Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1105 and B158DRAFT_1106 are separated by 63 nucleotides B158DRAFT_1106 and B158DRAFT_1107 are separated by 11 nucleotides B158DRAFT_1107 and B158DRAFT_1108 are separated by 94 nucleotides B158DRAFT_1108 and B158DRAFT_1109 are separated by 2 nucleotides
B158DRAFT_1105: B158DRAFT_1105 - hypothetical protein, at 1,143,352 to 1,143,624
_1105
B158DRAFT_1106: B158DRAFT_1106 - Protein metal binding site., at 1,143,688 to 1,144,302
_1106
B158DRAFT_1107: B158DRAFT_1107 - Protein metal binding site., at 1,144,314 to 1,144,898
_1107
B158DRAFT_1108: B158DRAFT_1108 - Uncharacterized protein conserved in bacteria, at 1,144,993 to 1,145,139
_1108
B158DRAFT_1109: B158DRAFT_1109 - Deoxyribodipyrimidine photolyase, at 1,145,142 to 1,146,590
_1109
Position (kb)
1144
1145 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1143.442 kb on + strand, within B158DRAFT_1105 at 1143.501 kb on + strand, within B158DRAFT_1105 at 1143.509 kb on - strand, within B158DRAFT_1105 at 1143.509 kb on - strand, within B158DRAFT_1105 at 1143.509 kb on - strand, within B158DRAFT_1105 at 1143.509 kb on - strand, within B158DRAFT_1105 at 1143.558 kb on - strand, within B158DRAFT_1105 at 1143.676 kb on + strand at 1143.820 kb on - strand, within B158DRAFT_1106 at 1143.846 kb on + strand, within B158DRAFT_1106 at 1143.859 kb on - strand, within B158DRAFT_1106 at 1143.859 kb on - strand, within B158DRAFT_1106 at 1143.859 kb on - strand, within B158DRAFT_1106 at 1143.933 kb on - strand, within B158DRAFT_1106 at 1143.940 kb on - strand, within B158DRAFT_1106 at 1143.940 kb on - strand, within B158DRAFT_1106 at 1143.944 kb on + strand, within B158DRAFT_1106 at 1143.944 kb on + strand, within B158DRAFT_1106 at 1143.952 kb on - strand, within B158DRAFT_1106 at 1143.952 kb on - strand, within B158DRAFT_1106 at 1143.952 kb on - strand, within B158DRAFT_1106 at 1143.952 kb on - strand, within B158DRAFT_1106 at 1143.954 kb on + strand, within B158DRAFT_1106 at 1143.957 kb on - strand, within B158DRAFT_1106 at 1143.957 kb on - strand, within B158DRAFT_1106 at 1143.962 kb on - strand, within B158DRAFT_1106 at 1143.962 kb on - strand, within B158DRAFT_1106 at 1143.970 kb on + strand, within B158DRAFT_1106 at 1143.978 kb on - strand, within B158DRAFT_1106 at 1143.985 kb on - strand, within B158DRAFT_1106 at 1144.108 kb on - strand, within B158DRAFT_1106 at 1144.113 kb on - strand, within B158DRAFT_1106 at 1144.155 kb on - strand, within B158DRAFT_1106 at 1144.236 kb on - strand, within B158DRAFT_1106 at 1144.312 kb on + strand at 1144.320 kb on - strand at 1144.386 kb on + strand, within B158DRAFT_1107 at 1144.411 kb on - strand, within B158DRAFT_1107 at 1144.452 kb on - strand, within B158DRAFT_1107 at 1144.541 kb on - strand, within B158DRAFT_1107 at 1144.541 kb on - strand, within B158DRAFT_1107 at 1144.554 kb on + strand, within B158DRAFT_1107 at 1144.554 kb on + strand, within B158DRAFT_1107 at 1144.562 kb on - strand, within B158DRAFT_1107 at 1144.562 kb on - strand, within B158DRAFT_1107 at 1144.562 kb on - strand, within B158DRAFT_1107 at 1144.562 kb on - strand, within B158DRAFT_1107 at 1144.562 kb on - strand, within B158DRAFT_1107 at 1144.592 kb on - strand, within B158DRAFT_1107 at 1144.599 kb on + strand, within B158DRAFT_1107 at 1144.642 kb on + strand, within B158DRAFT_1107 at 1144.642 kb on + strand, within B158DRAFT_1107 at 1144.650 kb on - strand, within B158DRAFT_1107 at 1144.661 kb on - strand, within B158DRAFT_1107 at 1144.661 kb on - strand, within B158DRAFT_1107 at 1144.668 kb on - strand, within B158DRAFT_1107 at 1144.669 kb on + strand, within B158DRAFT_1107 at 1144.669 kb on + strand, within B158DRAFT_1107 at 1144.677 kb on - strand, within B158DRAFT_1107 at 1144.677 kb on - strand, within B158DRAFT_1107 at 1144.704 kb on - strand, within B158DRAFT_1107 at 1144.825 kb on - strand, within B158DRAFT_1107 at 1144.825 kb on - strand, within B158DRAFT_1107 at 1144.846 kb on + strand at 1144.868 kb on + strand at 1144.876 kb on - strand at 1144.885 kb on + strand at 1144.900 kb on + strand at 1145.028 kb on + strand, within B158DRAFT_1108 at 1145.028 kb on + strand, within B158DRAFT_1108 at 1145.036 kb on - strand, within B158DRAFT_1108 at 1145.040 kb on + strand, within B158DRAFT_1108 at 1145.079 kb on + strand, within B158DRAFT_1108 at 1145.087 kb on - strand, within B158DRAFT_1108 at 1145.102 kb on + strand, within B158DRAFT_1108 at 1145.134 kb on - strand at 1145.159 kb on + strand at 1145.159 kb on + strand at 1145.200 kb on + strand at 1145.208 kb on - strand at 1145.208 kb on - strand at 1145.208 kb on - strand at 1145.218 kb on + strand at 1145.226 kb on - strand at 1145.322 kb on + strand, within B158DRAFT_1109 at 1145.326 kb on + strand, within B158DRAFT_1109 at 1145.350 kb on + strand, within B158DRAFT_1109 at 1145.350 kb on + strand, within B158DRAFT_1109 at 1145.350 kb on + strand, within B158DRAFT_1109 at 1145.350 kb on + strand, within B158DRAFT_1109 at 1145.357 kb on + strand, within B158DRAFT_1109 at 1145.357 kb on + strand, within B158DRAFT_1109 at 1145.357 kb on + strand, within B158DRAFT_1109 at 1145.357 kb on + strand, within B158DRAFT_1109 at 1145.357 kb on + strand, within B158DRAFT_1109 at 1145.357 kb on + strand, within B158DRAFT_1109 at 1145.357 kb on + strand, within B158DRAFT_1109 at 1145.357 kb on + strand, within B158DRAFT_1109 at 1145.357 kb on + strand, within B158DRAFT_1109 at 1145.357 kb on + strand, within B158DRAFT_1109 at 1145.357 kb on + strand, within B158DRAFT_1109 at 1145.358 kb on - strand, within B158DRAFT_1109 at 1145.358 kb on - strand, within B158DRAFT_1109 at 1145.365 kb on - strand, within B158DRAFT_1109 at 1145.365 kb on - strand, within B158DRAFT_1109 at 1145.365 kb on - strand, within B158DRAFT_1109 at 1145.409 kb on - strand, within B158DRAFT_1109 at 1145.463 kb on + strand, within B158DRAFT_1109 at 1145.471 kb on + strand, within B158DRAFT_1109 at 1145.513 kb on + strand, within B158DRAFT_1109 at 1145.513 kb on + strand, within B158DRAFT_1109 at 1145.513 kb on + strand, within B158DRAFT_1109 at 1145.513 kb on + strand, within B158DRAFT_1109 at 1145.521 kb on - strand, within B158DRAFT_1109 at 1145.576 kb on + strand, within B158DRAFT_1109 at 1145.584 kb on - strand, within B158DRAFT_1109 at 1145.612 kb on + strand, within B158DRAFT_1109 at 1145.612 kb on + strand, within B158DRAFT_1109 at 1145.612 kb on + strand, within B158DRAFT_1109 at 1145.620 kb on - strand, within B158DRAFT_1109 at 1145.620 kb on - strand, within B158DRAFT_1109 at 1145.620 kb on - strand, within B158DRAFT_1109 at 1145.620 kb on - strand, within B158DRAFT_1109 at 1145.620 kb on - strand, within B158DRAFT_1109 at 1145.644 kb on + strand, within B158DRAFT_1109 at 1145.652 kb on - strand, within B158DRAFT_1109 at 1145.652 kb on - strand, within B158DRAFT_1109 at 1145.659 kb on + strand, within B158DRAFT_1109 at 1145.659 kb on + strand, within B158DRAFT_1109 at 1145.659 kb on + strand, within B158DRAFT_1109 at 1145.679 kb on + strand, within B158DRAFT_1109 at 1145.684 kb on + strand, within B158DRAFT_1109 at 1145.793 kb on + strand, within B158DRAFT_1109 at 1145.798 kb on + strand, within B158DRAFT_1109 at 1145.798 kb on + strand, within B158DRAFT_1109 at 1145.798 kb on + strand, within B158DRAFT_1109 at 1145.798 kb on + strand, within B158DRAFT_1109 at 1145.801 kb on - strand, within B158DRAFT_1109 at 1145.839 kb on - strand, within B158DRAFT_1109 at 1145.839 kb on - strand, within B158DRAFT_1109 at 1145.875 kb on + strand, within B158DRAFT_1109 at 1145.879 kb on + strand, within B158DRAFT_1109 at 1145.887 kb on - strand, within B158DRAFT_1109 at 1145.887 kb on - strand, within B158DRAFT_1109 at 1145.889 kb on + strand, within B158DRAFT_1109 at 1145.894 kb on + strand, within B158DRAFT_1109 at 1145.894 kb on + strand, within B158DRAFT_1109 at 1145.894 kb on + strand, within B158DRAFT_1109
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,143,442 + B158DRAFT_1105 0.33 -0.1 1,143,501 + B158DRAFT_1105 0.55 -0.4 1,143,509 - B158DRAFT_1105 0.58 +0.4 1,143,509 - B158DRAFT_1105 0.58 +0.4 1,143,509 - B158DRAFT_1105 0.58 +0.3 1,143,509 - B158DRAFT_1105 0.58 -0.2 1,143,558 - B158DRAFT_1105 0.75 -0.6 1,143,676 + -0.6 1,143,820 - B158DRAFT_1106 0.21 +0.1 1,143,846 + B158DRAFT_1106 0.26 -2.2 1,143,859 - B158DRAFT_1106 0.28 -0.5 1,143,859 - B158DRAFT_1106 0.28 -0.0 1,143,859 - B158DRAFT_1106 0.28 -0.4 1,143,933 - B158DRAFT_1106 0.40 -0.2 1,143,940 - B158DRAFT_1106 0.41 -0.1 1,143,940 - B158DRAFT_1106 0.41 +0.1 1,143,944 + B158DRAFT_1106 0.42 -0.2 1,143,944 + B158DRAFT_1106 0.42 +1.0 1,143,952 - B158DRAFT_1106 0.43 -0.5 1,143,952 - B158DRAFT_1106 0.43 -1.1 1,143,952 - B158DRAFT_1106 0.43 -0.1 1,143,952 - B158DRAFT_1106 0.43 -0.1 1,143,954 + B158DRAFT_1106 0.43 +0.5 1,143,957 - B158DRAFT_1106 0.44 +0.2 1,143,957 - B158DRAFT_1106 0.44 +0.1 1,143,962 - B158DRAFT_1106 0.45 +0.2 1,143,962 - B158DRAFT_1106 0.45 -2.8 1,143,970 + B158DRAFT_1106 0.46 +0.0 1,143,978 - B158DRAFT_1106 0.47 -0.2 1,143,985 - B158DRAFT_1106 0.48 -0.0 1,144,108 - B158DRAFT_1106 0.68 +0.1 1,144,113 - B158DRAFT_1106 0.69 -0.3 1,144,155 - B158DRAFT_1106 0.76 -0.5 1,144,236 - B158DRAFT_1106 0.89 -1.1 1,144,312 + +0.2 1,144,320 - +0.5 1,144,386 + B158DRAFT_1107 0.12 -0.1 1,144,411 - B158DRAFT_1107 0.17 +0.0 1,144,452 - B158DRAFT_1107 0.24 -0.6 1,144,541 - B158DRAFT_1107 0.39 -0.2 1,144,541 - B158DRAFT_1107 0.39 -0.2 1,144,554 + B158DRAFT_1107 0.41 +0.7 1,144,554 + B158DRAFT_1107 0.41 +0.2 1,144,562 - B158DRAFT_1107 0.42 -0.3 1,144,562 - B158DRAFT_1107 0.42 -1.0 1,144,562 - B158DRAFT_1107 0.42 -0.1 1,144,562 - B158DRAFT_1107 0.42 -0.2 1,144,562 - B158DRAFT_1107 0.42 +0.1 1,144,592 - B158DRAFT_1107 0.48 +0.2 1,144,599 + B158DRAFT_1107 0.49 +0.4 1,144,642 + B158DRAFT_1107 0.56 +1.3 1,144,642 + B158DRAFT_1107 0.56 -0.1 1,144,650 - B158DRAFT_1107 0.57 +0.1 1,144,661 - B158DRAFT_1107 0.59 +0.6 1,144,661 - B158DRAFT_1107 0.59 +0.3 1,144,668 - B158DRAFT_1107 0.61 -0.4 1,144,669 + B158DRAFT_1107 0.61 -0.1 1,144,669 + B158DRAFT_1107 0.61 +0.2 1,144,677 - B158DRAFT_1107 0.62 -0.8 1,144,677 - B158DRAFT_1107 0.62 +0.4 1,144,704 - B158DRAFT_1107 0.67 +0.0 1,144,825 - B158DRAFT_1107 0.87 -0.0 1,144,825 - B158DRAFT_1107 0.87 -0.1 1,144,846 + -0.3 1,144,868 + +0.7 1,144,876 - -0.1 1,144,885 + +0.1 1,144,900 + -1.4 1,145,028 + B158DRAFT_1108 0.24 -0.4 1,145,028 + B158DRAFT_1108 0.24 -0.5 1,145,036 - B158DRAFT_1108 0.29 -0.7 1,145,040 + B158DRAFT_1108 0.32 +1.4 1,145,079 + B158DRAFT_1108 0.59 -0.4 1,145,087 - B158DRAFT_1108 0.64 -0.2 1,145,102 + B158DRAFT_1108 0.74 -0.0 1,145,134 - +0.0 1,145,159 + -0.1 1,145,159 + +0.3 1,145,200 + -0.2 1,145,208 - -0.5 1,145,208 - +0.1 1,145,208 - -0.4 1,145,218 + +0.1 1,145,226 - -0.4 1,145,322 + B158DRAFT_1109 0.12 +0.6 1,145,326 + B158DRAFT_1109 0.13 +0.1 1,145,350 + B158DRAFT_1109 0.14 +0.5 1,145,350 + B158DRAFT_1109 0.14 -0.1 1,145,350 + B158DRAFT_1109 0.14 -0.1 1,145,350 + B158DRAFT_1109 0.14 -0.3 1,145,357 + B158DRAFT_1109 0.15 +0.1 1,145,357 + B158DRAFT_1109 0.15 -1.6 1,145,357 + B158DRAFT_1109 0.15 -0.4 1,145,357 + B158DRAFT_1109 0.15 -1.0 1,145,357 + B158DRAFT_1109 0.15 -1.6 1,145,357 + B158DRAFT_1109 0.15 -0.1 1,145,357 + B158DRAFT_1109 0.15 +0.1 1,145,357 + B158DRAFT_1109 0.15 -0.9 1,145,357 + B158DRAFT_1109 0.15 -0.1 1,145,357 + B158DRAFT_1109 0.15 +0.7 1,145,357 + B158DRAFT_1109 0.15 +0.4 1,145,358 - B158DRAFT_1109 0.15 +1.5 1,145,358 - B158DRAFT_1109 0.15 +1.2 1,145,365 - B158DRAFT_1109 0.15 +0.3 1,145,365 - B158DRAFT_1109 0.15 +0.2 1,145,365 - B158DRAFT_1109 0.15 -0.4 1,145,409 - B158DRAFT_1109 0.18 -0.2 1,145,463 + B158DRAFT_1109 0.22 -1.6 1,145,471 + B158DRAFT_1109 0.23 +0.4 1,145,513 + B158DRAFT_1109 0.26 -0.4 1,145,513 + B158DRAFT_1109 0.26 -0.7 1,145,513 + B158DRAFT_1109 0.26 -0.1 1,145,513 + B158DRAFT_1109 0.26 +0.5 1,145,521 - B158DRAFT_1109 0.26 -0.5 1,145,576 + B158DRAFT_1109 0.30 -0.3 1,145,584 - B158DRAFT_1109 0.31 -0.2 1,145,612 + B158DRAFT_1109 0.32 -0.2 1,145,612 + B158DRAFT_1109 0.32 +0.5 1,145,612 + B158DRAFT_1109 0.32 -0.2 1,145,620 - B158DRAFT_1109 0.33 -0.6 1,145,620 - B158DRAFT_1109 0.33 +0.2 1,145,620 - B158DRAFT_1109 0.33 -0.0 1,145,620 - B158DRAFT_1109 0.33 -0.1 1,145,620 - B158DRAFT_1109 0.33 +0.0 1,145,644 + B158DRAFT_1109 0.35 -0.3 1,145,652 - B158DRAFT_1109 0.35 -0.3 1,145,652 - B158DRAFT_1109 0.35 -0.4 1,145,659 + B158DRAFT_1109 0.36 +0.8 1,145,659 + B158DRAFT_1109 0.36 +0.3 1,145,659 + B158DRAFT_1109 0.36 -0.0 1,145,679 + B158DRAFT_1109 0.37 -0.3 1,145,684 + B158DRAFT_1109 0.37 +0.0 1,145,793 + B158DRAFT_1109 0.45 -1.5 1,145,798 + B158DRAFT_1109 0.45 +0.3 1,145,798 + B158DRAFT_1109 0.45 -0.3 1,145,798 + B158DRAFT_1109 0.45 +0.3 1,145,798 + B158DRAFT_1109 0.45 -3.4 1,145,801 - B158DRAFT_1109 0.45 -0.6 1,145,839 - B158DRAFT_1109 0.48 +0.4 1,145,839 - B158DRAFT_1109 0.48 -0.0 1,145,875 + B158DRAFT_1109 0.51 +0.2 1,145,879 + B158DRAFT_1109 0.51 -0.1 1,145,887 - B158DRAFT_1109 0.51 +0.6 1,145,887 - B158DRAFT_1109 0.51 +0.1 1,145,889 + B158DRAFT_1109 0.52 -0.3 1,145,894 + B158DRAFT_1109 0.52 +0.2 1,145,894 + B158DRAFT_1109 0.52 +0.3 1,145,894 + B158DRAFT_1109 0.52 +0.1
Or see this region's nucleotide sequence