Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1805

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1803 and B158DRAFT_1804 are separated by 41 nucleotidesB158DRAFT_1804 and B158DRAFT_1805 are separated by 283 nucleotidesB158DRAFT_1805 and B158DRAFT_1806 are separated by 70 nucleotides B158DRAFT_1803: B158DRAFT_1803 - Plasmid pRiA4b ORF-3-like protein., at 1,902,212 to 1,902,787 _1803 B158DRAFT_1804: B158DRAFT_1804 - EF hand., at 1,902,829 to 1,903,068 _1804 B158DRAFT_1805: B158DRAFT_1805 - NAD-dependent aldehyde dehydrogenases, at 1,903,352 to 1,904,872 _1805 B158DRAFT_1806: B158DRAFT_1806 - Glutamate dehydrogenase/leucine dehydrogenase, at 1,904,943 to 1,905,980 _1806 Position (kb) 1903 1904 1905Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1902.391 kb on + strand, within B158DRAFT_1803at 1902.402 kb on + strand, within B158DRAFT_1803at 1902.475 kb on - strand, within B158DRAFT_1803at 1902.489 kb on + strand, within B158DRAFT_1803at 1902.556 kb on + strand, within B158DRAFT_1803at 1902.556 kb on + strand, within B158DRAFT_1803at 1902.564 kb on - strand, within B158DRAFT_1803at 1902.568 kb on + strand, within B158DRAFT_1803at 1902.606 kb on + strand, within B158DRAFT_1803at 1902.653 kb on + strand, within B158DRAFT_1803at 1902.661 kb on - strand, within B158DRAFT_1803at 1902.661 kb on - strand, within B158DRAFT_1803at 1902.661 kb on - strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.663 kb on + strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.671 kb on - strand, within B158DRAFT_1803at 1902.712 kb on + strand, within B158DRAFT_1803at 1902.712 kb on - strand, within B158DRAFT_1803at 1902.720 kb on - strand, within B158DRAFT_1803at 1902.753 kb on + strandat 1902.755 kb on + strandat 1902.763 kb on - strandat 1902.768 kb on - strandat 1902.787 kb on - strandat 1902.969 kb on + strand, within B158DRAFT_1804at 1902.969 kb on + strand, within B158DRAFT_1804at 1902.969 kb on + strand, within B158DRAFT_1804at 1902.969 kb on + strand, within B158DRAFT_1804at 1902.977 kb on - strand, within B158DRAFT_1804at 1902.977 kb on - strand, within B158DRAFT_1804at 1902.977 kb on - strand, within B158DRAFT_1804at 1902.977 kb on - strand, within B158DRAFT_1804at 1902.977 kb on - strand, within B158DRAFT_1804at 1903.030 kb on + strand, within B158DRAFT_1804at 1903.165 kb on + strandat 1903.165 kb on + strandat 1903.189 kb on + strandat 1903.189 kb on + strandat 1903.189 kb on + strandat 1903.189 kb on + strandat 1903.189 kb on + strandat 1903.189 kb on + strandat 1903.189 kb on + strandat 1903.189 kb on + strandat 1903.197 kb on - strandat 1903.197 kb on - strandat 1903.197 kb on - strandat 1903.197 kb on - strandat 1903.197 kb on - strandat 1903.197 kb on - strandat 1903.205 kb on + strandat 1903.406 kb on + strandat 1903.411 kb on + strandat 1903.411 kb on + strandat 1903.411 kb on + strandat 1903.568 kb on + strand, within B158DRAFT_1805at 1903.721 kb on + strand, within B158DRAFT_1805at 1903.764 kb on + strand, within B158DRAFT_1805at 1904.174 kb on + strand, within B158DRAFT_1805at 1904.211 kb on + strand, within B158DRAFT_1805at 1904.223 kb on + strand, within B158DRAFT_1805at 1904.404 kb on + strand, within B158DRAFT_1805at 1904.503 kb on + strand, within B158DRAFT_1805at 1904.521 kb on + strand, within B158DRAFT_1805at 1904.596 kb on + strand, within B158DRAFT_1805at 1904.611 kb on + strand, within B158DRAFT_1805at 1904.789 kb on + strandat 1904.789 kb on + strandat 1904.818 kb on + strandat 1904.818 kb on + strandat 1904.818 kb on + strandat 1904.818 kb on + strandat 1904.818 kb on + strandat 1904.866 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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1,902,391 + B158DRAFT_1803 0.31 -1.0
1,902,402 + B158DRAFT_1803 0.33 +0.2
1,902,475 - B158DRAFT_1803 0.46 +0.0
1,902,489 + B158DRAFT_1803 0.48 +0.2
1,902,556 + B158DRAFT_1803 0.60 +0.1
1,902,556 + B158DRAFT_1803 0.60 +0.5
1,902,564 - B158DRAFT_1803 0.61 +0.4
1,902,568 + B158DRAFT_1803 0.62 -0.6
1,902,606 + B158DRAFT_1803 0.68 -0.3
1,902,653 + B158DRAFT_1803 0.77 +0.3
1,902,661 - B158DRAFT_1803 0.78 +0.6
1,902,661 - B158DRAFT_1803 0.78 +0.5
1,902,661 - B158DRAFT_1803 0.78 -1.3
1,902,663 + B158DRAFT_1803 0.78 +0.5
1,902,663 + B158DRAFT_1803 0.78 +0.5
1,902,663 + B158DRAFT_1803 0.78 +0.6
1,902,663 + B158DRAFT_1803 0.78 +0.9
1,902,663 + B158DRAFT_1803 0.78 +0.0
1,902,663 + B158DRAFT_1803 0.78 -0.1
1,902,663 + B158DRAFT_1803 0.78 -0.1
1,902,663 + B158DRAFT_1803 0.78 +0.2
1,902,663 + B158DRAFT_1803 0.78 +0.6
1,902,663 + B158DRAFT_1803 0.78 +0.1
1,902,663 + B158DRAFT_1803 0.78 +0.3
1,902,663 + B158DRAFT_1803 0.78 +0.0
1,902,663 + B158DRAFT_1803 0.78 +0.2
1,902,663 + B158DRAFT_1803 0.78 -0.1
1,902,663 + B158DRAFT_1803 0.78 +0.1
1,902,663 + B158DRAFT_1803 0.78 +0.0
1,902,663 + B158DRAFT_1803 0.78 +0.2
1,902,663 + B158DRAFT_1803 0.78 +0.3
1,902,663 + B158DRAFT_1803 0.78 -0.2
1,902,663 + B158DRAFT_1803 0.78 +0.6
1,902,663 + B158DRAFT_1803 0.78 -0.1
1,902,663 + B158DRAFT_1803 0.78 +0.1
1,902,671 - B158DRAFT_1803 0.80 +0.1
1,902,671 - B158DRAFT_1803 0.80 +0.7
1,902,671 - B158DRAFT_1803 0.80 +0.2
1,902,671 - B158DRAFT_1803 0.80 -0.7
1,902,671 - B158DRAFT_1803 0.80 -0.7
1,902,671 - B158DRAFT_1803 0.80 -0.6
1,902,671 - B158DRAFT_1803 0.80 -0.1
1,902,671 - B158DRAFT_1803 0.80 +0.1
1,902,671 - B158DRAFT_1803 0.80 -0.5
1,902,671 - B158DRAFT_1803 0.80 +0.9
1,902,671 - B158DRAFT_1803 0.80 +0.3
1,902,671 - B158DRAFT_1803 0.80 -0.1
1,902,671 - B158DRAFT_1803 0.80 +0.2
1,902,671 - B158DRAFT_1803 0.80 -0.2
1,902,671 - B158DRAFT_1803 0.80 +0.0
1,902,671 - B158DRAFT_1803 0.80 -0.0
1,902,671 - B158DRAFT_1803 0.80 +0.4
1,902,671 - B158DRAFT_1803 0.80 -0.5
1,902,671 - B158DRAFT_1803 0.80 -0.2
1,902,671 - B158DRAFT_1803 0.80 +1.1
1,902,671 - B158DRAFT_1803 0.80 +0.5
1,902,712 + B158DRAFT_1803 0.87 -0.7
1,902,712 - B158DRAFT_1803 0.87 -0.5
1,902,720 - B158DRAFT_1803 0.88 +0.2
1,902,753 + +0.1
1,902,755 + -0.8
1,902,763 - +0.2
1,902,768 - +0.0
1,902,787 - -0.0
1,902,969 + B158DRAFT_1804 0.58 -0.9
1,902,969 + B158DRAFT_1804 0.58 -0.5
1,902,969 + B158DRAFT_1804 0.58 +0.3
1,902,969 + B158DRAFT_1804 0.58 +0.2
1,902,977 - B158DRAFT_1804 0.62 -0.6
1,902,977 - B158DRAFT_1804 0.62 +0.2
1,902,977 - B158DRAFT_1804 0.62 -0.8
1,902,977 - B158DRAFT_1804 0.62 -0.3
1,902,977 - B158DRAFT_1804 0.62 -0.0
1,903,030 + B158DRAFT_1804 0.84 -0.3
1,903,165 + +0.1
1,903,165 + +0.3
1,903,189 + +0.6
1,903,189 + +0.2
1,903,189 + -0.0
1,903,189 + +0.0
1,903,189 + +1.0
1,903,189 + +0.4
1,903,189 + +0.6
1,903,189 + +0.7
1,903,197 - +0.8
1,903,197 - +0.6
1,903,197 - +1.1
1,903,197 - +0.4
1,903,197 - +0.8
1,903,197 - +0.3
1,903,205 + +0.3
1,903,406 + -2.5
1,903,411 + -5.5
1,903,411 + -3.3
1,903,411 + -2.8
1,903,568 + B158DRAFT_1805 0.14 -2.4
1,903,721 + B158DRAFT_1805 0.24 -3.7
1,903,764 + B158DRAFT_1805 0.27 -3.1
1,904,174 + B158DRAFT_1805 0.54 -3.5
1,904,211 + B158DRAFT_1805 0.56 -3.5
1,904,223 + B158DRAFT_1805 0.57 -2.5
1,904,404 + B158DRAFT_1805 0.69 -3.8
1,904,503 + B158DRAFT_1805 0.76 -2.5
1,904,521 + B158DRAFT_1805 0.77 -4.4
1,904,596 + B158DRAFT_1805 0.82 -6.5
1,904,611 + B158DRAFT_1805 0.83 -4.7
1,904,789 + -3.7
1,904,789 + -1.7
1,904,818 + -5.4
1,904,818 + -3.0
1,904,818 + -3.5
1,904,818 + -1.0
1,904,818 + -4.1
1,904,866 + +0.4

Or see this region's nucleotide sequence