Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0723

Experiment: m.b. Cobalt chloride 0.625 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0722 and B158DRAFT_0723 are separated by 284 nucleotidesB158DRAFT_0723 and B158DRAFT_0724 are separated by 23 nucleotides B158DRAFT_0722: B158DRAFT_0722 - Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain, at 721,862 to 722,950 _0722 B158DRAFT_0723: B158DRAFT_0723 - diguanylate cyclase (GGDEF) domain, at 723,235 to 725,304 _0723 B158DRAFT_0724: B158DRAFT_0724 - diguanylate cyclase (GGDEF) domain, at 725,328 to 727,466 _0724 Position (kb) 723 724 725 726Strain fitness (log2 ratio) -2 -1 0 1 2at 722.290 kb on - strand, within B158DRAFT_0722at 722.296 kb on + strand, within B158DRAFT_0722at 722.356 kb on - strand, within B158DRAFT_0722at 722.356 kb on - strand, within B158DRAFT_0722at 722.385 kb on + strand, within B158DRAFT_0722at 722.388 kb on - strand, within B158DRAFT_0722at 722.436 kb on + strand, within B158DRAFT_0722at 722.460 kb on - strand, within B158DRAFT_0722at 722.542 kb on + strand, within B158DRAFT_0722at 722.562 kb on + strand, within B158DRAFT_0722at 722.568 kb on + strand, within B158DRAFT_0722at 722.576 kb on - strand, within B158DRAFT_0722at 722.576 kb on - strand, within B158DRAFT_0722at 722.576 kb on - strand, within B158DRAFT_0722at 722.576 kb on - strand, within B158DRAFT_0722at 722.616 kb on + strand, within B158DRAFT_0722at 722.616 kb on + strand, within B158DRAFT_0722at 722.616 kb on + strand, within B158DRAFT_0722at 722.617 kb on + strand, within B158DRAFT_0722at 722.618 kb on + strand, within B158DRAFT_0722at 722.618 kb on + strand, within B158DRAFT_0722at 722.618 kb on + strand, within B158DRAFT_0722at 722.624 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.648 kb on - strand, within B158DRAFT_0722at 722.703 kb on - strand, within B158DRAFT_0722at 722.718 kb on - strand, within B158DRAFT_0722at 722.720 kb on + strand, within B158DRAFT_0722at 722.720 kb on + strand, within B158DRAFT_0722at 722.728 kb on - strand, within B158DRAFT_0722at 722.783 kb on - strand, within B158DRAFT_0722at 722.783 kb on - strand, within B158DRAFT_0722at 722.872 kb on - strandat 722.892 kb on + strandat 722.910 kb on - strandat 722.976 kb on + strandat 723.027 kb on + strandat 723.027 kb on + strandat 723.050 kb on + strandat 723.139 kb on + strandat 723.139 kb on + strandat 723.213 kb on - strandat 723.281 kb on + strandat 723.289 kb on - strandat 723.344 kb on - strandat 723.344 kb on - strandat 723.393 kb on - strandat 723.401 kb on - strandat 723.406 kb on + strandat 723.438 kb on + strandat 723.551 kb on + strand, within B158DRAFT_0723at 723.560 kb on + strand, within B158DRAFT_0723at 723.560 kb on + strand, within B158DRAFT_0723at 723.561 kb on + strand, within B158DRAFT_0723at 723.568 kb on - strand, within B158DRAFT_0723at 723.667 kb on - strand, within B158DRAFT_0723at 723.749 kb on + strand, within B158DRAFT_0723at 723.854 kb on - strand, within B158DRAFT_0723at 723.919 kb on - strand, within B158DRAFT_0723at 723.950 kb on + strand, within B158DRAFT_0723at 723.975 kb on + strand, within B158DRAFT_0723at 723.975 kb on + strand, within B158DRAFT_0723at 723.975 kb on + strand, within B158DRAFT_0723at 723.983 kb on - strand, within B158DRAFT_0723at 723.983 kb on - strand, within B158DRAFT_0723at 724.010 kb on - strand, within B158DRAFT_0723at 724.142 kb on - strand, within B158DRAFT_0723at 724.219 kb on + strand, within B158DRAFT_0723at 724.219 kb on + strand, within B158DRAFT_0723at 724.219 kb on + strand, within B158DRAFT_0723at 724.220 kb on + strand, within B158DRAFT_0723at 724.227 kb on - strand, within B158DRAFT_0723at 724.227 kb on - strand, within B158DRAFT_0723at 724.227 kb on - strand, within B158DRAFT_0723at 724.252 kb on + strand, within B158DRAFT_0723at 724.252 kb on + strand, within B158DRAFT_0723at 724.265 kb on + strand, within B158DRAFT_0723at 724.374 kb on + strand, within B158DRAFT_0723at 724.657 kb on + strand, within B158DRAFT_0723at 724.657 kb on + strand, within B158DRAFT_0723at 724.665 kb on - strand, within B158DRAFT_0723at 724.665 kb on - strand, within B158DRAFT_0723at 724.665 kb on - strand, within B158DRAFT_0723at 724.674 kb on + strand, within B158DRAFT_0723at 724.705 kb on + strand, within B158DRAFT_0723at 724.728 kb on + strand, within B158DRAFT_0723at 724.778 kb on - strand, within B158DRAFT_0723at 725.177 kb on + strandat 725.190 kb on - strandat 725.382 kb on + strandat 725.390 kb on - strandat 725.454 kb on - strandat 725.768 kb on - strand, within B158DRAFT_0724at 725.794 kb on - strand, within B158DRAFT_0724at 725.794 kb on - strand, within B158DRAFT_0724at 725.859 kb on + strand, within B158DRAFT_0724at 726.095 kb on - strand, within B158DRAFT_0724

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.625 mM
remove
722,290 - B158DRAFT_0722 0.39 -0.0
722,296 + B158DRAFT_0722 0.40 +0.2
722,356 - B158DRAFT_0722 0.45 -1.1
722,356 - B158DRAFT_0722 0.45 -0.4
722,385 + B158DRAFT_0722 0.48 +0.1
722,388 - B158DRAFT_0722 0.48 -0.3
722,436 + B158DRAFT_0722 0.53 -0.9
722,460 - B158DRAFT_0722 0.55 +0.3
722,542 + B158DRAFT_0722 0.62 +0.0
722,562 + B158DRAFT_0722 0.64 +0.0
722,568 + B158DRAFT_0722 0.65 -0.0
722,576 - B158DRAFT_0722 0.66 -0.1
722,576 - B158DRAFT_0722 0.66 +0.1
722,576 - B158DRAFT_0722 0.66 -0.3
722,576 - B158DRAFT_0722 0.66 -0.5
722,616 + B158DRAFT_0722 0.69 -0.7
722,616 + B158DRAFT_0722 0.69 +0.7
722,616 + B158DRAFT_0722 0.69 +0.4
722,617 + B158DRAFT_0722 0.69 +0.2
722,618 + B158DRAFT_0722 0.69 +0.1
722,618 + B158DRAFT_0722 0.69 -1.2
722,618 + B158DRAFT_0722 0.69 -0.1
722,624 - B158DRAFT_0722 0.70 -0.1
722,626 - B158DRAFT_0722 0.70 +0.1
722,626 - B158DRAFT_0722 0.70 -0.4
722,626 - B158DRAFT_0722 0.70 +0.2
722,626 - B158DRAFT_0722 0.70 +0.1
722,626 - B158DRAFT_0722 0.70 -1.8
722,626 - B158DRAFT_0722 0.70 -0.1
722,648 - B158DRAFT_0722 0.72 -0.0
722,703 - B158DRAFT_0722 0.77 +0.3
722,718 - B158DRAFT_0722 0.79 -0.2
722,720 + B158DRAFT_0722 0.79 -1.0
722,720 + B158DRAFT_0722 0.79 +0.3
722,728 - B158DRAFT_0722 0.80 +0.2
722,783 - B158DRAFT_0722 0.85 -0.4
722,783 - B158DRAFT_0722 0.85 +0.3
722,872 - +0.2
722,892 + -0.3
722,910 - -0.4
722,976 + +0.2
723,027 + -0.2
723,027 + +0.1
723,050 + -0.1
723,139 + -0.2
723,139 + -0.0
723,213 - -0.5
723,281 + -0.1
723,289 - -1.2
723,344 - -0.4
723,344 - -0.4
723,393 - +0.1
723,401 - +0.3
723,406 + -0.1
723,438 + +0.7
723,551 + B158DRAFT_0723 0.15 -0.5
723,560 + B158DRAFT_0723 0.16 -0.3
723,560 + B158DRAFT_0723 0.16 -0.2
723,561 + B158DRAFT_0723 0.16 -0.4
723,568 - B158DRAFT_0723 0.16 -0.1
723,667 - B158DRAFT_0723 0.21 -0.6
723,749 + B158DRAFT_0723 0.25 -0.3
723,854 - B158DRAFT_0723 0.30 +0.1
723,919 - B158DRAFT_0723 0.33 -0.3
723,950 + B158DRAFT_0723 0.35 +0.0
723,975 + B158DRAFT_0723 0.36 -0.1
723,975 + B158DRAFT_0723 0.36 -0.1
723,975 + B158DRAFT_0723 0.36 -0.4
723,983 - B158DRAFT_0723 0.36 -0.3
723,983 - B158DRAFT_0723 0.36 +0.1
724,010 - B158DRAFT_0723 0.37 -0.1
724,142 - B158DRAFT_0723 0.44 -0.2
724,219 + B158DRAFT_0723 0.48 +0.1
724,219 + B158DRAFT_0723 0.48 +0.4
724,219 + B158DRAFT_0723 0.48 +0.3
724,220 + B158DRAFT_0723 0.48 +0.1
724,227 - B158DRAFT_0723 0.48 -0.2
724,227 - B158DRAFT_0723 0.48 -0.7
724,227 - B158DRAFT_0723 0.48 -0.2
724,252 + B158DRAFT_0723 0.49 -0.2
724,252 + B158DRAFT_0723 0.49 +0.2
724,265 + B158DRAFT_0723 0.50 +0.1
724,374 + B158DRAFT_0723 0.55 -0.2
724,657 + B158DRAFT_0723 0.69 +0.5
724,657 + B158DRAFT_0723 0.69 -0.6
724,665 - B158DRAFT_0723 0.69 -0.1
724,665 - B158DRAFT_0723 0.69 -0.2
724,665 - B158DRAFT_0723 0.69 -0.5
724,674 + B158DRAFT_0723 0.70 +0.1
724,705 + B158DRAFT_0723 0.71 +0.2
724,728 + B158DRAFT_0723 0.72 +1.1
724,778 - B158DRAFT_0723 0.75 +1.8
725,177 + +0.2
725,190 - -0.6
725,382 + -0.4
725,390 - +0.2
725,454 - -0.0
725,768 - B158DRAFT_0724 0.21 -0.8
725,794 - B158DRAFT_0724 0.22 -0.1
725,794 - B158DRAFT_0724 0.22 -0.1
725,859 + B158DRAFT_0724 0.25 +0.0
726,095 - B158DRAFT_0724 0.36 -0.5

Or see this region's nucleotide sequence