Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2004

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2001 and B158DRAFT_2002 are separated by 137 nucleotidesB158DRAFT_2002 and B158DRAFT_2003 are separated by 14 nucleotidesB158DRAFT_2003 and B158DRAFT_2004 are separated by 25 nucleotidesB158DRAFT_2004 and B158DRAFT_2005 are separated by 140 nucleotidesB158DRAFT_2005 and B158DRAFT_2006 are separated by 23 nucleotides B158DRAFT_2001: B158DRAFT_2001 - hypothetical protein, at 136,269 to 136,850 _2001 B158DRAFT_2002: B158DRAFT_2002 - ribosomal protein S6, at 136,988 to 137,386 _2002 B158DRAFT_2003: B158DRAFT_2003 - ribosomal protein S18, at 137,401 to 137,628 _2003 B158DRAFT_2004: B158DRAFT_2004 - LSU ribosomal protein L9P, at 137,654 to 138,109 _2004 B158DRAFT_2005: B158DRAFT_2005 - hypothetical protein, at 138,250 to 139,080 _2005 B158DRAFT_2006: B158DRAFT_2006 - Uncharacterized conserved protein, at 139,104 to 139,502 _2006 Position (kb) 137 138 139Strain fitness (log2 ratio) -2 -1 0 1at 136.662 kb on + strand, within B158DRAFT_2001at 136.705 kb on - strand, within B158DRAFT_2001at 136.705 kb on - strand, within B158DRAFT_2001at 136.728 kb on - strand, within B158DRAFT_2001at 136.838 kb on - strandat 136.840 kb on + strandat 137.729 kb on + strand, within B158DRAFT_2004at 137.760 kb on - strand, within B158DRAFT_2004at 137.800 kb on + strand, within B158DRAFT_2004at 137.846 kb on + strand, within B158DRAFT_2004at 137.846 kb on + strand, within B158DRAFT_2004at 137.846 kb on + strand, within B158DRAFT_2004at 137.854 kb on - strand, within B158DRAFT_2004at 137.854 kb on - strand, within B158DRAFT_2004at 137.864 kb on - strand, within B158DRAFT_2004at 137.896 kb on - strand, within B158DRAFT_2004at 137.934 kb on + strand, within B158DRAFT_2004at 137.971 kb on - strand, within B158DRAFT_2004at 138.112 kb on - strandat 138.120 kb on - strandat 138.215 kb on + strandat 138.345 kb on - strand, within B158DRAFT_2005at 138.381 kb on + strand, within B158DRAFT_2005at 138.422 kb on + strand, within B158DRAFT_2005at 138.441 kb on + strand, within B158DRAFT_2005at 138.529 kb on - strand, within B158DRAFT_2005at 138.536 kb on - strand, within B158DRAFT_2005at 138.579 kb on + strand, within B158DRAFT_2005at 138.579 kb on + strand, within B158DRAFT_2005at 138.579 kb on + strand, within B158DRAFT_2005at 138.579 kb on + strand, within B158DRAFT_2005at 138.579 kb on + strand, within B158DRAFT_2005at 138.587 kb on - strand, within B158DRAFT_2005at 138.587 kb on - strand, within B158DRAFT_2005at 138.587 kb on - strand, within B158DRAFT_2005at 138.597 kb on - strand, within B158DRAFT_2005at 138.615 kb on - strand, within B158DRAFT_2005at 138.629 kb on + strand, within B158DRAFT_2005at 138.629 kb on + strand, within B158DRAFT_2005at 138.637 kb on - strand, within B158DRAFT_2005at 138.724 kb on + strand, within B158DRAFT_2005at 138.724 kb on + strand, within B158DRAFT_2005at 138.807 kb on + strand, within B158DRAFT_2005at 138.807 kb on + strand, within B158DRAFT_2005at 138.815 kb on - strand, within B158DRAFT_2005at 138.815 kb on - strand, within B158DRAFT_2005at 138.826 kb on + strand, within B158DRAFT_2005at 138.838 kb on + strand, within B158DRAFT_2005at 138.953 kb on + strand, within B158DRAFT_2005at 138.953 kb on + strand, within B158DRAFT_2005at 138.958 kb on + strand, within B158DRAFT_2005at 138.958 kb on - strand, within B158DRAFT_2005at 138.961 kb on - strand, within B158DRAFT_2005at 138.961 kb on - strand, within B158DRAFT_2005at 138.961 kb on - strand, within B158DRAFT_2005at 138.978 kb on + strand, within B158DRAFT_2005at 138.986 kb on - strand, within B158DRAFT_2005at 138.986 kb on - strand, within B158DRAFT_2005at 139.040 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
136,662 + B158DRAFT_2001 0.68 -0.2
136,705 - B158DRAFT_2001 0.75 +0.1
136,705 - B158DRAFT_2001 0.75 +0.2
136,728 - B158DRAFT_2001 0.79 +0.2
136,838 - +0.1
136,840 + +0.0
137,729 + B158DRAFT_2004 0.16 -0.7
137,760 - B158DRAFT_2004 0.23 -0.4
137,800 + B158DRAFT_2004 0.32 -0.5
137,846 + B158DRAFT_2004 0.42 -1.0
137,846 + B158DRAFT_2004 0.42 -0.6
137,846 + B158DRAFT_2004 0.42 -1.5
137,854 - B158DRAFT_2004 0.44 -1.9
137,854 - B158DRAFT_2004 0.44 -0.6
137,864 - B158DRAFT_2004 0.46 -1.8
137,896 - B158DRAFT_2004 0.53 -0.4
137,934 + B158DRAFT_2004 0.61 +0.0
137,971 - B158DRAFT_2004 0.70 -0.5
138,112 - -1.0
138,120 - -0.6
138,215 + -0.9
138,345 - B158DRAFT_2005 0.11 -0.6
138,381 + B158DRAFT_2005 0.16 -0.1
138,422 + B158DRAFT_2005 0.21 -0.7
138,441 + B158DRAFT_2005 0.23 +0.5
138,529 - B158DRAFT_2005 0.34 -0.2
138,536 - B158DRAFT_2005 0.34 -0.4
138,579 + B158DRAFT_2005 0.40 +0.3
138,579 + B158DRAFT_2005 0.40 -0.9
138,579 + B158DRAFT_2005 0.40 +0.1
138,579 + B158DRAFT_2005 0.40 +0.4
138,579 + B158DRAFT_2005 0.40 +0.3
138,587 - B158DRAFT_2005 0.41 -0.1
138,587 - B158DRAFT_2005 0.41 +0.2
138,587 - B158DRAFT_2005 0.41 -0.3
138,597 - B158DRAFT_2005 0.42 -0.2
138,615 - B158DRAFT_2005 0.44 -0.6
138,629 + B158DRAFT_2005 0.46 -0.6
138,629 + B158DRAFT_2005 0.46 +0.2
138,637 - B158DRAFT_2005 0.47 -0.1
138,724 + B158DRAFT_2005 0.57 -0.1
138,724 + B158DRAFT_2005 0.57 -0.3
138,807 + B158DRAFT_2005 0.67 -0.1
138,807 + B158DRAFT_2005 0.67 -0.1
138,815 - B158DRAFT_2005 0.68 +0.1
138,815 - B158DRAFT_2005 0.68 -0.6
138,826 + B158DRAFT_2005 0.69 -0.0
138,838 + B158DRAFT_2005 0.71 -0.0
138,953 + B158DRAFT_2005 0.85 -0.8
138,953 + B158DRAFT_2005 0.85 +0.2
138,958 + B158DRAFT_2005 0.85 +0.4
138,958 - B158DRAFT_2005 0.85 +0.5
138,961 - B158DRAFT_2005 0.86 -0.3
138,961 - B158DRAFT_2005 0.86 -1.5
138,961 - B158DRAFT_2005 0.86 +0.5
138,978 + B158DRAFT_2005 0.88 -0.4
138,986 - B158DRAFT_2005 0.89 -0.1
138,986 - B158DRAFT_2005 0.89 +0.1
139,040 + -0.2

Or see this region's nucleotide sequence