Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2217

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2215 and B158DRAFT_2216 are separated by 166 nucleotidesB158DRAFT_2216 and B158DRAFT_2217 overlap by 11 nucleotidesB158DRAFT_2217 and B158DRAFT_2218 are separated by 60 nucleotides B158DRAFT_2215: B158DRAFT_2215 - Na+/H+-dicarboxylate symporters, at 362,636 to 363,946 _2215 B158DRAFT_2216: B158DRAFT_2216 - Predicted transcriptional regulator, at 364,113 to 364,490 _2216 B158DRAFT_2217: B158DRAFT_2217 - TonB family C-terminal domain, at 364,480 to 366,510 _2217 B158DRAFT_2218: B158DRAFT_2218 - succinylarginine dihydrolase (EC 3.5.3.23), at 366,571 to 367,941 _2218 Position (kb) 364 365 366 367Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 363.496 kb on + strand, within B158DRAFT_2215at 363.496 kb on + strand, within B158DRAFT_2215at 363.568 kb on + strand, within B158DRAFT_2215at 363.576 kb on - strand, within B158DRAFT_2215at 363.637 kb on + strand, within B158DRAFT_2215at 363.844 kb on - strandat 363.883 kb on + strandat 363.948 kb on + strandat 363.948 kb on + strandat 364.117 kb on + strandat 364.127 kb on + strandat 364.135 kb on - strandat 364.181 kb on - strand, within B158DRAFT_2216at 364.181 kb on - strand, within B158DRAFT_2216at 364.183 kb on + strand, within B158DRAFT_2216at 364.183 kb on + strand, within B158DRAFT_2216at 364.183 kb on + strand, within B158DRAFT_2216at 364.183 kb on + strand, within B158DRAFT_2216at 364.186 kb on - strand, within B158DRAFT_2216at 364.191 kb on - strand, within B158DRAFT_2216at 364.210 kb on - strand, within B158DRAFT_2216at 364.214 kb on + strand, within B158DRAFT_2216at 364.227 kb on - strand, within B158DRAFT_2216at 364.268 kb on + strand, within B158DRAFT_2216at 364.331 kb on + strand, within B158DRAFT_2216at 364.339 kb on - strand, within B158DRAFT_2216at 364.472 kb on + strandat 364.547 kb on + strandat 364.640 kb on + strandat 364.640 kb on + strandat 364.640 kb on + strandat 364.648 kb on - strandat 364.648 kb on - strandat 364.725 kb on + strand, within B158DRAFT_2217at 364.727 kb on - strand, within B158DRAFT_2217at 364.735 kb on + strand, within B158DRAFT_2217at 364.742 kb on - strand, within B158DRAFT_2217at 364.784 kb on + strand, within B158DRAFT_2217at 364.932 kb on + strand, within B158DRAFT_2217at 364.945 kb on + strand, within B158DRAFT_2217at 364.945 kb on + strand, within B158DRAFT_2217at 364.953 kb on - strand, within B158DRAFT_2217at 364.953 kb on - strand, within B158DRAFT_2217at 365.038 kb on + strand, within B158DRAFT_2217at 365.066 kb on + strand, within B158DRAFT_2217at 365.086 kb on + strand, within B158DRAFT_2217at 365.086 kb on + strand, within B158DRAFT_2217at 365.086 kb on + strand, within B158DRAFT_2217at 365.086 kb on + strand, within B158DRAFT_2217at 365.101 kb on + strand, within B158DRAFT_2217at 365.217 kb on - strand, within B158DRAFT_2217at 365.226 kb on + strand, within B158DRAFT_2217at 365.376 kb on - strand, within B158DRAFT_2217at 365.534 kb on + strand, within B158DRAFT_2217at 365.543 kb on - strand, within B158DRAFT_2217at 365.595 kb on + strand, within B158DRAFT_2217at 365.605 kb on + strand, within B158DRAFT_2217at 365.685 kb on - strand, within B158DRAFT_2217at 365.685 kb on - strand, within B158DRAFT_2217at 365.814 kb on + strand, within B158DRAFT_2217at 365.814 kb on + strand, within B158DRAFT_2217at 365.892 kb on - strand, within B158DRAFT_2217at 365.994 kb on - strand, within B158DRAFT_2217at 366.032 kb on - strand, within B158DRAFT_2217at 366.035 kb on + strand, within B158DRAFT_2217at 366.040 kb on + strand, within B158DRAFT_2217at 366.199 kb on - strand, within B158DRAFT_2217at 366.227 kb on + strand, within B158DRAFT_2217at 366.248 kb on - strand, within B158DRAFT_2217at 366.294 kb on + strand, within B158DRAFT_2217at 366.329 kb on + strandat 366.372 kb on - strandat 366.372 kb on - strandat 366.459 kb on + strandat 366.459 kb on + strandat 366.654 kb on + strandat 366.769 kb on + strand, within B158DRAFT_2218at 366.869 kb on + strand, within B158DRAFT_2218at 366.869 kb on + strand, within B158DRAFT_2218at 366.874 kb on + strand, within B158DRAFT_2218at 366.895 kb on - strand, within B158DRAFT_2218at 366.923 kb on - strand, within B158DRAFT_2218at 366.990 kb on + strand, within B158DRAFT_2218at 366.998 kb on - strand, within B158DRAFT_2218at 367.003 kb on - strand, within B158DRAFT_2218at 367.077 kb on + strand, within B158DRAFT_2218at 367.077 kb on + strand, within B158DRAFT_2218at 367.082 kb on + strand, within B158DRAFT_2218at 367.082 kb on + strand, within B158DRAFT_2218at 367.082 kb on + strand, within B158DRAFT_2218at 367.082 kb on + strand, within B158DRAFT_2218at 367.082 kb on + strand, within B158DRAFT_2218at 367.090 kb on - strand, within B158DRAFT_2218at 367.090 kb on - strand, within B158DRAFT_2218at 367.090 kb on - strand, within B158DRAFT_2218at 367.090 kb on - strand, within B158DRAFT_2218at 367.090 kb on - strand, within B158DRAFT_2218at 367.090 kb on - strand, within B158DRAFT_2218at 367.090 kb on - strand, within B158DRAFT_2218at 367.090 kb on - strand, within B158DRAFT_2218at 367.090 kb on - strand, within B158DRAFT_2218at 367.185 kb on + strand, within B158DRAFT_2218at 367.212 kb on + strand, within B158DRAFT_2218at 367.212 kb on + strand, within B158DRAFT_2218at 367.212 kb on + strand, within B158DRAFT_2218at 367.230 kb on - strand, within B158DRAFT_2218at 367.290 kb on + strand, within B158DRAFT_2218at 367.303 kb on - strand, within B158DRAFT_2218at 367.424 kb on + strand, within B158DRAFT_2218at 367.429 kb on + strand, within B158DRAFT_2218at 367.429 kb on + strand, within B158DRAFT_2218at 367.429 kb on + strand, within B158DRAFT_2218at 367.432 kb on - strand, within B158DRAFT_2218at 367.437 kb on - strand, within B158DRAFT_2218at 367.437 kb on - strand, within B158DRAFT_2218at 367.437 kb on - strand, within B158DRAFT_2218at 367.437 kb on - strand, within B158DRAFT_2218at 367.437 kb on - strand, within B158DRAFT_2218at 367.437 kb on - strand, within B158DRAFT_2218at 367.437 kb on - strand, within B158DRAFT_2218at 367.441 kb on + strand, within B158DRAFT_2218at 367.446 kb on + strand, within B158DRAFT_2218

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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363,496 + B158DRAFT_2215 0.66 -1.6
363,496 + B158DRAFT_2215 0.66 -1.0
363,568 + B158DRAFT_2215 0.71 -1.6
363,576 - B158DRAFT_2215 0.72 -2.0
363,637 + B158DRAFT_2215 0.76 -2.7
363,844 - -1.4
363,883 + -1.3
363,948 + -1.1
363,948 + -2.0
364,117 + -0.1
364,127 + +0.3
364,135 - -0.8
364,181 - B158DRAFT_2216 0.18 +0.3
364,181 - B158DRAFT_2216 0.18 +0.6
364,183 + B158DRAFT_2216 0.19 +0.7
364,183 + B158DRAFT_2216 0.19 +0.1
364,183 + B158DRAFT_2216 0.19 +0.1
364,183 + B158DRAFT_2216 0.19 -0.1
364,186 - B158DRAFT_2216 0.19 +0.1
364,191 - B158DRAFT_2216 0.21 +0.4
364,210 - B158DRAFT_2216 0.26 +0.6
364,214 + B158DRAFT_2216 0.27 +0.5
364,227 - B158DRAFT_2216 0.30 +0.2
364,268 + B158DRAFT_2216 0.41 -0.4
364,331 + B158DRAFT_2216 0.58 +0.2
364,339 - B158DRAFT_2216 0.60 +0.4
364,472 + +0.3
364,547 + -0.3
364,640 + -0.5
364,640 + +0.8
364,640 + +0.1
364,648 - +0.3
364,648 - -0.4
364,725 + B158DRAFT_2217 0.12 -1.2
364,727 - B158DRAFT_2217 0.12 +0.5
364,735 + B158DRAFT_2217 0.13 -0.3
364,742 - B158DRAFT_2217 0.13 +0.4
364,784 + B158DRAFT_2217 0.15 -0.7
364,932 + B158DRAFT_2217 0.22 -0.2
364,945 + B158DRAFT_2217 0.23 +0.5
364,945 + B158DRAFT_2217 0.23 +0.6
364,953 - B158DRAFT_2217 0.23 -0.5
364,953 - B158DRAFT_2217 0.23 -0.6
365,038 + B158DRAFT_2217 0.27 +0.4
365,066 + B158DRAFT_2217 0.29 -0.1
365,086 + B158DRAFT_2217 0.30 -0.2
365,086 + B158DRAFT_2217 0.30 +0.4
365,086 + B158DRAFT_2217 0.30 -0.1
365,086 + B158DRAFT_2217 0.30 +0.0
365,101 + B158DRAFT_2217 0.31 -0.4
365,217 - B158DRAFT_2217 0.36 +0.1
365,226 + B158DRAFT_2217 0.37 +0.2
365,376 - B158DRAFT_2217 0.44 +0.5
365,534 + B158DRAFT_2217 0.52 -0.7
365,543 - B158DRAFT_2217 0.52 +0.1
365,595 + B158DRAFT_2217 0.55 +0.2
365,605 + B158DRAFT_2217 0.55 -0.0
365,685 - B158DRAFT_2217 0.59 +0.2
365,685 - B158DRAFT_2217 0.59 -0.0
365,814 + B158DRAFT_2217 0.66 +0.4
365,814 + B158DRAFT_2217 0.66 +0.2
365,892 - B158DRAFT_2217 0.70 -0.4
365,994 - B158DRAFT_2217 0.75 +0.5
366,032 - B158DRAFT_2217 0.76 +0.2
366,035 + B158DRAFT_2217 0.77 -0.0
366,040 + B158DRAFT_2217 0.77 +0.5
366,199 - B158DRAFT_2217 0.85 +0.2
366,227 + B158DRAFT_2217 0.86 +0.1
366,248 - B158DRAFT_2217 0.87 +0.2
366,294 + B158DRAFT_2217 0.89 -0.3
366,329 + +1.2
366,372 - +0.4
366,372 - -0.8
366,459 + -0.5
366,459 + -0.7
366,654 + -2.2
366,769 + B158DRAFT_2218 0.14 -2.2
366,869 + B158DRAFT_2218 0.22 -2.8
366,869 + B158DRAFT_2218 0.22 -2.8
366,874 + B158DRAFT_2218 0.22 -0.4
366,895 - B158DRAFT_2218 0.24 -1.8
366,923 - B158DRAFT_2218 0.26 -1.7
366,990 + B158DRAFT_2218 0.31 -2.2
366,998 - B158DRAFT_2218 0.31 -1.3
367,003 - B158DRAFT_2218 0.32 -1.0
367,077 + B158DRAFT_2218 0.37 -0.4
367,077 + B158DRAFT_2218 0.37 -2.6
367,082 + B158DRAFT_2218 0.37 -1.3
367,082 + B158DRAFT_2218 0.37 -1.1
367,082 + B158DRAFT_2218 0.37 -1.0
367,082 + B158DRAFT_2218 0.37 -2.1
367,082 + B158DRAFT_2218 0.37 -1.8
367,090 - B158DRAFT_2218 0.38 -1.4
367,090 - B158DRAFT_2218 0.38 -1.2
367,090 - B158DRAFT_2218 0.38 -4.1
367,090 - B158DRAFT_2218 0.38 -3.2
367,090 - B158DRAFT_2218 0.38 -1.9
367,090 - B158DRAFT_2218 0.38 -3.8
367,090 - B158DRAFT_2218 0.38 -2.8
367,090 - B158DRAFT_2218 0.38 -0.2
367,090 - B158DRAFT_2218 0.38 -1.7
367,185 + B158DRAFT_2218 0.45 +0.8
367,212 + B158DRAFT_2218 0.47 -2.4
367,212 + B158DRAFT_2218 0.47 -2.8
367,212 + B158DRAFT_2218 0.47 -3.8
367,230 - B158DRAFT_2218 0.48 -2.4
367,290 + B158DRAFT_2218 0.52 -2.5
367,303 - B158DRAFT_2218 0.53 -2.0
367,424 + B158DRAFT_2218 0.62 -1.1
367,429 + B158DRAFT_2218 0.63 -1.8
367,429 + B158DRAFT_2218 0.63 -2.5
367,429 + B158DRAFT_2218 0.63 -3.5
367,432 - B158DRAFT_2218 0.63 -2.9
367,437 - B158DRAFT_2218 0.63 -2.6
367,437 - B158DRAFT_2218 0.63 -1.4
367,437 - B158DRAFT_2218 0.63 -0.4
367,437 - B158DRAFT_2218 0.63 -1.0
367,437 - B158DRAFT_2218 0.63 -1.4
367,437 - B158DRAFT_2218 0.63 -2.7
367,437 - B158DRAFT_2218 0.63 -2.8
367,441 + B158DRAFT_2218 0.63 -2.8
367,446 + B158DRAFT_2218 0.64 -2.1

Or see this region's nucleotide sequence