Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0333

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0331 and B158DRAFT_0332 are separated by 97 nucleotidesB158DRAFT_0332 and B158DRAFT_0333 are separated by 190 nucleotidesB158DRAFT_0333 and B158DRAFT_0334 are separated by 103 nucleotidesB158DRAFT_0334 and B158DRAFT_0335 are separated by 19 nucleotides B158DRAFT_0331: B158DRAFT_0331 - hypothetical protein, at 333,674 to 334,300 _0331 B158DRAFT_0332: B158DRAFT_0332 - hypothetical protein, at 334,398 to 334,808 _0332 B158DRAFT_0333: B158DRAFT_0333 - Domain of unknown function (DUF1996)., at 334,999 to 336,411 _0333 B158DRAFT_0334: B158DRAFT_0334 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 336,515 to 337,177 _0334 B158DRAFT_0335: B158DRAFT_0335 - Signal transduction histidine kinase, at 337,197 to 338,639 _0335 Position (kb) 334 335 336 337Strain fitness (log2 ratio) -2 -1 0 1at 334.194 kb on + strand, within B158DRAFT_0331at 334.358 kb on + strandat 334.387 kb on - strandat 334.493 kb on + strand, within B158DRAFT_0332at 334.716 kb on + strand, within B158DRAFT_0332at 334.716 kb on + strand, within B158DRAFT_0332at 334.716 kb on + strand, within B158DRAFT_0332at 334.716 kb on + strand, within B158DRAFT_0332at 334.724 kb on - strand, within B158DRAFT_0332at 334.724 kb on - strand, within B158DRAFT_0332at 334.934 kb on - strandat 335.080 kb on - strandat 335.093 kb on + strandat 335.107 kb on + strandat 335.115 kb on - strandat 335.132 kb on + strandat 335.174 kb on + strand, within B158DRAFT_0333at 335.186 kb on + strand, within B158DRAFT_0333at 335.194 kb on - strand, within B158DRAFT_0333at 335.245 kb on + strand, within B158DRAFT_0333at 335.245 kb on - strand, within B158DRAFT_0333at 335.258 kb on + strand, within B158DRAFT_0333at 335.266 kb on - strand, within B158DRAFT_0333at 335.266 kb on - strand, within B158DRAFT_0333at 335.391 kb on + strand, within B158DRAFT_0333at 335.414 kb on - strand, within B158DRAFT_0333at 335.474 kb on + strand, within B158DRAFT_0333at 335.488 kb on + strand, within B158DRAFT_0333at 335.506 kb on - strand, within B158DRAFT_0333at 335.529 kb on - strand, within B158DRAFT_0333at 335.546 kb on + strand, within B158DRAFT_0333at 335.546 kb on + strand, within B158DRAFT_0333at 335.546 kb on + strand, within B158DRAFT_0333at 335.551 kb on + strand, within B158DRAFT_0333at 335.551 kb on + strand, within B158DRAFT_0333at 335.551 kb on + strand, within B158DRAFT_0333at 335.551 kb on + strand, within B158DRAFT_0333at 335.551 kb on + strand, within B158DRAFT_0333at 335.551 kb on + strand, within B158DRAFT_0333at 335.551 kb on + strand, within B158DRAFT_0333at 335.554 kb on - strand, within B158DRAFT_0333at 335.559 kb on - strand, within B158DRAFT_0333at 335.559 kb on - strand, within B158DRAFT_0333at 335.559 kb on - strand, within B158DRAFT_0333at 335.559 kb on - strand, within B158DRAFT_0333at 335.559 kb on - strand, within B158DRAFT_0333at 335.559 kb on - strand, within B158DRAFT_0333at 335.559 kb on - strand, within B158DRAFT_0333at 335.559 kb on - strand, within B158DRAFT_0333at 335.559 kb on - strand, within B158DRAFT_0333at 335.559 kb on - strand, within B158DRAFT_0333at 335.559 kb on - strand, within B158DRAFT_0333at 335.559 kb on - strand, within B158DRAFT_0333at 335.559 kb on - strand, within B158DRAFT_0333at 335.559 kb on - strand, within B158DRAFT_0333at 335.577 kb on + strand, within B158DRAFT_0333at 335.604 kb on - strand, within B158DRAFT_0333at 335.643 kb on + strand, within B158DRAFT_0333at 335.752 kb on - strand, within B158DRAFT_0333at 335.799 kb on + strand, within B158DRAFT_0333at 335.799 kb on + strand, within B158DRAFT_0333at 335.837 kb on + strand, within B158DRAFT_0333at 335.866 kb on + strand, within B158DRAFT_0333at 335.893 kb on + strand, within B158DRAFT_0333at 335.955 kb on - strand, within B158DRAFT_0333at 336.000 kb on + strand, within B158DRAFT_0333at 336.000 kb on + strand, within B158DRAFT_0333at 336.008 kb on - strand, within B158DRAFT_0333at 336.098 kb on + strand, within B158DRAFT_0333at 336.180 kb on - strand, within B158DRAFT_0333at 336.182 kb on + strand, within B158DRAFT_0333at 336.190 kb on - strand, within B158DRAFT_0333at 336.190 kb on - strand, within B158DRAFT_0333at 336.190 kb on - strand, within B158DRAFT_0333at 336.190 kb on - strand, within B158DRAFT_0333at 336.190 kb on - strand, within B158DRAFT_0333at 336.190 kb on - strand, within B158DRAFT_0333at 336.208 kb on + strand, within B158DRAFT_0333at 336.228 kb on - strand, within B158DRAFT_0333at 336.323 kb on - strandat 336.368 kb on + strandat 336.376 kb on - strandat 336.418 kb on + strandat 336.450 kb on - strandat 336.458 kb on - strandat 336.458 kb on - strandat 336.458 kb on - strandat 336.502 kb on + strandat 336.567 kb on + strandat 336.611 kb on + strand, within B158DRAFT_0334at 336.715 kb on + strand, within B158DRAFT_0334at 336.794 kb on + strand, within B158DRAFT_0334at 336.794 kb on + strand, within B158DRAFT_0334at 336.794 kb on + strand, within B158DRAFT_0334at 336.794 kb on + strand, within B158DRAFT_0334at 336.802 kb on - strand, within B158DRAFT_0334at 336.802 kb on - strand, within B158DRAFT_0334at 336.824 kb on + strand, within B158DRAFT_0334at 336.824 kb on + strand, within B158DRAFT_0334at 336.824 kb on + strand, within B158DRAFT_0334at 336.832 kb on - strand, within B158DRAFT_0334at 336.871 kb on - strand, within B158DRAFT_0334at 336.943 kb on + strand, within B158DRAFT_0334at 336.988 kb on + strand, within B158DRAFT_0334at 337.012 kb on + strand, within B158DRAFT_0334at 337.087 kb on - strand, within B158DRAFT_0334at 337.124 kb on + strandat 337.179 kb on + strandat 337.189 kb on + strandat 337.192 kb on - strandat 337.197 kb on - strandat 337.237 kb on - strandat 337.279 kb on - strandat 337.351 kb on + strand, within B158DRAFT_0335

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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334,194 + B158DRAFT_0331 0.83 -0.2
334,358 + -0.1
334,387 - -0.2
334,493 + B158DRAFT_0332 0.23 -0.1
334,716 + B158DRAFT_0332 0.77 -0.5
334,716 + B158DRAFT_0332 0.77 +0.0
334,716 + B158DRAFT_0332 0.77 -0.4
334,716 + B158DRAFT_0332 0.77 -0.2
334,724 - B158DRAFT_0332 0.79 +0.1
334,724 - B158DRAFT_0332 0.79 -0.5
334,934 - -0.3
335,080 - -0.6
335,093 + +0.0
335,107 + -0.3
335,115 - -0.4
335,132 + -0.2
335,174 + B158DRAFT_0333 0.12 -0.3
335,186 + B158DRAFT_0333 0.13 +0.9
335,194 - B158DRAFT_0333 0.14 +0.1
335,245 + B158DRAFT_0333 0.17 +0.8
335,245 - B158DRAFT_0333 0.17 -0.3
335,258 + B158DRAFT_0333 0.18 -0.5
335,266 - B158DRAFT_0333 0.19 +0.3
335,266 - B158DRAFT_0333 0.19 -0.2
335,391 + B158DRAFT_0333 0.28 -0.7
335,414 - B158DRAFT_0333 0.29 -0.3
335,474 + B158DRAFT_0333 0.34 +0.6
335,488 + B158DRAFT_0333 0.35 -0.1
335,506 - B158DRAFT_0333 0.36 -0.0
335,529 - B158DRAFT_0333 0.38 -0.3
335,546 + B158DRAFT_0333 0.39 -0.2
335,546 + B158DRAFT_0333 0.39 -0.3
335,546 + B158DRAFT_0333 0.39 -0.1
335,551 + B158DRAFT_0333 0.39 -0.2
335,551 + B158DRAFT_0333 0.39 -1.0
335,551 + B158DRAFT_0333 0.39 +0.3
335,551 + B158DRAFT_0333 0.39 +0.2
335,551 + B158DRAFT_0333 0.39 +0.3
335,551 + B158DRAFT_0333 0.39 -0.3
335,551 + B158DRAFT_0333 0.39 +0.1
335,554 - B158DRAFT_0333 0.39 -0.3
335,559 - B158DRAFT_0333 0.40 -0.4
335,559 - B158DRAFT_0333 0.40 -0.2
335,559 - B158DRAFT_0333 0.40 -0.4
335,559 - B158DRAFT_0333 0.40 -0.7
335,559 - B158DRAFT_0333 0.40 -0.0
335,559 - B158DRAFT_0333 0.40 +0.0
335,559 - B158DRAFT_0333 0.40 +0.8
335,559 - B158DRAFT_0333 0.40 -0.3
335,559 - B158DRAFT_0333 0.40 -0.3
335,559 - B158DRAFT_0333 0.40 +0.0
335,559 - B158DRAFT_0333 0.40 -0.1
335,559 - B158DRAFT_0333 0.40 +0.5
335,559 - B158DRAFT_0333 0.40 -0.2
335,559 - B158DRAFT_0333 0.40 +0.2
335,577 + B158DRAFT_0333 0.41 +0.0
335,604 - B158DRAFT_0333 0.43 +0.2
335,643 + B158DRAFT_0333 0.46 +0.0
335,752 - B158DRAFT_0333 0.53 -0.8
335,799 + B158DRAFT_0333 0.57 -0.1
335,799 + B158DRAFT_0333 0.57 -0.5
335,837 + B158DRAFT_0333 0.59 -0.2
335,866 + B158DRAFT_0333 0.61 -0.3
335,893 + B158DRAFT_0333 0.63 +0.1
335,955 - B158DRAFT_0333 0.68 -0.6
336,000 + B158DRAFT_0333 0.71 +0.2
336,000 + B158DRAFT_0333 0.71 -0.5
336,008 - B158DRAFT_0333 0.71 +0.2
336,098 + B158DRAFT_0333 0.78 -2.1
336,180 - B158DRAFT_0333 0.84 -0.1
336,182 + B158DRAFT_0333 0.84 -0.2
336,190 - B158DRAFT_0333 0.84 +0.1
336,190 - B158DRAFT_0333 0.84 -0.4
336,190 - B158DRAFT_0333 0.84 +0.2
336,190 - B158DRAFT_0333 0.84 +0.4
336,190 - B158DRAFT_0333 0.84 -0.1
336,190 - B158DRAFT_0333 0.84 -0.4
336,208 + B158DRAFT_0333 0.86 -1.6
336,228 - B158DRAFT_0333 0.87 -0.4
336,323 - -0.3
336,368 + -0.7
336,376 - -0.3
336,418 + -0.2
336,450 - -1.0
336,458 - +0.1
336,458 - -0.1
336,458 - +1.3
336,502 + +0.5
336,567 + +0.6
336,611 + B158DRAFT_0334 0.14 -0.2
336,715 + B158DRAFT_0334 0.30 +1.0
336,794 + B158DRAFT_0334 0.42 +0.3
336,794 + B158DRAFT_0334 0.42 -0.3
336,794 + B158DRAFT_0334 0.42 -0.2
336,794 + B158DRAFT_0334 0.42 +0.1
336,802 - B158DRAFT_0334 0.43 -0.3
336,802 - B158DRAFT_0334 0.43 -0.2
336,824 + B158DRAFT_0334 0.47 -0.7
336,824 + B158DRAFT_0334 0.47 -0.4
336,824 + B158DRAFT_0334 0.47 -0.2
336,832 - B158DRAFT_0334 0.48 +0.7
336,871 - B158DRAFT_0334 0.54 -0.9
336,943 + B158DRAFT_0334 0.65 +0.0
336,988 + B158DRAFT_0334 0.71 -0.4
337,012 + B158DRAFT_0334 0.75 -0.8
337,087 - B158DRAFT_0334 0.86 -0.1
337,124 + -0.5
337,179 + -0.4
337,189 + +0.8
337,192 - -0.2
337,197 - +0.3
337,237 - -0.5
337,279 - -0.1
337,351 + B158DRAFT_0335 0.11 +0.1

Or see this region's nucleotide sequence