Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0722

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0719 and B158DRAFT_0720 are separated by 10 nucleotidesB158DRAFT_0720 and B158DRAFT_0721 overlap by 4 nucleotidesB158DRAFT_0721 and B158DRAFT_0722 overlap by 4 nucleotidesB158DRAFT_0722 and B158DRAFT_0723 are separated by 284 nucleotides B158DRAFT_0719: B158DRAFT_0719 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 719,925 to 720,947 _0719 B158DRAFT_0720: B158DRAFT_0720 - hypothetical protein, at 720,958 to 721,635 _0720 B158DRAFT_0721: B158DRAFT_0721 - Predicted redox protein, regulator of disulfide bond formation, at 721,632 to 721,865 _0721 B158DRAFT_0722: B158DRAFT_0722 - Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain, at 721,862 to 722,950 _0722 B158DRAFT_0723: B158DRAFT_0723 - diguanylate cyclase (GGDEF) domain, at 723,235 to 725,304 _0723 Position (kb) 721 722 723Strain fitness (log2 ratio) -1 0 1at 720.915 kb on + strandat 720.917 kb on - strandat 721.094 kb on + strand, within B158DRAFT_0720at 721.210 kb on - strand, within B158DRAFT_0720at 721.280 kb on + strand, within B158DRAFT_0720at 721.524 kb on + strand, within B158DRAFT_0720at 721.547 kb on + strand, within B158DRAFT_0720at 721.567 kb on - strand, within B158DRAFT_0720at 721.711 kb on - strand, within B158DRAFT_0721at 721.738 kb on + strand, within B158DRAFT_0721at 721.738 kb on + strand, within B158DRAFT_0721at 721.745 kb on + strand, within B158DRAFT_0721at 721.745 kb on + strand, within B158DRAFT_0721at 721.746 kb on - strand, within B158DRAFT_0721at 721.746 kb on - strand, within B158DRAFT_0721at 721.832 kb on + strand, within B158DRAFT_0721at 721.840 kb on - strand, within B158DRAFT_0721at 721.842 kb on + strandat 721.918 kb on + strandat 722.045 kb on + strand, within B158DRAFT_0722at 722.053 kb on - strand, within B158DRAFT_0722at 722.058 kb on + strand, within B158DRAFT_0722at 722.075 kb on - strand, within B158DRAFT_0722at 722.196 kb on - strand, within B158DRAFT_0722at 722.290 kb on - strand, within B158DRAFT_0722at 722.296 kb on + strand, within B158DRAFT_0722at 722.356 kb on - strand, within B158DRAFT_0722at 722.356 kb on - strand, within B158DRAFT_0722at 722.385 kb on + strand, within B158DRAFT_0722at 722.388 kb on - strand, within B158DRAFT_0722at 722.436 kb on + strand, within B158DRAFT_0722at 722.460 kb on - strand, within B158DRAFT_0722at 722.542 kb on + strand, within B158DRAFT_0722at 722.562 kb on + strand, within B158DRAFT_0722at 722.568 kb on + strand, within B158DRAFT_0722at 722.576 kb on - strand, within B158DRAFT_0722at 722.576 kb on - strand, within B158DRAFT_0722at 722.576 kb on - strand, within B158DRAFT_0722at 722.576 kb on - strand, within B158DRAFT_0722at 722.616 kb on + strand, within B158DRAFT_0722at 722.616 kb on + strand, within B158DRAFT_0722at 722.616 kb on + strand, within B158DRAFT_0722at 722.617 kb on + strand, within B158DRAFT_0722at 722.618 kb on + strand, within B158DRAFT_0722at 722.618 kb on + strand, within B158DRAFT_0722at 722.618 kb on + strand, within B158DRAFT_0722at 722.624 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.648 kb on - strand, within B158DRAFT_0722at 722.703 kb on - strand, within B158DRAFT_0722at 722.718 kb on - strand, within B158DRAFT_0722at 722.720 kb on + strand, within B158DRAFT_0722at 722.720 kb on + strand, within B158DRAFT_0722at 722.728 kb on - strand, within B158DRAFT_0722at 722.783 kb on - strand, within B158DRAFT_0722at 722.783 kb on - strand, within B158DRAFT_0722at 722.872 kb on - strandat 722.892 kb on + strandat 722.910 kb on - strandat 722.976 kb on + strandat 723.027 kb on + strandat 723.027 kb on + strandat 723.050 kb on + strandat 723.139 kb on + strandat 723.139 kb on + strandat 723.213 kb on - strandat 723.281 kb on + strandat 723.289 kb on - strandat 723.344 kb on - strandat 723.344 kb on - strandat 723.393 kb on - strandat 723.401 kb on - strandat 723.406 kb on + strandat 723.438 kb on + strandat 723.551 kb on + strand, within B158DRAFT_0723at 723.560 kb on + strand, within B158DRAFT_0723at 723.560 kb on + strand, within B158DRAFT_0723at 723.561 kb on + strand, within B158DRAFT_0723at 723.568 kb on - strand, within B158DRAFT_0723at 723.667 kb on - strand, within B158DRAFT_0723at 723.749 kb on + strand, within B158DRAFT_0723at 723.854 kb on - strand, within B158DRAFT_0723at 723.919 kb on - strand, within B158DRAFT_0723at 723.950 kb on + strand, within B158DRAFT_0723

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
720,915 + -0.1
720,917 - +0.2
721,094 + B158DRAFT_0720 0.20 -0.5
721,210 - B158DRAFT_0720 0.37 +0.1
721,280 + B158DRAFT_0720 0.47 +0.1
721,524 + B158DRAFT_0720 0.83 -0.8
721,547 + B158DRAFT_0720 0.87 -0.2
721,567 - B158DRAFT_0720 0.90 +0.5
721,711 - B158DRAFT_0721 0.34 +0.3
721,738 + B158DRAFT_0721 0.45 +1.4
721,738 + B158DRAFT_0721 0.45 +0.9
721,745 + B158DRAFT_0721 0.48 +0.2
721,745 + B158DRAFT_0721 0.48 -0.5
721,746 - B158DRAFT_0721 0.49 -0.1
721,746 - B158DRAFT_0721 0.49 -0.2
721,832 + B158DRAFT_0721 0.85 +1.2
721,840 - B158DRAFT_0721 0.89 +0.1
721,842 + +0.3
721,918 + +0.3
722,045 + B158DRAFT_0722 0.17 +0.1
722,053 - B158DRAFT_0722 0.18 -0.4
722,058 + B158DRAFT_0722 0.18 +0.5
722,075 - B158DRAFT_0722 0.20 -0.4
722,196 - B158DRAFT_0722 0.31 +0.8
722,290 - B158DRAFT_0722 0.39 +0.3
722,296 + B158DRAFT_0722 0.40 -0.4
722,356 - B158DRAFT_0722 0.45 +0.2
722,356 - B158DRAFT_0722 0.45 -0.2
722,385 + B158DRAFT_0722 0.48 +0.1
722,388 - B158DRAFT_0722 0.48 -0.7
722,436 + B158DRAFT_0722 0.53 -0.8
722,460 - B158DRAFT_0722 0.55 +0.1
722,542 + B158DRAFT_0722 0.62 +0.3
722,562 + B158DRAFT_0722 0.64 +0.2
722,568 + B158DRAFT_0722 0.65 +0.3
722,576 - B158DRAFT_0722 0.66 +0.6
722,576 - B158DRAFT_0722 0.66 +0.5
722,576 - B158DRAFT_0722 0.66 +0.1
722,576 - B158DRAFT_0722 0.66 +0.0
722,616 + B158DRAFT_0722 0.69 +0.1
722,616 + B158DRAFT_0722 0.69 +0.7
722,616 + B158DRAFT_0722 0.69 -0.4
722,617 + B158DRAFT_0722 0.69 +0.1
722,618 + B158DRAFT_0722 0.69 +0.0
722,618 + B158DRAFT_0722 0.69 -0.1
722,618 + B158DRAFT_0722 0.69 -0.2
722,624 - B158DRAFT_0722 0.70 -0.0
722,626 - B158DRAFT_0722 0.70 +0.1
722,626 - B158DRAFT_0722 0.70 -0.5
722,626 - B158DRAFT_0722 0.70 +0.2
722,626 - B158DRAFT_0722 0.70 -1.4
722,626 - B158DRAFT_0722 0.70 -1.1
722,626 - B158DRAFT_0722 0.70 +0.8
722,648 - B158DRAFT_0722 0.72 +0.5
722,703 - B158DRAFT_0722 0.77 +0.5
722,718 - B158DRAFT_0722 0.79 -0.4
722,720 + B158DRAFT_0722 0.79 +0.1
722,720 + B158DRAFT_0722 0.79 +0.4
722,728 - B158DRAFT_0722 0.80 -0.0
722,783 - B158DRAFT_0722 0.85 -0.6
722,783 - B158DRAFT_0722 0.85 -0.2
722,872 - +0.3
722,892 + -0.1
722,910 - -0.1
722,976 + +0.2
723,027 + +0.0
723,027 + +0.0
723,050 + -0.1
723,139 + +0.1
723,139 + -0.0
723,213 - -0.4
723,281 + -0.9
723,289 - +0.5
723,344 - -0.5
723,344 - -0.5
723,393 - +0.3
723,401 - -0.4
723,406 + +0.0
723,438 + +0.8
723,551 + B158DRAFT_0723 0.15 -0.3
723,560 + B158DRAFT_0723 0.16 -0.3
723,560 + B158DRAFT_0723 0.16 -0.3
723,561 + B158DRAFT_0723 0.16 -0.2
723,568 - B158DRAFT_0723 0.16 +0.0
723,667 - B158DRAFT_0723 0.21 -0.7
723,749 + B158DRAFT_0723 0.25 +0.3
723,854 - B158DRAFT_0723 0.30 -0.3
723,919 - B158DRAFT_0723 0.33 -0.4
723,950 + B158DRAFT_0723 0.35 +0.0

Or see this region's nucleotide sequence