Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2063

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2062 and B158DRAFT_2063 are separated by 70 nucleotidesB158DRAFT_2063 and B158DRAFT_2064 are separated by 5 nucleotides B158DRAFT_2062: B158DRAFT_2062 - glutamyl-tRNA reductase (EC 1.2.1.70), at 197,267 to 198,523 _2062 B158DRAFT_2063: B158DRAFT_2063 - peptide chain release factor 1, at 198,594 to 199,688 _2063 B158DRAFT_2064: B158DRAFT_2064 - [protein release factor]-glutamine N5-methyltransferase (EC 2.1.1.-), at 199,694 to 200,527 _2064 Position (kb) 198 199 200Strain fitness (log2 ratio) -3 -2 -1 0 1at 198.539 kb on + strandat 198.545 kb on + strandat 198.547 kb on + strandat 198.560 kb on + strandat 199.717 kb on + strandat 199.717 kb on + strandat 199.717 kb on + strandat 199.718 kb on + strandat 199.725 kb on - strandat 199.725 kb on - strandat 199.726 kb on - strandat 199.726 kb on - strandat 199.726 kb on - strandat 199.749 kb on + strandat 199.761 kb on - strandat 199.812 kb on - strand, within B158DRAFT_2064at 199.816 kb on + strand, within B158DRAFT_2064at 199.832 kb on + strand, within B158DRAFT_2064at 199.835 kb on - strand, within B158DRAFT_2064at 199.899 kb on + strand, within B158DRAFT_2064at 199.965 kb on + strand, within B158DRAFT_2064at 199.973 kb on - strand, within B158DRAFT_2064at 200.075 kb on + strand, within B158DRAFT_2064at 200.083 kb on - strand, within B158DRAFT_2064at 200.092 kb on + strand, within B158DRAFT_2064at 200.092 kb on + strand, within B158DRAFT_2064at 200.100 kb on - strand, within B158DRAFT_2064at 200.103 kb on + strand, within B158DRAFT_2064at 200.110 kb on + strand, within B158DRAFT_2064at 200.110 kb on + strand, within B158DRAFT_2064at 200.110 kb on + strand, within B158DRAFT_2064at 200.118 kb on - strand, within B158DRAFT_2064at 200.118 kb on - strand, within B158DRAFT_2064at 200.118 kb on - strand, within B158DRAFT_2064at 200.118 kb on - strand, within B158DRAFT_2064at 200.118 kb on - strand, within B158DRAFT_2064at 200.122 kb on + strand, within B158DRAFT_2064at 200.130 kb on - strand, within B158DRAFT_2064at 200.155 kb on + strand, within B158DRAFT_2064at 200.155 kb on + strand, within B158DRAFT_2064at 200.195 kb on + strand, within B158DRAFT_2064at 200.195 kb on + strand, within B158DRAFT_2064at 200.217 kb on + strand, within B158DRAFT_2064at 200.244 kb on - strand, within B158DRAFT_2064at 200.256 kb on - strand, within B158DRAFT_2064at 200.299 kb on - strand, within B158DRAFT_2064at 200.329 kb on + strand, within B158DRAFT_2064at 200.337 kb on - strand, within B158DRAFT_2064at 200.415 kb on + strand, within B158DRAFT_2064at 200.415 kb on + strand, within B158DRAFT_2064at 200.415 kb on + strand, within B158DRAFT_2064at 200.420 kb on + strand, within B158DRAFT_2064at 200.423 kb on - strand, within B158DRAFT_2064at 200.423 kb on - strand, within B158DRAFT_2064at 200.423 kb on - strand, within B158DRAFT_2064at 200.423 kb on - strand, within B158DRAFT_2064at 200.423 kb on - strand, within B158DRAFT_2064at 200.425 kb on + strand, within B158DRAFT_2064at 200.460 kb on + strandat 200.460 kb on + strandat 200.478 kb on - strandat 200.478 kb on - strandat 200.485 kb on + strandat 200.495 kb on + strandat 200.495 kb on + strandat 200.495 kb on + strandat 200.495 kb on + strandat 200.503 kb on - strandat 200.503 kb on - strandat 200.503 kb on - strandat 200.540 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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198,539 + -2.1
198,545 + -0.5
198,547 + +0.5
198,560 + +0.5
199,717 + -2.2
199,717 + -1.1
199,717 + -2.0
199,718 + -0.8
199,725 - -1.7
199,725 - -2.7
199,726 - -1.4
199,726 - -1.5
199,726 - -1.5
199,749 + -2.0
199,761 - -1.1
199,812 - B158DRAFT_2064 0.14 -2.0
199,816 + B158DRAFT_2064 0.15 -3.7
199,832 + B158DRAFT_2064 0.17 -2.7
199,835 - B158DRAFT_2064 0.17 -1.4
199,899 + B158DRAFT_2064 0.25 -1.3
199,965 + B158DRAFT_2064 0.32 -2.2
199,973 - B158DRAFT_2064 0.33 -2.0
200,075 + B158DRAFT_2064 0.46 -2.5
200,083 - B158DRAFT_2064 0.47 -1.4
200,092 + B158DRAFT_2064 0.48 -2.6
200,092 + B158DRAFT_2064 0.48 -2.6
200,100 - B158DRAFT_2064 0.49 -2.2
200,103 + B158DRAFT_2064 0.49 -1.9
200,110 + B158DRAFT_2064 0.50 -1.5
200,110 + B158DRAFT_2064 0.50 -1.8
200,110 + B158DRAFT_2064 0.50 -1.4
200,118 - B158DRAFT_2064 0.51 -2.3
200,118 - B158DRAFT_2064 0.51 -1.8
200,118 - B158DRAFT_2064 0.51 -1.3
200,118 - B158DRAFT_2064 0.51 -2.8
200,118 - B158DRAFT_2064 0.51 -1.5
200,122 + B158DRAFT_2064 0.51 -2.2
200,130 - B158DRAFT_2064 0.52 -1.9
200,155 + B158DRAFT_2064 0.55 -2.7
200,155 + B158DRAFT_2064 0.55 -2.2
200,195 + B158DRAFT_2064 0.60 -1.5
200,195 + B158DRAFT_2064 0.60 -1.2
200,217 + B158DRAFT_2064 0.63 -2.8
200,244 - B158DRAFT_2064 0.66 -1.0
200,256 - B158DRAFT_2064 0.67 -1.9
200,299 - B158DRAFT_2064 0.73 -2.5
200,329 + B158DRAFT_2064 0.76 -2.1
200,337 - B158DRAFT_2064 0.77 -1.1
200,415 + B158DRAFT_2064 0.86 -2.3
200,415 + B158DRAFT_2064 0.86 -1.6
200,415 + B158DRAFT_2064 0.86 -2.7
200,420 + B158DRAFT_2064 0.87 -1.5
200,423 - B158DRAFT_2064 0.87 -2.2
200,423 - B158DRAFT_2064 0.87 -2.1
200,423 - B158DRAFT_2064 0.87 -1.7
200,423 - B158DRAFT_2064 0.87 -2.6
200,423 - B158DRAFT_2064 0.87 -2.8
200,425 + B158DRAFT_2064 0.88 -2.2
200,460 + -1.8
200,460 + -3.6
200,478 - -2.9
200,478 - -2.0
200,485 + -1.1
200,495 + -2.7
200,495 + -1.6
200,495 + -1.7
200,495 + -1.3
200,503 - -2.2
200,503 - -1.5
200,503 - -2.2
200,540 - -0.7

Or see this region's nucleotide sequence