Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0697

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0696 and B158DRAFT_0697 are separated by 2 nucleotidesB158DRAFT_0697 and B158DRAFT_0698 overlap by 4 nucleotidesB158DRAFT_0698 and B158DRAFT_0699 overlap by 4 nucleotides B158DRAFT_0696: B158DRAFT_0696 - Type II secretory pathway, component PulK, at 697,329 to 698,414 _0696 B158DRAFT_0697: B158DRAFT_0697 - Type II secretory pathway, component PulL, at 698,417 to 699,652 _0697 B158DRAFT_0698: B158DRAFT_0698 - Type II secretory pathway, component PulM, at 699,649 to 700,131 _0698 B158DRAFT_0699: B158DRAFT_0699 - type II secretion system protein N (GspN), at 700,128 to 700,874 _0699 Position (kb) 698 699 700Strain fitness (log2 ratio) -3 -2 -1 0 1at 697.428 kb on + strandat 697.428 kb on + strandat 697.436 kb on - strandat 697.504 kb on + strand, within B158DRAFT_0696at 697.533 kb on + strand, within B158DRAFT_0696at 697.806 kb on + strand, within B158DRAFT_0696at 697.844 kb on + strand, within B158DRAFT_0696at 697.850 kb on + strand, within B158DRAFT_0696at 697.891 kb on - strand, within B158DRAFT_0696at 697.930 kb on - strand, within B158DRAFT_0696at 697.973 kb on + strand, within B158DRAFT_0696at 697.981 kb on - strand, within B158DRAFT_0696at 698.039 kb on + strand, within B158DRAFT_0696at 698.052 kb on + strand, within B158DRAFT_0696at 698.060 kb on - strand, within B158DRAFT_0696at 698.179 kb on + strand, within B158DRAFT_0696at 698.337 kb on + strandat 698.349 kb on + strandat 698.483 kb on + strandat 698.605 kb on - strand, within B158DRAFT_0697at 698.615 kb on - strand, within B158DRAFT_0697at 698.675 kb on - strand, within B158DRAFT_0697at 698.707 kb on + strand, within B158DRAFT_0697at 698.827 kb on + strand, within B158DRAFT_0697at 698.878 kb on - strand, within B158DRAFT_0697at 699.136 kb on - strand, within B158DRAFT_0697at 699.351 kb on + strand, within B158DRAFT_0697at 699.559 kb on + strandat 699.647 kb on - strandat 699.854 kb on + strand, within B158DRAFT_0698at 699.890 kb on + strand, within B158DRAFT_0698at 700.039 kb on + strand, within B158DRAFT_0698at 700.048 kb on - strand, within B158DRAFT_0698at 700.069 kb on - strand, within B158DRAFT_0698at 700.217 kb on - strand, within B158DRAFT_0699at 700.224 kb on + strand, within B158DRAFT_0699at 700.224 kb on + strand, within B158DRAFT_0699at 700.239 kb on - strand, within B158DRAFT_0699at 700.246 kb on + strand, within B158DRAFT_0699at 700.327 kb on - strand, within B158DRAFT_0699at 700.479 kb on + strand, within B158DRAFT_0699at 700.484 kb on + strand, within B158DRAFT_0699at 700.487 kb on - strand, within B158DRAFT_0699at 700.487 kb on - strand, within B158DRAFT_0699at 700.487 kb on - strand, within B158DRAFT_0699at 700.487 kb on - strand, within B158DRAFT_0699at 700.489 kb on + strand, within B158DRAFT_0699at 700.596 kb on - strand, within B158DRAFT_0699at 700.600 kb on + strand, within B158DRAFT_0699at 700.600 kb on + strand, within B158DRAFT_0699at 700.613 kb on - strand, within B158DRAFT_0699at 700.649 kb on + strand, within B158DRAFT_0699

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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697,428 + +0.2
697,428 + -1.6
697,436 - -1.4
697,504 + B158DRAFT_0696 0.16 -2.2
697,533 + B158DRAFT_0696 0.19 -0.4
697,806 + B158DRAFT_0696 0.44 -0.1
697,844 + B158DRAFT_0696 0.47 -1.8
697,850 + B158DRAFT_0696 0.48 -2.6
697,891 - B158DRAFT_0696 0.52 -1.5
697,930 - B158DRAFT_0696 0.55 -1.8
697,973 + B158DRAFT_0696 0.59 +0.2
697,981 - B158DRAFT_0696 0.60 -1.5
698,039 + B158DRAFT_0696 0.65 -1.6
698,052 + B158DRAFT_0696 0.67 -0.4
698,060 - B158DRAFT_0696 0.67 +1.2
698,179 + B158DRAFT_0696 0.78 -2.2
698,337 + -2.8
698,349 + -0.7
698,483 + -3.7
698,605 - B158DRAFT_0697 0.15 -1.1
698,615 - B158DRAFT_0697 0.16 -1.0
698,675 - B158DRAFT_0697 0.21 -1.8
698,707 + B158DRAFT_0697 0.23 +0.9
698,827 + B158DRAFT_0697 0.33 -0.4
698,878 - B158DRAFT_0697 0.37 -2.4
699,136 - B158DRAFT_0697 0.58 -0.4
699,351 + B158DRAFT_0697 0.76 +0.2
699,559 + -1.5
699,647 - -1.1
699,854 + B158DRAFT_0698 0.42 -1.2
699,890 + B158DRAFT_0698 0.50 -1.9
700,039 + B158DRAFT_0698 0.81 -1.0
700,048 - B158DRAFT_0698 0.83 -3.0
700,069 - B158DRAFT_0698 0.87 -2.7
700,217 - B158DRAFT_0699 0.12 -0.1
700,224 + B158DRAFT_0699 0.13 -0.1
700,224 + B158DRAFT_0699 0.13 -0.5
700,239 - B158DRAFT_0699 0.15 +0.1
700,246 + B158DRAFT_0699 0.16 -0.0
700,327 - B158DRAFT_0699 0.27 +0.1
700,479 + B158DRAFT_0699 0.47 +0.0
700,484 + B158DRAFT_0699 0.48 +0.6
700,487 - B158DRAFT_0699 0.48 +0.7
700,487 - B158DRAFT_0699 0.48 -0.1
700,487 - B158DRAFT_0699 0.48 -0.1
700,487 - B158DRAFT_0699 0.48 -1.2
700,489 + B158DRAFT_0699 0.48 -0.4
700,596 - B158DRAFT_0699 0.63 +0.1
700,600 + B158DRAFT_0699 0.63 -0.2
700,600 + B158DRAFT_0699 0.63 +0.3
700,613 - B158DRAFT_0699 0.65 +0.4
700,649 + B158DRAFT_0699 0.70 +0.0

Or see this region's nucleotide sequence