Experiment: m.b. D-Cycloserine 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2180 and B158DRAFT_2181 are separated by 339 nucleotides B158DRAFT_2181 and B158DRAFT_2182 are separated by 149 nucleotides B158DRAFT_2182 and B158DRAFT_2183 are separated by 154 nucleotides
B158DRAFT_2180: B158DRAFT_2180 - RNA polymerase, sigma-24 subunit, RpoE, at 327,431 to 328,021
_2180
B158DRAFT_2181: B158DRAFT_2181 - Negative regulator of sigma E activity, at 328,361 to 329,041
_2181
B158DRAFT_2182: B158DRAFT_2182 - positive regulator of sigma(E), RseC/MucC, at 329,191 to 329,682
_2182
B158DRAFT_2183: B158DRAFT_2183 - periplasmic serine protease, Do/DeqQ family, at 329,837 to 331,138
_2183
Position (kb) 328
329
330 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 327.361 kb on - strand at 327.361 kb on - strand at 327.361 kb on - strand at 327.361 kb on - strand at 327.361 kb on - strand at 327.361 kb on - strand at 327.413 kb on - strand at 327.433 kb on + strand at 327.433 kb on - strand at 327.439 kb on + strand at 327.443 kb on + strand at 327.443 kb on + strand at 327.443 kb on + strand at 327.443 kb on + strand at 327.451 kb on - strand at 327.468 kb on - strand at 327.535 kb on - strand, within B158DRAFT_2180 at 327.553 kb on - strand, within B158DRAFT_2180 at 327.569 kb on - strand, within B158DRAFT_2180 at 327.595 kb on + strand, within B158DRAFT_2180 at 327.603 kb on - strand, within B158DRAFT_2180 at 327.665 kb on + strand, within B158DRAFT_2180 at 327.702 kb on + strand, within B158DRAFT_2180 at 327.708 kb on + strand, within B158DRAFT_2180 at 327.856 kb on + strand, within B158DRAFT_2180 at 327.917 kb on + strand, within B158DRAFT_2180 at 327.917 kb on + strand, within B158DRAFT_2180 at 327.917 kb on + strand, within B158DRAFT_2180 at 327.917 kb on + strand, within B158DRAFT_2180 at 327.925 kb on - strand, within B158DRAFT_2180 at 327.935 kb on + strand, within B158DRAFT_2180 at 327.935 kb on + strand, within B158DRAFT_2180 at 328.006 kb on + strand at 328.006 kb on + strand at 328.006 kb on + strand at 328.006 kb on + strand at 328.006 kb on + strand at 328.014 kb on - strand at 328.014 kb on - strand at 328.084 kb on + strand at 328.593 kb on + strand, within B158DRAFT_2181 at 328.629 kb on + strand, within B158DRAFT_2181 at 328.637 kb on - strand, within B158DRAFT_2181 at 328.637 kb on - strand, within B158DRAFT_2181 at 328.644 kb on + strand, within B158DRAFT_2181 at 328.644 kb on + strand, within B158DRAFT_2181 at 328.765 kb on + strand, within B158DRAFT_2181 at 328.947 kb on - strand, within B158DRAFT_2181 at 328.981 kb on + strand at 329.083 kb on + strand at 329.201 kb on + strand at 329.561 kb on + strand, within B158DRAFT_2182 at 329.596 kb on + strand, within B158DRAFT_2182 at 329.671 kb on + strand at 329.691 kb on - strand at 329.839 kb on - strand at 329.864 kb on + strand at 329.967 kb on - strand at 329.980 kb on + strand, within B158DRAFT_2183 at 329.988 kb on - strand, within B158DRAFT_2183 at 329.988 kb on - strand, within B158DRAFT_2183 at 329.988 kb on - strand, within B158DRAFT_2183 at 330.011 kb on - strand, within B158DRAFT_2183 at 330.016 kb on + strand, within B158DRAFT_2183 at 330.031 kb on - strand, within B158DRAFT_2183 at 330.031 kb on - strand, within B158DRAFT_2183 at 330.032 kb on - strand, within B158DRAFT_2183
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml remove 327,361 - +0.2 327,361 - -0.2 327,361 - +0.0 327,361 - +0.3 327,361 - +0.2 327,361 - -0.0 327,413 - +0.2 327,433 + -0.2 327,433 - +0.1 327,439 + +0.2 327,443 + -0.2 327,443 + -0.7 327,443 + +0.4 327,443 + -0.0 327,451 - +0.3 327,468 - +0.2 327,535 - B158DRAFT_2180 0.18 -0.3 327,553 - B158DRAFT_2180 0.21 -0.2 327,569 - B158DRAFT_2180 0.23 -0.1 327,595 + B158DRAFT_2180 0.28 -0.3 327,603 - B158DRAFT_2180 0.29 +0.1 327,665 + B158DRAFT_2180 0.40 -0.3 327,702 + B158DRAFT_2180 0.46 -0.2 327,708 + B158DRAFT_2180 0.47 +0.2 327,856 + B158DRAFT_2180 0.72 +0.4 327,917 + B158DRAFT_2180 0.82 +0.9 327,917 + B158DRAFT_2180 0.82 +0.1 327,917 + B158DRAFT_2180 0.82 +0.2 327,917 + B158DRAFT_2180 0.82 +0.2 327,925 - B158DRAFT_2180 0.84 -0.4 327,935 + B158DRAFT_2180 0.85 +0.3 327,935 + B158DRAFT_2180 0.85 +1.1 328,006 + -0.2 328,006 + +0.4 328,006 + +0.2 328,006 + -0.4 328,006 + +0.0 328,014 - +0.5 328,014 - +0.5 328,084 + -4.9 328,593 + B158DRAFT_2181 0.34 -2.5 328,629 + B158DRAFT_2181 0.39 +0.2 328,637 - B158DRAFT_2181 0.41 -0.2 328,637 - B158DRAFT_2181 0.41 -1.4 328,644 + B158DRAFT_2181 0.42 +0.6 328,644 + B158DRAFT_2181 0.42 +0.4 328,765 + B158DRAFT_2181 0.59 -2.3 328,947 - B158DRAFT_2181 0.86 +0.3 328,981 + -0.3 329,083 + -0.1 329,201 + +0.1 329,561 + B158DRAFT_2182 0.75 -2.6 329,596 + B158DRAFT_2182 0.82 -0.6 329,671 + -0.1 329,691 - -0.0 329,839 - -0.7 329,864 + +0.3 329,967 - -0.8 329,980 + B158DRAFT_2183 0.11 -0.2 329,988 - B158DRAFT_2183 0.12 +1.0 329,988 - B158DRAFT_2183 0.12 -0.3 329,988 - B158DRAFT_2183 0.12 -0.0 330,011 - B158DRAFT_2183 0.13 -0.9 330,016 + B158DRAFT_2183 0.14 -0.4 330,031 - B158DRAFT_2183 0.15 +0.2 330,031 - B158DRAFT_2183 0.15 -2.1 330,032 - B158DRAFT_2183 0.15 +0.4
Or see this region's nucleotide sequence