 1166.509 kb on + strand, within B158DRAFT_1126 at 1166.517 kb on - strand, within B158DRAFT_1126 at 1166.517 kb on - strand, within B158DRAFT_1126 at 1166.517 kb on - strand, within B158DRAFT_1126 at 1166.582 kb on + strand, within B158DRAFT_1126 at 1166.617 kb on + strand, within B158DRAFT_1126 at 1166.617 kb on - strand, within B158DRAFT_1126 at 1166.633 kb on + strand, within B158DRAFT_1126 at 1166.726 kb on + strand, within B158DRAFT_1126 at 1166.749 kb on - strand, within B158DRAFT_1126 at 1166.798 kb on + strand, within B158DRAFT_1126 at 1166.909 kb on - strand, within B158DRAFT_1126 at 1166.914 kb on - strand, within B158DRAFT_1126 at 1166.936 kb on + strand, within B158DRAFT_1126 at 1166.936 kb on + strand, within B158DRAFT_1126 at 1166.938 kb on + strand, within B158DRAFT_1126 at 1166.944 kb on - strand, within B158DRAFT_1126 at 1166.944 kb on - strand, within B158DRAFT_1126 at 1166.944 kb on - strand, within B158DRAFT_1126 at 1166.949 kb on - strand, within B158DRAFT_1126 at 1166.953 kb on + strand at 1166.953 kb on + strand at 1166.956 kb on - strand at 1166.956 kb on - strand at 1167.166 kb on + strand at 1167.166 kb on + strand at 1167.304 kb on - strand, within B158DRAFT_1127 at 1167.403 kb on + strand, within B158DRAFT_1127 at 1167.420 kb on - strand, within B158DRAFT_1127 at 1167.420 kb on - strand, within B158DRAFT_1127 at 1167.446 kb on + strand, within B158DRAFT_1127 at 1167.446 kb on + strand, within B158DRAFT_1127 at 1167.458 kb on + strand, within B158DRAFT_1127 at 1167.458 kb on + strand, within B158DRAFT_1127 at 1167.509 kb on + strand, within B158DRAFT_1127 at 1167.509 kb on + strand, within B158DRAFT_1127 at 1167.765 kb on + strand, within B158DRAFT_1127 at 1167.765 kb on + strand, within B158DRAFT_1127 at 1167.897 kb on + strand, within B158DRAFT_1127 at 1167.932 kb on + strand, within B158DRAFT_1127 at 1167.998 kb on - strand, within B158DRAFT_1127 at 1168.033 kb on + strand, within B158DRAFT_1127 at 1168.041 kb on - strand at 1168.058 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.625 mM remove 1,164,664 + B158DRAFT_1124 0.35 -1.5 1,164,730 - B158DRAFT_1124 0.47 -2.3 1,164,734 + B158DRAFT_1124 0.48 -1.3 1,164,747 - B158DRAFT_1124 0.50 -1.5 1,164,770 + B158DRAFT_1124 0.55 -2.4 1,164,832 + B158DRAFT_1124 0.66 -1.0 1,164,918 - B158DRAFT_1124 0.83 -2.3 1,164,929 + B158DRAFT_1124 0.85 -3.3 1,164,929 + B158DRAFT_1124 0.85 -2.3 1,164,937 - B158DRAFT_1124 0.86 -1.9 1,164,958 - -3.3 1,164,959 - -2.3 1,164,967 + -0.9 1,164,967 + -0.8 1,164,967 + -1.4 1,164,967 + -0.6 1,164,967 + +0.9 1,164,975 - -2.5 1,164,975 - -0.2 1,164,975 - -2.7 1,164,983 - -1.5 1,165,068 - B158DRAFT_1125 0.10 -1.0 1,165,070 + B158DRAFT_1125 0.10 -0.9 1,165,117 - B158DRAFT_1125 0.18 +0.9 1,165,161 - B158DRAFT_1125 0.25 -1.2 1,165,186 + B158DRAFT_1125 0.29 -1.7 1,165,210 - B158DRAFT_1125 0.33 -2.8 1,165,252 + B158DRAFT_1125 0.40 -2.5 1,165,260 - B158DRAFT_1125 0.41 -0.5 1,165,261 - B158DRAFT_1125 0.41 -2.1 1,165,289 + B158DRAFT_1125 0.46 -1.6 1,165,401 + B158DRAFT_1125 0.64 -1.1 1,165,429 + B158DRAFT_1125 0.68 -2.5 1,165,484 + B158DRAFT_1125 0.77 -1.4 1,165,561 + B158DRAFT_1125 0.90 -2.0 1,165,585 + -1.7 1,165,623 + -0.5 1,165,623 + +0.1 1,165,623 + -0.2 1,165,626 - -0.8 1,165,631 - -0.7 1,165,631 - -0.1 1,165,631 - -1.3 1,165,661 - +0.1 1,165,670 - -0.5 1,165,775 - -1.1 1,165,793 + B158DRAFT_1126 0.11 -0.1 1,165,877 - B158DRAFT_1126 0.17 -0.6 1,165,922 - B158DRAFT_1126 0.20 +0.4 1,165,922 - B158DRAFT_1126 0.20 -0.5 1,165,974 + B158DRAFT_1126 0.23 -0.1 1,165,983 + B158DRAFT_1126 0.24 -2.0 1,165,989 - B158DRAFT_1126 0.24 -0.1 1,166,110 + B158DRAFT_1126 0.33 -1.2 1,166,115 + B158DRAFT_1126 0.33 -0.4 1,166,190 + B158DRAFT_1126 0.38 -0.4 1,166,254 - B158DRAFT_1126 0.43 -0.5 1,166,263 + B158DRAFT_1126 0.43 -0.3 1,166,271 - B158DRAFT_1126 0.44 -0.6 1,166,271 - B158DRAFT_1126 0.44 -1.2 1,166,380 + B158DRAFT_1126 0.51 -0.3 1,166,432 - B158DRAFT_1126 0.55 -0.9 1,166,459 - B158DRAFT_1126 0.56 -0.5 1,166,474 + B158DRAFT_1126 0.57 -0.6 1,166,509 + B158DRAFT_1126 0.60 -1.7 1,166,509 + B158DRAFT_1126 0.60 +0.3 1,166,517 - B158DRAFT_1126 0.60 -0.3 1,166,517 - B158DRAFT_1126 0.60 -0.4 1,166,517 - B158DRAFT_1126 0.60 -0.3 1,166,582 + B158DRAFT_1126 0.65 -0.3 1,166,617 + B158DRAFT_1126 0.67 -0.6 1,166,617 - B158DRAFT_1126 0.67 -0.5 1,166,633 + B158DRAFT_1126 0.68 -0.4 1,166,726 + B158DRAFT_1126 0.75 -0.8 1,166,749 - B158DRAFT_1126 0.76 -0.3 1,166,798 + B158DRAFT_1126 0.80 -0.1 1,166,909 - B158DRAFT_1126 0.87 -0.2 1,166,914 - B158DRAFT_1126 0.87 -0.1 1,166,936 + B158DRAFT_1126 0.89 +0.0 1,166,936 + B158DRAFT_1126 0.89 -1.1 1,166,938 + B158DRAFT_1126 0.89 +0.3 1,166,944 - B158DRAFT_1126 0.89 -0.6 1,166,944 - B158DRAFT_1126 0.89 -0.1 1,166,944 - B158DRAFT_1126 0.89 +0.2 1,166,949 - B158DRAFT_1126 0.90 -0.6 1,166,953 + -0.1 1,166,953 + +0.4 1,166,956 - -0.3 1,166,956 - -0.7 1,167,166 + -0.1 1,167,166 + -0.4 1,167,304 - B158DRAFT_1127 0.19 -1.2 1,167,403 + B158DRAFT_1127 0.28 -0.1 1,167,420 - B158DRAFT_1127 0.30 +0.5 1,167,420 - B158DRAFT_1127 0.30 -0.0 1,167,446 + B158DRAFT_1127 0.33 -0.4 1,167,446 + B158DRAFT_1127 0.33 -0.6 1,167,458 + B158DRAFT_1127 0.34 -1.1 1,167,458 + B158DRAFT_1127 0.34 +0.4 1,167,509 + B158DRAFT_1127 0.39 -0.2 1,167,509 + B158DRAFT_1127 0.39 -0.2 1,167,765 + B158DRAFT_1127 0.64 -0.0 1,167,765 + B158DRAFT_1127 0.64 +0.3 1,167,897 + B158DRAFT_1127 0.76 -0.8 1,167,932 + B158DRAFT_1127 0.80 -0.3 1,167,998 - B158DRAFT_1127 0.86 +0.5 1,168,033 + B158DRAFT_1127 0.90 -0.4 1,168,041 - -0.2 1,168,058 - +0.2
Or see this region's nucleotide sequence