Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0335 and B158DRAFT_0336 are separated by 249 nucleotides B158DRAFT_0336 and B158DRAFT_0337 are separated by 103 nucleotides B158DRAFT_0337 and B158DRAFT_0338 are separated by 191 nucleotides B158DRAFT_0338 and B158DRAFT_0339 are separated by 64 nucleotides
B158DRAFT_0335: B158DRAFT_0335 - Signal transduction histidine kinase, at 337,197 to 338,639
_0335
B158DRAFT_0336: B158DRAFT_0336 - hypothetical protein, at 338,889 to 339,176
_0336
B158DRAFT_0337: B158DRAFT_0337 - hypothetical protein, at 339,280 to 339,687
_0337
B158DRAFT_0338: B158DRAFT_0338 - hypothetical protein, at 339,879 to 340,409
_0338
B158DRAFT_0339: B158DRAFT_0339 - hypothetical protein, at 340,474 to 341,049
_0339
Position (kb) 339
340 Strain fitness (log2 ratio) -1
0
1 at 338.383 kb on + strand, within B158DRAFT_0335 at 338.408 kb on - strand, within B158DRAFT_0335 at 338.486 kb on - strand, within B158DRAFT_0335 at 338.514 kb on - strand at 338.571 kb on + strand at 338.676 kb on - strand at 338.689 kb on + strand at 338.720 kb on + strand at 338.749 kb on + strand at 338.757 kb on + strand at 338.860 kb on + strand at 338.894 kb on + strand at 338.920 kb on + strand, within B158DRAFT_0336 at 339.007 kb on + strand, within B158DRAFT_0336 at 339.209 kb on + strand at 339.226 kb on + strand at 339.329 kb on - strand, within B158DRAFT_0337 at 339.371 kb on + strand, within B158DRAFT_0337 at 339.379 kb on - strand, within B158DRAFT_0337 at 339.379 kb on - strand, within B158DRAFT_0337 at 339.403 kb on - strand, within B158DRAFT_0337 at 339.418 kb on + strand, within B158DRAFT_0337 at 339.619 kb on - strand, within B158DRAFT_0337 at 339.839 kb on + strand at 339.884 kb on - strand at 339.884 kb on - strand at 339.886 kb on + strand at 339.913 kb on - strand at 339.913 kb on - strand at 340.105 kb on - strand, within B158DRAFT_0338 at 340.136 kb on + strand, within B158DRAFT_0338 at 340.395 kb on - strand at 340.538 kb on - strand, within B158DRAFT_0339 at 340.557 kb on - strand, within B158DRAFT_0339 at 340.680 kb on + strand, within B158DRAFT_0339
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 338,383 + B158DRAFT_0335 0.82 +0.6 338,408 - B158DRAFT_0335 0.84 +0.1 338,486 - B158DRAFT_0335 0.89 +0.3 338,514 - +0.1 338,571 + -1.4 338,676 - -0.7 338,689 + +0.1 338,720 + +0.9 338,749 + -0.2 338,757 + +0.1 338,860 + +0.2 338,894 + +0.2 338,920 + B158DRAFT_0336 0.11 +0.6 339,007 + B158DRAFT_0336 0.41 +0.9 339,209 + +0.1 339,226 + -0.3 339,329 - B158DRAFT_0337 0.12 -1.7 339,371 + B158DRAFT_0337 0.22 +0.5 339,379 - B158DRAFT_0337 0.24 -0.1 339,379 - B158DRAFT_0337 0.24 -0.0 339,403 - B158DRAFT_0337 0.30 +0.2 339,418 + B158DRAFT_0337 0.34 -0.3 339,619 - B158DRAFT_0337 0.83 -0.2 339,839 + -0.7 339,884 - -0.4 339,884 - -0.7 339,886 + +0.0 339,913 - +0.1 339,913 - -0.0 340,105 - B158DRAFT_0338 0.43 -0.6 340,136 + B158DRAFT_0338 0.48 -0.2 340,395 - -0.2 340,538 - B158DRAFT_0339 0.11 +0.3 340,557 - B158DRAFT_0339 0.14 -0.3 340,680 + B158DRAFT_0339 0.36 +0.2
Or see this region's nucleotide sequence