Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1107

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1105 and B158DRAFT_1106 are separated by 63 nucleotidesB158DRAFT_1106 and B158DRAFT_1107 are separated by 11 nucleotidesB158DRAFT_1107 and B158DRAFT_1108 are separated by 94 nucleotidesB158DRAFT_1108 and B158DRAFT_1109 are separated by 2 nucleotides B158DRAFT_1105: B158DRAFT_1105 - hypothetical protein, at 1,143,352 to 1,143,624 _1105 B158DRAFT_1106: B158DRAFT_1106 - Protein metal binding site., at 1,143,688 to 1,144,302 _1106 B158DRAFT_1107: B158DRAFT_1107 - Protein metal binding site., at 1,144,314 to 1,144,898 _1107 B158DRAFT_1108: B158DRAFT_1108 - Uncharacterized protein conserved in bacteria, at 1,144,993 to 1,145,139 _1108 B158DRAFT_1109: B158DRAFT_1109 - Deoxyribodipyrimidine photolyase, at 1,145,142 to 1,146,590 _1109 Position (kb) 1144 1145Strain fitness (log2 ratio) -3 -2 -1 0 1at 1143.442 kb on + strand, within B158DRAFT_1105at 1143.501 kb on + strand, within B158DRAFT_1105at 1143.509 kb on - strand, within B158DRAFT_1105at 1143.509 kb on - strand, within B158DRAFT_1105at 1143.509 kb on - strand, within B158DRAFT_1105at 1143.509 kb on - strand, within B158DRAFT_1105at 1143.558 kb on - strand, within B158DRAFT_1105at 1143.676 kb on + strandat 1143.820 kb on - strand, within B158DRAFT_1106at 1143.846 kb on + strand, within B158DRAFT_1106at 1143.859 kb on - strand, within B158DRAFT_1106at 1143.859 kb on - strand, within B158DRAFT_1106at 1143.859 kb on - strand, within B158DRAFT_1106at 1143.933 kb on - strand, within B158DRAFT_1106at 1143.940 kb on - strand, within B158DRAFT_1106at 1143.940 kb on - strand, within B158DRAFT_1106at 1143.944 kb on + strand, within B158DRAFT_1106at 1143.944 kb on + strand, within B158DRAFT_1106at 1143.952 kb on - strand, within B158DRAFT_1106at 1143.952 kb on - strand, within B158DRAFT_1106at 1143.952 kb on - strand, within B158DRAFT_1106at 1143.952 kb on - strand, within B158DRAFT_1106at 1143.954 kb on + strand, within B158DRAFT_1106at 1143.957 kb on - strand, within B158DRAFT_1106at 1143.957 kb on - strand, within B158DRAFT_1106at 1143.962 kb on - strand, within B158DRAFT_1106at 1143.962 kb on - strand, within B158DRAFT_1106at 1143.970 kb on + strand, within B158DRAFT_1106at 1143.978 kb on - strand, within B158DRAFT_1106at 1143.985 kb on - strand, within B158DRAFT_1106at 1144.108 kb on - strand, within B158DRAFT_1106at 1144.113 kb on - strand, within B158DRAFT_1106at 1144.155 kb on - strand, within B158DRAFT_1106at 1144.236 kb on - strand, within B158DRAFT_1106at 1144.312 kb on + strandat 1144.320 kb on - strandat 1144.386 kb on + strand, within B158DRAFT_1107at 1144.411 kb on - strand, within B158DRAFT_1107at 1144.452 kb on - strand, within B158DRAFT_1107at 1144.541 kb on - strand, within B158DRAFT_1107at 1144.541 kb on - strand, within B158DRAFT_1107at 1144.554 kb on + strand, within B158DRAFT_1107at 1144.554 kb on + strand, within B158DRAFT_1107at 1144.562 kb on - strand, within B158DRAFT_1107at 1144.562 kb on - strand, within B158DRAFT_1107at 1144.562 kb on - strand, within B158DRAFT_1107at 1144.562 kb on - strand, within B158DRAFT_1107at 1144.562 kb on - strand, within B158DRAFT_1107at 1144.592 kb on - strand, within B158DRAFT_1107at 1144.599 kb on + strand, within B158DRAFT_1107at 1144.642 kb on + strand, within B158DRAFT_1107at 1144.642 kb on + strand, within B158DRAFT_1107at 1144.650 kb on - strand, within B158DRAFT_1107at 1144.661 kb on - strand, within B158DRAFT_1107at 1144.661 kb on - strand, within B158DRAFT_1107at 1144.668 kb on - strand, within B158DRAFT_1107at 1144.669 kb on + strand, within B158DRAFT_1107at 1144.669 kb on + strand, within B158DRAFT_1107at 1144.677 kb on - strand, within B158DRAFT_1107at 1144.677 kb on - strand, within B158DRAFT_1107at 1144.704 kb on - strand, within B158DRAFT_1107at 1144.825 kb on - strand, within B158DRAFT_1107at 1144.825 kb on - strand, within B158DRAFT_1107at 1144.846 kb on + strandat 1144.868 kb on + strandat 1144.876 kb on - strandat 1144.885 kb on + strandat 1144.900 kb on + strandat 1145.028 kb on + strand, within B158DRAFT_1108at 1145.028 kb on + strand, within B158DRAFT_1108at 1145.036 kb on - strand, within B158DRAFT_1108at 1145.040 kb on + strand, within B158DRAFT_1108at 1145.079 kb on + strand, within B158DRAFT_1108at 1145.087 kb on - strand, within B158DRAFT_1108at 1145.102 kb on + strand, within B158DRAFT_1108at 1145.134 kb on - strandat 1145.159 kb on + strandat 1145.159 kb on + strandat 1145.200 kb on + strandat 1145.208 kb on - strandat 1145.208 kb on - strandat 1145.208 kb on - strandat 1145.218 kb on + strandat 1145.226 kb on - strandat 1145.322 kb on + strand, within B158DRAFT_1109at 1145.326 kb on + strand, within B158DRAFT_1109at 1145.350 kb on + strand, within B158DRAFT_1109at 1145.350 kb on + strand, within B158DRAFT_1109at 1145.350 kb on + strand, within B158DRAFT_1109at 1145.350 kb on + strand, within B158DRAFT_1109at 1145.357 kb on + strand, within B158DRAFT_1109at 1145.357 kb on + strand, within B158DRAFT_1109at 1145.357 kb on + strand, within B158DRAFT_1109at 1145.357 kb on + strand, within B158DRAFT_1109at 1145.357 kb on + strand, within B158DRAFT_1109at 1145.357 kb on + strand, within B158DRAFT_1109at 1145.357 kb on + strand, within B158DRAFT_1109at 1145.357 kb on + strand, within B158DRAFT_1109at 1145.357 kb on + strand, within B158DRAFT_1109at 1145.357 kb on + strand, within B158DRAFT_1109at 1145.357 kb on + strand, within B158DRAFT_1109at 1145.358 kb on - strand, within B158DRAFT_1109at 1145.358 kb on - strand, within B158DRAFT_1109at 1145.365 kb on - strand, within B158DRAFT_1109at 1145.365 kb on - strand, within B158DRAFT_1109at 1145.365 kb on - strand, within B158DRAFT_1109at 1145.409 kb on - strand, within B158DRAFT_1109at 1145.463 kb on + strand, within B158DRAFT_1109at 1145.471 kb on + strand, within B158DRAFT_1109at 1145.513 kb on + strand, within B158DRAFT_1109at 1145.513 kb on + strand, within B158DRAFT_1109at 1145.513 kb on + strand, within B158DRAFT_1109at 1145.513 kb on + strand, within B158DRAFT_1109at 1145.521 kb on - strand, within B158DRAFT_1109at 1145.576 kb on + strand, within B158DRAFT_1109at 1145.584 kb on - strand, within B158DRAFT_1109at 1145.612 kb on + strand, within B158DRAFT_1109at 1145.612 kb on + strand, within B158DRAFT_1109at 1145.612 kb on + strand, within B158DRAFT_1109at 1145.620 kb on - strand, within B158DRAFT_1109at 1145.620 kb on - strand, within B158DRAFT_1109at 1145.620 kb on - strand, within B158DRAFT_1109at 1145.620 kb on - strand, within B158DRAFT_1109at 1145.620 kb on - strand, within B158DRAFT_1109at 1145.644 kb on + strand, within B158DRAFT_1109at 1145.652 kb on - strand, within B158DRAFT_1109at 1145.652 kb on - strand, within B158DRAFT_1109at 1145.659 kb on + strand, within B158DRAFT_1109at 1145.659 kb on + strand, within B158DRAFT_1109at 1145.659 kb on + strand, within B158DRAFT_1109at 1145.679 kb on + strand, within B158DRAFT_1109at 1145.684 kb on + strand, within B158DRAFT_1109at 1145.793 kb on + strand, within B158DRAFT_1109at 1145.798 kb on + strand, within B158DRAFT_1109at 1145.798 kb on + strand, within B158DRAFT_1109at 1145.798 kb on + strand, within B158DRAFT_1109at 1145.798 kb on + strand, within B158DRAFT_1109at 1145.801 kb on - strand, within B158DRAFT_1109at 1145.839 kb on - strand, within B158DRAFT_1109at 1145.839 kb on - strand, within B158DRAFT_1109at 1145.875 kb on + strand, within B158DRAFT_1109at 1145.879 kb on + strand, within B158DRAFT_1109at 1145.887 kb on - strand, within B158DRAFT_1109at 1145.887 kb on - strand, within B158DRAFT_1109at 1145.889 kb on + strand, within B158DRAFT_1109at 1145.894 kb on + strand, within B158DRAFT_1109at 1145.894 kb on + strand, within B158DRAFT_1109at 1145.894 kb on + strand, within B158DRAFT_1109

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,143,442 + B158DRAFT_1105 0.33 -0.1
1,143,501 + B158DRAFT_1105 0.55 -0.4
1,143,509 - B158DRAFT_1105 0.58 +0.4
1,143,509 - B158DRAFT_1105 0.58 +0.4
1,143,509 - B158DRAFT_1105 0.58 +0.3
1,143,509 - B158DRAFT_1105 0.58 -0.2
1,143,558 - B158DRAFT_1105 0.75 -0.6
1,143,676 + -0.6
1,143,820 - B158DRAFT_1106 0.21 +0.1
1,143,846 + B158DRAFT_1106 0.26 -2.2
1,143,859 - B158DRAFT_1106 0.28 -0.5
1,143,859 - B158DRAFT_1106 0.28 -0.0
1,143,859 - B158DRAFT_1106 0.28 -0.4
1,143,933 - B158DRAFT_1106 0.40 -0.2
1,143,940 - B158DRAFT_1106 0.41 -0.1
1,143,940 - B158DRAFT_1106 0.41 +0.1
1,143,944 + B158DRAFT_1106 0.42 -0.2
1,143,944 + B158DRAFT_1106 0.42 +1.0
1,143,952 - B158DRAFT_1106 0.43 -0.5
1,143,952 - B158DRAFT_1106 0.43 -1.1
1,143,952 - B158DRAFT_1106 0.43 -0.1
1,143,952 - B158DRAFT_1106 0.43 -0.1
1,143,954 + B158DRAFT_1106 0.43 +0.5
1,143,957 - B158DRAFT_1106 0.44 +0.2
1,143,957 - B158DRAFT_1106 0.44 +0.1
1,143,962 - B158DRAFT_1106 0.45 +0.2
1,143,962 - B158DRAFT_1106 0.45 -2.8
1,143,970 + B158DRAFT_1106 0.46 +0.0
1,143,978 - B158DRAFT_1106 0.47 -0.2
1,143,985 - B158DRAFT_1106 0.48 -0.0
1,144,108 - B158DRAFT_1106 0.68 +0.1
1,144,113 - B158DRAFT_1106 0.69 -0.3
1,144,155 - B158DRAFT_1106 0.76 -0.5
1,144,236 - B158DRAFT_1106 0.89 -1.1
1,144,312 + +0.2
1,144,320 - +0.5
1,144,386 + B158DRAFT_1107 0.12 -0.1
1,144,411 - B158DRAFT_1107 0.17 +0.0
1,144,452 - B158DRAFT_1107 0.24 -0.6
1,144,541 - B158DRAFT_1107 0.39 -0.2
1,144,541 - B158DRAFT_1107 0.39 -0.2
1,144,554 + B158DRAFT_1107 0.41 +0.7
1,144,554 + B158DRAFT_1107 0.41 +0.2
1,144,562 - B158DRAFT_1107 0.42 -0.3
1,144,562 - B158DRAFT_1107 0.42 -1.0
1,144,562 - B158DRAFT_1107 0.42 -0.1
1,144,562 - B158DRAFT_1107 0.42 -0.2
1,144,562 - B158DRAFT_1107 0.42 +0.1
1,144,592 - B158DRAFT_1107 0.48 +0.2
1,144,599 + B158DRAFT_1107 0.49 +0.4
1,144,642 + B158DRAFT_1107 0.56 +1.3
1,144,642 + B158DRAFT_1107 0.56 -0.1
1,144,650 - B158DRAFT_1107 0.57 +0.1
1,144,661 - B158DRAFT_1107 0.59 +0.6
1,144,661 - B158DRAFT_1107 0.59 +0.3
1,144,668 - B158DRAFT_1107 0.61 -0.4
1,144,669 + B158DRAFT_1107 0.61 -0.1
1,144,669 + B158DRAFT_1107 0.61 +0.2
1,144,677 - B158DRAFT_1107 0.62 -0.8
1,144,677 - B158DRAFT_1107 0.62 +0.4
1,144,704 - B158DRAFT_1107 0.67 +0.0
1,144,825 - B158DRAFT_1107 0.87 -0.0
1,144,825 - B158DRAFT_1107 0.87 -0.1
1,144,846 + -0.3
1,144,868 + +0.7
1,144,876 - -0.1
1,144,885 + +0.1
1,144,900 + -1.4
1,145,028 + B158DRAFT_1108 0.24 -0.4
1,145,028 + B158DRAFT_1108 0.24 -0.5
1,145,036 - B158DRAFT_1108 0.29 -0.7
1,145,040 + B158DRAFT_1108 0.32 +1.4
1,145,079 + B158DRAFT_1108 0.59 -0.4
1,145,087 - B158DRAFT_1108 0.64 -0.2
1,145,102 + B158DRAFT_1108 0.74 -0.0
1,145,134 - +0.0
1,145,159 + -0.1
1,145,159 + +0.3
1,145,200 + -0.2
1,145,208 - -0.5
1,145,208 - +0.1
1,145,208 - -0.4
1,145,218 + +0.1
1,145,226 - -0.4
1,145,322 + B158DRAFT_1109 0.12 +0.6
1,145,326 + B158DRAFT_1109 0.13 +0.1
1,145,350 + B158DRAFT_1109 0.14 +0.5
1,145,350 + B158DRAFT_1109 0.14 -0.1
1,145,350 + B158DRAFT_1109 0.14 -0.1
1,145,350 + B158DRAFT_1109 0.14 -0.3
1,145,357 + B158DRAFT_1109 0.15 +0.1
1,145,357 + B158DRAFT_1109 0.15 -1.6
1,145,357 + B158DRAFT_1109 0.15 -0.4
1,145,357 + B158DRAFT_1109 0.15 -1.0
1,145,357 + B158DRAFT_1109 0.15 -1.6
1,145,357 + B158DRAFT_1109 0.15 -0.1
1,145,357 + B158DRAFT_1109 0.15 +0.1
1,145,357 + B158DRAFT_1109 0.15 -0.9
1,145,357 + B158DRAFT_1109 0.15 -0.1
1,145,357 + B158DRAFT_1109 0.15 +0.7
1,145,357 + B158DRAFT_1109 0.15 +0.4
1,145,358 - B158DRAFT_1109 0.15 +1.5
1,145,358 - B158DRAFT_1109 0.15 +1.2
1,145,365 - B158DRAFT_1109 0.15 +0.3
1,145,365 - B158DRAFT_1109 0.15 +0.2
1,145,365 - B158DRAFT_1109 0.15 -0.4
1,145,409 - B158DRAFT_1109 0.18 -0.2
1,145,463 + B158DRAFT_1109 0.22 -1.6
1,145,471 + B158DRAFT_1109 0.23 +0.4
1,145,513 + B158DRAFT_1109 0.26 -0.4
1,145,513 + B158DRAFT_1109 0.26 -0.7
1,145,513 + B158DRAFT_1109 0.26 -0.1
1,145,513 + B158DRAFT_1109 0.26 +0.5
1,145,521 - B158DRAFT_1109 0.26 -0.5
1,145,576 + B158DRAFT_1109 0.30 -0.3
1,145,584 - B158DRAFT_1109 0.31 -0.2
1,145,612 + B158DRAFT_1109 0.32 -0.2
1,145,612 + B158DRAFT_1109 0.32 +0.5
1,145,612 + B158DRAFT_1109 0.32 -0.2
1,145,620 - B158DRAFT_1109 0.33 -0.6
1,145,620 - B158DRAFT_1109 0.33 +0.2
1,145,620 - B158DRAFT_1109 0.33 -0.0
1,145,620 - B158DRAFT_1109 0.33 -0.1
1,145,620 - B158DRAFT_1109 0.33 +0.0
1,145,644 + B158DRAFT_1109 0.35 -0.3
1,145,652 - B158DRAFT_1109 0.35 -0.3
1,145,652 - B158DRAFT_1109 0.35 -0.4
1,145,659 + B158DRAFT_1109 0.36 +0.8
1,145,659 + B158DRAFT_1109 0.36 +0.3
1,145,659 + B158DRAFT_1109 0.36 -0.0
1,145,679 + B158DRAFT_1109 0.37 -0.3
1,145,684 + B158DRAFT_1109 0.37 +0.0
1,145,793 + B158DRAFT_1109 0.45 -1.5
1,145,798 + B158DRAFT_1109 0.45 +0.3
1,145,798 + B158DRAFT_1109 0.45 -0.3
1,145,798 + B158DRAFT_1109 0.45 +0.3
1,145,798 + B158DRAFT_1109 0.45 -3.4
1,145,801 - B158DRAFT_1109 0.45 -0.6
1,145,839 - B158DRAFT_1109 0.48 +0.4
1,145,839 - B158DRAFT_1109 0.48 -0.0
1,145,875 + B158DRAFT_1109 0.51 +0.2
1,145,879 + B158DRAFT_1109 0.51 -0.1
1,145,887 - B158DRAFT_1109 0.51 +0.6
1,145,887 - B158DRAFT_1109 0.51 +0.1
1,145,889 + B158DRAFT_1109 0.52 -0.3
1,145,894 + B158DRAFT_1109 0.52 +0.2
1,145,894 + B158DRAFT_1109 0.52 +0.3
1,145,894 + B158DRAFT_1109 0.52 +0.1

Or see this region's nucleotide sequence