Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0860

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0859 and B158DRAFT_0860 are separated by 164 nucleotidesB158DRAFT_0860 and B158DRAFT_0861 are separated by 85 nucleotidesB158DRAFT_0861 and B158DRAFT_0862 are separated by 156 nucleotides B158DRAFT_0859: B158DRAFT_0859 - putative efflux protein, MATE family, at 878,127 to 879,455 _0859 B158DRAFT_0860: B158DRAFT_0860 - Sensors of blue-light using FAD., at 879,620 to 880,051 _0860 B158DRAFT_0861: B158DRAFT_0861 - Cytochrome b, at 880,137 to 880,691 _0861 B158DRAFT_0862: B158DRAFT_0862 - Zinc-binding domain of primase-helicase., at 880,848 to 881,009 _0862 Position (kb) 879 880 881Strain fitness (log2 ratio) -3 -2 -1 0 1at 878.668 kb on + strand, within B158DRAFT_0859at 878.676 kb on - strand, within B158DRAFT_0859at 878.699 kb on - strand, within B158DRAFT_0859at 878.887 kb on + strand, within B158DRAFT_0859at 878.927 kb on + strand, within B158DRAFT_0859at 878.927 kb on + strand, within B158DRAFT_0859at 878.935 kb on - strand, within B158DRAFT_0859at 878.953 kb on + strand, within B158DRAFT_0859at 878.963 kb on - strand, within B158DRAFT_0859at 878.963 kb on - strand, within B158DRAFT_0859at 879.002 kb on - strand, within B158DRAFT_0859at 879.235 kb on - strand, within B158DRAFT_0859at 879.342 kb on - strandat 879.342 kb on - strandat 879.342 kb on - strandat 879.342 kb on - strandat 879.342 kb on - strandat 879.353 kb on + strandat 879.354 kb on - strandat 879.411 kb on - strandat 879.453 kb on - strandat 879.497 kb on + strandat 879.516 kb on + strandat 879.517 kb on - strandat 879.519 kb on + strandat 879.524 kb on - strandat 879.524 kb on - strandat 879.526 kb on + strandat 879.526 kb on + strandat 879.526 kb on + strandat 879.526 kb on + strandat 879.526 kb on + strandat 879.531 kb on + strandat 879.531 kb on + strandat 879.531 kb on + strandat 879.531 kb on + strandat 879.531 kb on + strandat 879.531 kb on + strandat 879.534 kb on - strandat 879.534 kb on - strandat 879.534 kb on - strandat 879.534 kb on - strandat 879.534 kb on - strandat 879.539 kb on - strandat 879.573 kb on + strandat 879.578 kb on + strandat 879.586 kb on - strandat 879.651 kb on + strandat 879.693 kb on - strand, within B158DRAFT_0860at 879.796 kb on + strand, within B158DRAFT_0860at 879.804 kb on + strand, within B158DRAFT_0860at 879.804 kb on - strand, within B158DRAFT_0860at 879.804 kb on - strand, within B158DRAFT_0860at 879.812 kb on - strand, within B158DRAFT_0860at 879.835 kb on - strand, within B158DRAFT_0860at 879.926 kb on - strand, within B158DRAFT_0860at 879.936 kb on - strand, within B158DRAFT_0860at 879.936 kb on - strand, within B158DRAFT_0860at 879.958 kb on + strand, within B158DRAFT_0860at 879.966 kb on - strand, within B158DRAFT_0860at 879.966 kb on - strand, within B158DRAFT_0860at 879.997 kb on + strand, within B158DRAFT_0860at 880.009 kb on + strandat 880.012 kb on - strandat 880.047 kb on + strandat 880.080 kb on - strandat 880.102 kb on + strandat 880.102 kb on + strandat 880.102 kb on + strandat 880.102 kb on + strandat 880.102 kb on + strandat 880.109 kb on - strandat 880.110 kb on - strandat 880.110 kb on - strandat 880.112 kb on + strandat 880.112 kb on + strandat 880.112 kb on + strandat 880.120 kb on - strandat 880.150 kb on + strandat 880.158 kb on - strandat 880.188 kb on + strandat 880.188 kb on - strandat 880.188 kb on - strandat 880.238 kb on + strand, within B158DRAFT_0861at 880.250 kb on + strand, within B158DRAFT_0861at 880.270 kb on + strand, within B158DRAFT_0861at 880.270 kb on + strand, within B158DRAFT_0861at 880.270 kb on + strand, within B158DRAFT_0861at 880.275 kb on + strand, within B158DRAFT_0861at 880.278 kb on - strand, within B158DRAFT_0861at 880.286 kb on + strand, within B158DRAFT_0861at 880.288 kb on - strand, within B158DRAFT_0861at 880.291 kb on + strand, within B158DRAFT_0861at 880.291 kb on + strand, within B158DRAFT_0861at 880.291 kb on + strand, within B158DRAFT_0861at 880.294 kb on - strand, within B158DRAFT_0861at 880.294 kb on - strand, within B158DRAFT_0861at 880.304 kb on - strand, within B158DRAFT_0861at 880.304 kb on - strand, within B158DRAFT_0861at 880.304 kb on - strand, within B158DRAFT_0861at 880.354 kb on + strand, within B158DRAFT_0861at 880.354 kb on + strand, within B158DRAFT_0861at 880.362 kb on - strand, within B158DRAFT_0861at 880.364 kb on + strand, within B158DRAFT_0861at 880.364 kb on + strand, within B158DRAFT_0861at 880.364 kb on + strand, within B158DRAFT_0861at 880.380 kb on + strand, within B158DRAFT_0861at 880.470 kb on + strand, within B158DRAFT_0861at 880.513 kb on + strand, within B158DRAFT_0861at 880.521 kb on - strand, within B158DRAFT_0861at 880.521 kb on - strand, within B158DRAFT_0861at 880.521 kb on - strand, within B158DRAFT_0861at 880.529 kb on + strand, within B158DRAFT_0861at 880.532 kb on - strand, within B158DRAFT_0861at 880.568 kb on + strand, within B158DRAFT_0861at 880.582 kb on + strand, within B158DRAFT_0861at 880.624 kb on - strand, within B158DRAFT_0861at 880.637 kb on + strandat 880.645 kb on - strandat 880.645 kb on - strandat 880.670 kb on + strandat 880.670 kb on + strandat 880.684 kb on + strandat 880.693 kb on + strandat 880.750 kb on + strandat 880.795 kb on - strandat 880.817 kb on - strandat 880.870 kb on + strand, within B158DRAFT_0862at 880.934 kb on - strand, within B158DRAFT_0862at 880.981 kb on + strand, within B158DRAFT_0862at 880.981 kb on + strand, within B158DRAFT_0862at 880.981 kb on + strand, within B158DRAFT_0862at 880.981 kb on + strand, within B158DRAFT_0862at 880.981 kb on + strand, within B158DRAFT_0862at 880.989 kb on - strand, within B158DRAFT_0862at 880.989 kb on - strand, within B158DRAFT_0862at 880.989 kb on - strand, within B158DRAFT_0862at 881.007 kb on + strandat 881.007 kb on + strandat 881.007 kb on + strandat 881.007 kb on + strandat 881.015 kb on - strandat 881.015 kb on - strandat 881.015 kb on - strandat 881.015 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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878,668 + B158DRAFT_0859 0.41 -1.6
878,676 - B158DRAFT_0859 0.41 -2.4
878,699 - B158DRAFT_0859 0.43 -1.1
878,887 + B158DRAFT_0859 0.57 -1.4
878,927 + B158DRAFT_0859 0.60 -1.8
878,927 + B158DRAFT_0859 0.60 -1.6
878,935 - B158DRAFT_0859 0.61 -2.5
878,953 + B158DRAFT_0859 0.62 -3.1
878,963 - B158DRAFT_0859 0.63 -2.5
878,963 - B158DRAFT_0859 0.63 -2.0
879,002 - B158DRAFT_0859 0.66 -2.0
879,235 - B158DRAFT_0859 0.83 -2.0
879,342 - -1.0
879,342 - -2.0
879,342 - -2.1
879,342 - -1.6
879,342 - +0.2
879,353 + -1.1
879,354 - +0.2
879,411 - -2.3
879,453 - -0.8
879,497 + +0.5
879,516 + -0.3
879,517 - -1.6
879,519 + +0.5
879,524 - -0.4
879,524 - -0.5
879,526 + -0.3
879,526 + -0.7
879,526 + +0.2
879,526 + +0.1
879,526 + -0.5
879,531 + +0.0
879,531 + +1.2
879,531 + -0.1
879,531 + -1.2
879,531 + -0.4
879,531 + -0.4
879,534 - +0.2
879,534 - -0.1
879,534 - -0.6
879,534 - +0.7
879,534 - -0.6
879,539 - +0.3
879,573 + -0.2
879,578 + -0.1
879,586 - -0.4
879,651 + -0.4
879,693 - B158DRAFT_0860 0.17 -1.0
879,796 + B158DRAFT_0860 0.41 -0.2
879,804 + B158DRAFT_0860 0.43 -0.4
879,804 - B158DRAFT_0860 0.43 +0.3
879,804 - B158DRAFT_0860 0.43 +0.2
879,812 - B158DRAFT_0860 0.44 -0.1
879,835 - B158DRAFT_0860 0.50 -0.5
879,926 - B158DRAFT_0860 0.71 -0.5
879,936 - B158DRAFT_0860 0.73 +0.1
879,936 - B158DRAFT_0860 0.73 -0.5
879,958 + B158DRAFT_0860 0.78 -0.1
879,966 - B158DRAFT_0860 0.80 +0.8
879,966 - B158DRAFT_0860 0.80 -0.8
879,997 + B158DRAFT_0860 0.87 -1.0
880,009 + -0.2
880,012 - -0.4
880,047 + -0.1
880,080 - +0.1
880,102 + +0.7
880,102 + -0.5
880,102 + -0.3
880,102 + -0.2
880,102 + +1.2
880,109 - -0.2
880,110 - +0.2
880,110 - -0.6
880,112 + -0.3
880,112 + -0.8
880,112 + -0.1
880,120 - +0.4
880,150 + -0.7
880,158 - -0.1
880,188 + +0.0
880,188 - -0.6
880,188 - +0.3
880,238 + B158DRAFT_0861 0.18 +0.4
880,250 + B158DRAFT_0861 0.20 +0.7
880,270 + B158DRAFT_0861 0.24 +0.0
880,270 + B158DRAFT_0861 0.24 +0.0
880,270 + B158DRAFT_0861 0.24 -0.3
880,275 + B158DRAFT_0861 0.25 +0.1
880,278 - B158DRAFT_0861 0.25 -0.2
880,286 + B158DRAFT_0861 0.27 -0.3
880,288 - B158DRAFT_0861 0.27 +0.0
880,291 + B158DRAFT_0861 0.28 -0.4
880,291 + B158DRAFT_0861 0.28 -0.1
880,291 + B158DRAFT_0861 0.28 +0.1
880,294 - B158DRAFT_0861 0.28 -1.4
880,294 - B158DRAFT_0861 0.28 +0.2
880,304 - B158DRAFT_0861 0.30 +0.2
880,304 - B158DRAFT_0861 0.30 +0.3
880,304 - B158DRAFT_0861 0.30 -0.4
880,354 + B158DRAFT_0861 0.39 -0.4
880,354 + B158DRAFT_0861 0.39 -0.1
880,362 - B158DRAFT_0861 0.41 +0.4
880,364 + B158DRAFT_0861 0.41 +0.2
880,364 + B158DRAFT_0861 0.41 -0.0
880,364 + B158DRAFT_0861 0.41 +0.6
880,380 + B158DRAFT_0861 0.44 -0.5
880,470 + B158DRAFT_0861 0.60 +0.0
880,513 + B158DRAFT_0861 0.68 -0.1
880,521 - B158DRAFT_0861 0.69 -0.1
880,521 - B158DRAFT_0861 0.69 -0.1
880,521 - B158DRAFT_0861 0.69 -0.2
880,529 + B158DRAFT_0861 0.71 -0.4
880,532 - B158DRAFT_0861 0.71 +0.2
880,568 + B158DRAFT_0861 0.78 +0.3
880,582 + B158DRAFT_0861 0.80 +0.1
880,624 - B158DRAFT_0861 0.88 -0.4
880,637 + -0.5
880,645 - -0.8
880,645 - -0.1
880,670 + -0.7
880,670 + +0.1
880,684 + +0.6
880,693 + -0.3
880,750 + -0.2
880,795 - -0.6
880,817 - -0.5
880,870 + B158DRAFT_0862 0.14 +0.5
880,934 - B158DRAFT_0862 0.53 -0.3
880,981 + B158DRAFT_0862 0.82 -0.7
880,981 + B158DRAFT_0862 0.82 -0.0
880,981 + B158DRAFT_0862 0.82 +0.2
880,981 + B158DRAFT_0862 0.82 +0.1
880,981 + B158DRAFT_0862 0.82 -1.0
880,989 - B158DRAFT_0862 0.87 +0.4
880,989 - B158DRAFT_0862 0.87 +0.2
880,989 - B158DRAFT_0862 0.87 -0.6
881,007 + -0.2
881,007 + +0.0
881,007 + +0.0
881,007 + -0.1
881,015 - +0.1
881,015 - -0.2
881,015 - -0.3
881,015 - -0.0

Or see this region's nucleotide sequence