Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0723 and B158DRAFT_0724 are separated by 23 nucleotides B158DRAFT_0724 and B158DRAFT_0725 are separated by 172 nucleotides
B158DRAFT_0723: B158DRAFT_0723 - diguanylate cyclase (GGDEF) domain, at 723,235 to 725,304
_0723
B158DRAFT_0724: B158DRAFT_0724 - diguanylate cyclase (GGDEF) domain, at 725,328 to 727,466
_0724
B158DRAFT_0725: B158DRAFT_0725 - GTP-binding protein TypA/BipA, at 727,639 to 729,462
_0725
Position (kb) 725
726
727
728 Strain fitness (log2 ratio) -1
0
1
2 at 724.374 kb on + strand, within B158DRAFT_0723 at 724.657 kb on + strand, within B158DRAFT_0723 at 724.657 kb on + strand, within B158DRAFT_0723 at 724.665 kb on - strand, within B158DRAFT_0723 at 724.665 kb on - strand, within B158DRAFT_0723 at 724.665 kb on - strand, within B158DRAFT_0723 at 724.674 kb on + strand, within B158DRAFT_0723 at 724.705 kb on + strand, within B158DRAFT_0723 at 724.728 kb on + strand, within B158DRAFT_0723 at 724.778 kb on - strand, within B158DRAFT_0723 at 725.177 kb on + strand at 725.190 kb on - strand at 725.382 kb on + strand at 725.390 kb on - strand at 725.454 kb on - strand at 725.768 kb on - strand, within B158DRAFT_0724 at 725.794 kb on - strand, within B158DRAFT_0724 at 725.794 kb on - strand, within B158DRAFT_0724 at 725.859 kb on + strand, within B158DRAFT_0724 at 726.095 kb on - strand, within B158DRAFT_0724 at 726.371 kb on + strand, within B158DRAFT_0724 at 726.591 kb on - strand, within B158DRAFT_0724 at 726.627 kb on + strand, within B158DRAFT_0724 at 726.638 kb on + strand, within B158DRAFT_0724 at 726.705 kb on + strand, within B158DRAFT_0724 at 726.857 kb on + strand, within B158DRAFT_0724 at 726.865 kb on - strand, within B158DRAFT_0724 at 727.048 kb on - strand, within B158DRAFT_0724 at 727.091 kb on + strand, within B158DRAFT_0724 at 727.091 kb on + strand, within B158DRAFT_0724 at 727.091 kb on + strand, within B158DRAFT_0724 at 727.091 kb on + strand, within B158DRAFT_0724 at 727.099 kb on - strand, within B158DRAFT_0724 at 727.099 kb on - strand, within B158DRAFT_0724 at 727.339 kb on + strand at 727.347 kb on - strand at 727.362 kb on - strand at 727.485 kb on + strand at 727.486 kb on - strand at 727.603 kb on - strand at 727.681 kb on + strand at 727.730 kb on + strand at 727.870 kb on - strand, within B158DRAFT_0725 at 727.921 kb on + strand, within B158DRAFT_0725 at 727.921 kb on + strand, within B158DRAFT_0725 at 727.921 kb on + strand, within B158DRAFT_0725 at 727.921 kb on + strand, within B158DRAFT_0725 at 727.921 kb on + strand, within B158DRAFT_0725 at 727.921 kb on + strand, within B158DRAFT_0725 at 727.921 kb on + strand, within B158DRAFT_0725 at 727.921 kb on + strand, within B158DRAFT_0725 at 727.921 kb on + strand, within B158DRAFT_0725 at 727.929 kb on - strand, within B158DRAFT_0725 at 727.929 kb on - strand, within B158DRAFT_0725 at 727.950 kb on + strand, within B158DRAFT_0725 at 727.950 kb on - strand, within B158DRAFT_0725 at 728.052 kb on - strand, within B158DRAFT_0725 at 728.124 kb on + strand, within B158DRAFT_0725 at 728.124 kb on + strand, within B158DRAFT_0725 at 728.145 kb on - strand, within B158DRAFT_0725 at 728.179 kb on - strand, within B158DRAFT_0725 at 728.277 kb on - strand, within B158DRAFT_0725 at 728.405 kb on - strand, within B158DRAFT_0725 at 728.406 kb on - strand, within B158DRAFT_0725
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 724,374 + B158DRAFT_0723 0.55 +0.4 724,657 + B158DRAFT_0723 0.69 -0.0 724,657 + B158DRAFT_0723 0.69 -0.1 724,665 - B158DRAFT_0723 0.69 +0.1 724,665 - B158DRAFT_0723 0.69 +0.0 724,665 - B158DRAFT_0723 0.69 -0.5 724,674 + B158DRAFT_0723 0.70 +0.1 724,705 + B158DRAFT_0723 0.71 +0.2 724,728 + B158DRAFT_0723 0.72 +0.2 724,778 - B158DRAFT_0723 0.75 +0.7 725,177 + +0.3 725,190 - -0.7 725,382 + -0.4 725,390 - -0.6 725,454 - +1.0 725,768 - B158DRAFT_0724 0.21 -0.5 725,794 - B158DRAFT_0724 0.22 -0.8 725,794 - B158DRAFT_0724 0.22 -0.4 725,859 + B158DRAFT_0724 0.25 -1.0 726,095 - B158DRAFT_0724 0.36 -0.4 726,371 + B158DRAFT_0724 0.49 -0.1 726,591 - B158DRAFT_0724 0.59 -0.3 726,627 + B158DRAFT_0724 0.61 -0.5 726,638 + B158DRAFT_0724 0.61 +0.2 726,705 + B158DRAFT_0724 0.64 -0.3 726,857 + B158DRAFT_0724 0.71 -0.1 726,865 - B158DRAFT_0724 0.72 -0.2 727,048 - B158DRAFT_0724 0.80 -0.2 727,091 + B158DRAFT_0724 0.82 -0.8 727,091 + B158DRAFT_0724 0.82 -0.2 727,091 + B158DRAFT_0724 0.82 +0.4 727,091 + B158DRAFT_0724 0.82 -0.8 727,099 - B158DRAFT_0724 0.83 -0.6 727,099 - B158DRAFT_0724 0.83 -0.3 727,339 + -0.2 727,347 - -1.3 727,362 - -0.4 727,485 + +0.2 727,486 - +0.3 727,603 - +0.0 727,681 + +0.4 727,730 + -0.1 727,870 - B158DRAFT_0725 0.13 +0.2 727,921 + B158DRAFT_0725 0.15 -1.2 727,921 + B158DRAFT_0725 0.15 +0.1 727,921 + B158DRAFT_0725 0.15 +0.4 727,921 + B158DRAFT_0725 0.15 +0.3 727,921 + B158DRAFT_0725 0.15 +0.1 727,921 + B158DRAFT_0725 0.15 +0.4 727,921 + B158DRAFT_0725 0.15 +0.1 727,921 + B158DRAFT_0725 0.15 -0.5 727,921 + B158DRAFT_0725 0.15 -0.0 727,929 - B158DRAFT_0725 0.16 -0.5 727,929 - B158DRAFT_0725 0.16 -0.2 727,950 + B158DRAFT_0725 0.17 -0.4 727,950 - B158DRAFT_0725 0.17 -1.0 728,052 - B158DRAFT_0725 0.23 +0.3 728,124 + B158DRAFT_0725 0.27 +2.0 728,124 + B158DRAFT_0725 0.27 -0.2 728,145 - B158DRAFT_0725 0.28 +0.1 728,179 - B158DRAFT_0725 0.30 -0.6 728,277 - B158DRAFT_0725 0.35 +0.3 728,405 - B158DRAFT_0725 0.42 +0.1 728,406 - B158DRAFT_0725 0.42 +0.3
Or see this region's nucleotide sequence