Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1299 and B158DRAFT_1300 are separated by 460 nucleotides B158DRAFT_1300 and B158DRAFT_1301 overlap by 1 nucleotides
B158DRAFT_1299: B158DRAFT_1299 - Uncharacterized conserved protein, at 1,344,825 to 1,345,946
_1299
B158DRAFT_1300: B158DRAFT_1300 - Kef-type potassium/proton antiporter accessory protein, CPA2 family (TC 2.A.37.1), at 1,346,407 to 1,346,970
_1300
B158DRAFT_1301: B158DRAFT_1301 - Kef-type potassium/proton antiporter, CPA2 family (TC 2.A.37.1), at 1,346,970 to 1,348,859
_1301
Position (kb)
1346
1347 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1345.431 kb on + strand, within B158DRAFT_1299 at 1345.460 kb on + strand, within B158DRAFT_1299 at 1345.481 kb on + strand, within B158DRAFT_1299 at 1345.489 kb on - strand, within B158DRAFT_1299 at 1345.489 kb on - strand, within B158DRAFT_1299 at 1345.492 kb on + strand, within B158DRAFT_1299 at 1345.503 kb on - strand, within B158DRAFT_1299 at 1345.550 kb on - strand, within B158DRAFT_1299 at 1345.629 kb on - strand, within B158DRAFT_1299 at 1345.630 kb on + strand, within B158DRAFT_1299 at 1345.638 kb on - strand, within B158DRAFT_1299 at 1345.654 kb on + strand, within B158DRAFT_1299 at 1345.662 kb on - strand, within B158DRAFT_1299 at 1345.662 kb on - strand, within B158DRAFT_1299 at 1345.662 kb on - strand, within B158DRAFT_1299 at 1345.685 kb on + strand, within B158DRAFT_1299 at 1345.685 kb on + strand, within B158DRAFT_1299 at 1345.685 kb on + strand, within B158DRAFT_1299 at 1345.685 kb on + strand, within B158DRAFT_1299 at 1345.685 kb on + strand, within B158DRAFT_1299 at 1345.685 kb on + strand, within B158DRAFT_1299 at 1345.685 kb on + strand, within B158DRAFT_1299 at 1345.685 kb on + strand, within B158DRAFT_1299 at 1345.685 kb on + strand, within B158DRAFT_1299 at 1345.685 kb on + strand, within B158DRAFT_1299 at 1345.685 kb on + strand, within B158DRAFT_1299 at 1345.693 kb on - strand, within B158DRAFT_1299 at 1345.693 kb on - strand, within B158DRAFT_1299 at 1345.693 kb on - strand, within B158DRAFT_1299 at 1345.693 kb on - strand, within B158DRAFT_1299 at 1345.693 kb on - strand, within B158DRAFT_1299 at 1345.693 kb on - strand, within B158DRAFT_1299 at 1345.695 kb on + strand, within B158DRAFT_1299 at 1345.968 kb on + strand at 1345.968 kb on + strand at 1345.968 kb on + strand at 1345.976 kb on - strand at 1345.976 kb on - strand at 1345.976 kb on - strand at 1345.976 kb on - strand at 1345.980 kb on - strand at 1346.170 kb on + strand at 1346.246 kb on + strand at 1346.246 kb on + strand at 1346.371 kb on - strand at 1346.371 kb on - strand at 1346.371 kb on - strand at 1346.371 kb on - strand at 1346.419 kb on + strand at 1346.496 kb on + strand, within B158DRAFT_1300 at 1346.560 kb on + strand, within B158DRAFT_1300 at 1346.621 kb on + strand, within B158DRAFT_1300 at 1346.629 kb on - strand, within B158DRAFT_1300 at 1346.629 kb on - strand, within B158DRAFT_1300 at 1346.632 kb on - strand, within B158DRAFT_1300 at 1346.642 kb on - strand, within B158DRAFT_1300 at 1346.731 kb on + strand, within B158DRAFT_1300 at 1346.793 kb on + strand, within B158DRAFT_1300 at 1346.801 kb on - strand, within B158DRAFT_1300 at 1346.801 kb on - strand, within B158DRAFT_1300 at 1346.837 kb on + strand, within B158DRAFT_1300 at 1346.837 kb on + strand, within B158DRAFT_1300 at 1346.845 kb on - strand, within B158DRAFT_1300 at 1346.845 kb on - strand, within B158DRAFT_1300 at 1346.845 kb on - strand, within B158DRAFT_1300 at 1346.845 kb on - strand, within B158DRAFT_1300 at 1346.876 kb on - strand, within B158DRAFT_1300 at 1346.879 kb on + strand, within B158DRAFT_1300 at 1346.906 kb on + strand, within B158DRAFT_1300 at 1346.906 kb on + strand, within B158DRAFT_1300 at 1346.912 kb on - strand, within B158DRAFT_1300 at 1346.912 kb on - strand, within B158DRAFT_1300 at 1346.914 kb on + strand at 1346.914 kb on + strand at 1346.914 kb on - strand at 1346.914 kb on - strand at 1346.914 kb on - strand at 1346.914 kb on - strand at 1346.914 kb on - strand at 1346.922 kb on - strand at 1346.922 kb on - strand at 1346.922 kb on - strand at 1346.922 kb on - strand at 1346.927 kb on + strand at 1347.018 kb on + strand at 1347.026 kb on - strand at 1347.036 kb on - strand at 1347.036 kb on - strand at 1347.051 kb on + strand at 1347.051 kb on + strand at 1347.051 kb on + strand at 1347.051 kb on + strand at 1347.051 kb on + strand at 1347.051 kb on + strand at 1347.059 kb on - strand at 1347.059 kb on - strand at 1347.059 kb on - strand at 1347.059 kb on - strand at 1347.059 kb on - strand at 1347.059 kb on - strand at 1347.066 kb on - strand at 1347.066 kb on - strand at 1347.121 kb on + strand at 1347.121 kb on + strand at 1347.121 kb on + strand at 1347.121 kb on + strand at 1347.121 kb on + strand at 1347.138 kb on + strand at 1347.146 kb on - strand at 1347.187 kb on + strand, within B158DRAFT_1301 at 1347.187 kb on + strand, within B158DRAFT_1301 at 1347.195 kb on - strand, within B158DRAFT_1301 at 1347.195 kb on - strand, within B158DRAFT_1301 at 1347.240 kb on - strand, within B158DRAFT_1301 at 1347.276 kb on - strand, within B158DRAFT_1301 at 1347.317 kb on - strand, within B158DRAFT_1301 at 1347.326 kb on + strand, within B158DRAFT_1301 at 1347.395 kb on + strand, within B158DRAFT_1301 at 1347.395 kb on + strand, within B158DRAFT_1301 at 1347.395 kb on + strand, within B158DRAFT_1301 at 1347.403 kb on - strand, within B158DRAFT_1301 at 1347.403 kb on - strand, within B158DRAFT_1301 at 1347.403 kb on - strand, within B158DRAFT_1301 at 1347.482 kb on + strand, within B158DRAFT_1301 at 1347.490 kb on - strand, within B158DRAFT_1301 at 1347.531 kb on + strand, within B158DRAFT_1301 at 1347.571 kb on - strand, within B158DRAFT_1301 at 1347.682 kb on + strand, within B158DRAFT_1301 at 1347.682 kb on + strand, within B158DRAFT_1301 at 1347.682 kb on + strand, within B158DRAFT_1301 at 1347.682 kb on + strand, within B158DRAFT_1301 at 1347.690 kb on - strand, within B158DRAFT_1301 at 1347.695 kb on - strand, within B158DRAFT_1301 at 1347.742 kb on + strand, within B158DRAFT_1301 at 1347.776 kb on + strand, within B158DRAFT_1301 at 1347.777 kb on - strand, within B158DRAFT_1301
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,345,431 + B158DRAFT_1299 0.54 -2.4 1,345,460 + B158DRAFT_1299 0.57 -2.1 1,345,481 + B158DRAFT_1299 0.58 +0.5 1,345,489 - B158DRAFT_1299 0.59 -1.2 1,345,489 - B158DRAFT_1299 0.59 -1.5 1,345,492 + B158DRAFT_1299 0.59 -0.7 1,345,503 - B158DRAFT_1299 0.60 -3.2 1,345,550 - B158DRAFT_1299 0.65 -1.4 1,345,629 - B158DRAFT_1299 0.72 -1.6 1,345,630 + B158DRAFT_1299 0.72 -2.3 1,345,638 - B158DRAFT_1299 0.72 -2.5 1,345,654 + B158DRAFT_1299 0.74 -2.1 1,345,662 - B158DRAFT_1299 0.75 -3.3 1,345,662 - B158DRAFT_1299 0.75 -2.1 1,345,662 - B158DRAFT_1299 0.75 -0.4 1,345,685 + B158DRAFT_1299 0.77 -2.6 1,345,685 + B158DRAFT_1299 0.77 -1.1 1,345,685 + B158DRAFT_1299 0.77 -1.9 1,345,685 + B158DRAFT_1299 0.77 -1.8 1,345,685 + B158DRAFT_1299 0.77 -2.0 1,345,685 + B158DRAFT_1299 0.77 -2.4 1,345,685 + B158DRAFT_1299 0.77 -3.6 1,345,685 + B158DRAFT_1299 0.77 -3.0 1,345,685 + B158DRAFT_1299 0.77 -1.5 1,345,685 + B158DRAFT_1299 0.77 -1.2 1,345,685 + B158DRAFT_1299 0.77 -2.0 1,345,693 - B158DRAFT_1299 0.77 -1.7 1,345,693 - B158DRAFT_1299 0.77 -2.3 1,345,693 - B158DRAFT_1299 0.77 -2.2 1,345,693 - B158DRAFT_1299 0.77 -2.7 1,345,693 - B158DRAFT_1299 0.77 -2.0 1,345,693 - B158DRAFT_1299 0.77 -2.3 1,345,695 + B158DRAFT_1299 0.78 -2.8 1,345,968 + -2.3 1,345,968 + -0.6 1,345,968 + -0.9 1,345,976 - -0.6 1,345,976 - -1.4 1,345,976 - -1.0 1,345,976 - -0.7 1,345,980 - -0.9 1,346,170 + -0.7 1,346,246 + -0.9 1,346,246 + -0.9 1,346,371 - +0.0 1,346,371 - +0.2 1,346,371 - +1.1 1,346,371 - -0.5 1,346,419 + -0.6 1,346,496 + B158DRAFT_1300 0.16 -0.1 1,346,560 + B158DRAFT_1300 0.27 -0.4 1,346,621 + B158DRAFT_1300 0.38 -0.8 1,346,629 - B158DRAFT_1300 0.39 -0.3 1,346,629 - B158DRAFT_1300 0.39 -0.2 1,346,632 - B158DRAFT_1300 0.40 -0.0 1,346,642 - B158DRAFT_1300 0.42 +0.2 1,346,731 + B158DRAFT_1300 0.57 +0.2 1,346,793 + B158DRAFT_1300 0.68 -0.0 1,346,801 - B158DRAFT_1300 0.70 +0.4 1,346,801 - B158DRAFT_1300 0.70 +0.1 1,346,837 + B158DRAFT_1300 0.76 +0.2 1,346,837 + B158DRAFT_1300 0.76 -0.1 1,346,845 - B158DRAFT_1300 0.78 -0.7 1,346,845 - B158DRAFT_1300 0.78 -1.5 1,346,845 - B158DRAFT_1300 0.78 +0.4 1,346,845 - B158DRAFT_1300 0.78 -0.8 1,346,876 - B158DRAFT_1300 0.83 -0.7 1,346,879 + B158DRAFT_1300 0.84 -0.8 1,346,906 + B158DRAFT_1300 0.88 -0.3 1,346,906 + B158DRAFT_1300 0.88 -0.3 1,346,912 - B158DRAFT_1300 0.90 -0.9 1,346,912 - B158DRAFT_1300 0.90 -0.2 1,346,914 + +0.3 1,346,914 + -0.9 1,346,914 - +0.2 1,346,914 - +0.0 1,346,914 - +0.1 1,346,914 - -0.0 1,346,914 - +0.1 1,346,922 - -0.2 1,346,922 - +0.1 1,346,922 - -0.6 1,346,922 - +0.6 1,346,927 + -0.4 1,347,018 + +0.2 1,347,026 - +0.2 1,347,036 - +0.1 1,347,036 - -0.4 1,347,051 + +0.1 1,347,051 + -1.0 1,347,051 + -0.2 1,347,051 + +0.3 1,347,051 + +0.2 1,347,051 + -0.3 1,347,059 - -0.1 1,347,059 - +0.7 1,347,059 - +0.8 1,347,059 - -0.3 1,347,059 - +0.6 1,347,059 - -0.4 1,347,066 - +0.3 1,347,066 - -0.0 1,347,121 + -0.0 1,347,121 + +0.1 1,347,121 + +0.1 1,347,121 + -0.8 1,347,121 + -0.4 1,347,138 + -0.4 1,347,146 - -0.1 1,347,187 + B158DRAFT_1301 0.11 +0.2 1,347,187 + B158DRAFT_1301 0.11 +0.6 1,347,195 - B158DRAFT_1301 0.12 -1.6 1,347,195 - B158DRAFT_1301 0.12 +0.3 1,347,240 - B158DRAFT_1301 0.14 -0.1 1,347,276 - B158DRAFT_1301 0.16 -1.2 1,347,317 - B158DRAFT_1301 0.18 -0.4 1,347,326 + B158DRAFT_1301 0.19 -0.1 1,347,395 + B158DRAFT_1301 0.22 -0.1 1,347,395 + B158DRAFT_1301 0.22 -0.4 1,347,395 + B158DRAFT_1301 0.22 +0.1 1,347,403 - B158DRAFT_1301 0.23 -1.0 1,347,403 - B158DRAFT_1301 0.23 -0.2 1,347,403 - B158DRAFT_1301 0.23 -0.3 1,347,482 + B158DRAFT_1301 0.27 -0.8 1,347,490 - B158DRAFT_1301 0.28 -0.8 1,347,531 + B158DRAFT_1301 0.30 -0.3 1,347,571 - B158DRAFT_1301 0.32 -0.7 1,347,682 + B158DRAFT_1301 0.38 -0.5 1,347,682 + B158DRAFT_1301 0.38 -1.1 1,347,682 + B158DRAFT_1301 0.38 +0.2 1,347,682 + B158DRAFT_1301 0.38 +0.5 1,347,690 - B158DRAFT_1301 0.38 +0.1 1,347,695 - B158DRAFT_1301 0.38 +0.6 1,347,742 + B158DRAFT_1301 0.41 -0.0 1,347,776 + B158DRAFT_1301 0.43 -0.5 1,347,777 - B158DRAFT_1301 0.43 -0.7
Or see this region's nucleotide sequence